Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0003782

Physical Location & Seq

Genomic Coordinates Reverse (-)

21048121 .. 21048834

Gene Structure 714 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g21590.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGAAAATGTCGTCATCAGCAACAGCAGCAGCAGTGGGGGTCTCTGATCCAAGCCAACTTCACTTGAAGAGGGAGCTCACTCAGATTCGAAAAGCCGCCCGCGTTCTTCGTGATCCTGGCACCACTTCCTCCTGGCGCTCTCCGCTCGCCTCCTCCTCCTCTAGATCTGCGGCCGTGGCGGCAGCTGCCCAAGCAGCTATCACTACTGCTAAAACAACTACTACTTCCACTTGGAACAACAACAACAACATTGGGAATAATAGAAATGGCAGCGACAGGAGGGTCTTCTTGCACAACTGGAAGAACTCCAAATCCTCCTCCAGAAACGATGACTACAACGACGATGAAGATGACGATGAAGATTACAATGATGATGATGGCATTTACGTTATTGAAGATGGCATTGATGCTTCTTCTTCAGTTGCAGACTTGAGTGTTGATGATAGCTTGAGTGATGCGCGTACTGGAAGAGGAGGAGGAGGAGATGGAGGAGATTCGAGGAGTGACACTCAGACTCACAGCCGCTCCTCATCCACCATGCTCCGGCGTAGATATGCACACCTTTTGCCTCCTCGCAAAAACACTAACAAAACAAGTAAGAAAACCGATGCCCACTCCGACCTTTTATCCAAATATCAGAAGAAAGAGTTATTTCTTGGTAGGAACAGAAAACTAGTAGTGGACGGTCACCCAAGATCGATCCGCCCGCCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005663 GO:0005694 GO:0005886 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009653 GO:0009888 GO:0009987 GO:0010026 GO:0010090 GO:0010091 GO:0016020 GO:0016043 GO:0030154 GO:0032502 GO:0032989 GO:0032991 GO:0033554 GO:0034641 GO:0034645 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0046483 GO:0048468 GO:0048856 GO:0048869 GO:0050896 GO:0051716 GO:0071704 GO:0071840 GO:0071944 GO:0090304 GO:0090558 GO:0090626 GO:1901360 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DNA_pol3_delta2 DNA_pol3_gamma3

Protein Analysis

238

Amino Acids

25.82

Weight (kDa)

9.42

Isoelectric Point (pI)

56.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003782)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14460 AT2G02480 AT2G02480
fragaria_vesca	FvH4_5g27450 FvH4_5g27450
malus_domestica	MD08G1249500.v1.1
prunus_persica	Prupe.1G586700_v2.0.a1 Prupe.1G586700_v2.0.a1 Prupe.1G586700_v2.0.a1 Prupe.1G586700_v2.0.a1 Prupe.1G586700_v2.0.a1
pyrus_communis	pycom08g21590
rosa_chinensis	RchiOBHm_Chr2g0146641 RchiOBHm_Chr7g0218871
rosa_laevigata	RLG00000001635 RLG00000002346 RLG00000002355
rosa_multiflora	Rmu_sc0003823.1_g000001 Rmu_sc0006998.1_g000001
rosa_roxburghii	Rroxscaffold_3G00240440
rosa_rugosa	Rorug07G0179300
rosa_samantha	Rh3AG021300 Rh3CG020600 Rh5BG537900 Rh5CG561800 Rh7AG322600 Rh7BG313700 Rh7CG339400 Rh7DG319800 Rh7DG389400
rosa_wichuraiana	Rw5G027500 Rw7G026930 Rw7G027310 Rw7G028430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	281
AccB1I	GGYRCC	1 cut(s)	119
AccBSI	CCGCTC	2 cut(s)	145, 525
AccII	CGCG	2 cut(s)	102, 460
AciI	CCGC	8 cut(s)	96, 100, 143, 170, 179, 523, 703, 707
AclWI	GGATC	3 cut(s)	41, 107, 694
AcoI	YGGCCR	1 cut(s)	171
AcuI	CTGAAG	1 cut(s)	402
AfaI	GTAC	1 cut(s)	463
AfiI	CCNNNNNNNGG	1 cut(s)	543
AgsI	TTSAA	2 cut(s)	67, 395
AhlI	ACTAGT	1 cut(s)	673
AjnI	CCWGG	2 cut(s)	115, 131
AloI	GAACNNNNNNTCC	2 cut(s)	296, 328
AluBI	AGCT	4 cut(s)	76, 185, 197, 447
AluI	AGCT	4 cut(s)	76, 185, 197, 447
Alw21I	GWGCWC	1 cut(s)	78
Alw26I	GTCTC	1 cut(s)	46
AlwI	GGATC	3 cut(s)	41, 107, 694
AoxI	GGCC	1 cut(s)	171
ApeKI	GCWGC	6 cut(s)	26, 29, 182, 185, 194, 270
AspLEI	GCGC	2 cut(s)	138, 460
AsuHPI	GGTGA	1 cut(s)	680
AsuII	TTCGAA	1 cut(s)	88
BanI	GGYRCC	1 cut(s)	119
BanII	GRGCYC	1 cut(s)	78
BbsI	GAAGAC	1 cut(s)	277
Bbv12I	GWGCWC	1 cut(s)	78
BbvI	GCAGC	6 cut(s)	38, 41, 172, 194, 206, 282
BccI	CCATC	3 cut(s)	371, 392, 479
BceAI	ACGGC	2 cut(s)	158, 694
BciT130I	CCWGG	2 cut(s)	117, 133
BcoDI	GTCTC	1 cut(s)	46
BcuI	ACTAGT	1 cut(s)	673
BfaI	CTAG	2 cut(s)	162, 674
BfoI	RGCGCY	1 cut(s)	139
BglI	GCCNNNNNGGC	1 cut(s)	179
BglII	AGATCT	1 cut(s)	164
Bme1390I	CCNGG	2 cut(s)	117, 133
BmiI	GGNNCC	1 cut(s)	121
BmrFI	CCNGG	2 cut(s)	117, 133
BmsI	GCATC	3 cut(s)	397, 445, 598
BpiI	GAAGAC	1 cut(s)	277
BplI	GAGNNNNNCTC	2 cut(s)	493, 525
BpmI	CTGGAG	1 cut(s)	304
Bpu14I	TTCGAA	1 cut(s)	88
BpuEI	CTTGAG	2 cut(s)	451, 469
Bsa29I	ATCGAT	1 cut(s)	698
BsaI	GGTCTC	1 cut(s)	46
BsaJI	CCNNGG	1 cut(s)	174
BsaXI	ACNNNNNCTCC	2 cut(s)	509, 539
Bsc4I	CCNNNNNNNGG	1 cut(s)	543
Bse1I	ACTGG	2 cut(s)	302, 469
BseBI	CCWGG	2 cut(s)	117, 133
BseCI	ATCGAT	1 cut(s)	698
BseDI	CCNNGG	1 cut(s)	174
BseGI	GGATG	1 cut(s)	530
BseLI	CCNNNNNNNGG	1 cut(s)	543
BseMII	CTCAG	2 cut(s)	95, 524
BseNI	ACTGG	2 cut(s)	302, 469
BseX3I	CGGCCG	1 cut(s)	171
BseXI	GCAGC	6 cut(s)	38, 41, 172, 194, 206, 282
Bsh1236I	CGCG	2 cut(s)	102, 460
Bsh1285I	CGRYCG	1 cut(s)	174
BshFI	GGCC	1 cut(s)	173
BshNI	GGYRCC	1 cut(s)	119
BshVI	ATCGAT	1 cut(s)	698
BsiEI	CGRYCG	1 cut(s)	174
BsiHKAI	GWGCWC	1 cut(s)	78
BsiSI	CCGG	1 cut(s)	544
BslI	CCNNNNNNNGG	1 cut(s)	543
BsmAI	GTCTC	1 cut(s)	46
BsnI	GGCC	1 cut(s)	173
Bso31I	GGTCTC	1 cut(s)	46
Bsp119I	TTCGAA	1 cut(s)	88
Bsp1286I	GDGCHC	1 cut(s)	78
Bsp143I	GATC	5 cut(s)	46, 112, 164, 695, 699
BspACI	CCGC	8 cut(s)	96, 100, 143, 170, 179, 523, 703, 707
BspANI	GGCC	1 cut(s)	173
BspCNI	CTCAG	2 cut(s)	94, 523
BspDI	ATCGAT	1 cut(s)	698
BspFNI	CGCG	2 cut(s)	102, 460
BspLI	GGNNCC	1 cut(s)	121
BspPI	GGATC	3 cut(s)	41, 107, 694
BspT104I	TTCGAA	1 cut(s)	88
BspT107I	GGYRCC	1 cut(s)	119
BspTNI	GGTCTC	1 cut(s)	46
BsrBI	CCGCTC	2 cut(s)	145, 525
BsrI	ACTGG	2 cut(s)	302, 469
BssECI	CCNNGG	1 cut(s)	174
BssMI	GATC	5 cut(s)	46, 112, 164, 695, 699
Bst2UI	CCWGG	2 cut(s)	117, 133
Bst4CI	ACNGT	1 cut(s)	686
Bst6I	CTCTTC	2 cut(s)	62, 463
BstBI	TTCGAA	1 cut(s)	88
BstC8I	GCNNGC	3 cut(s)	100, 147, 707
BstDEI	CTNAG	2 cut(s)	81, 510
BstDSI	CCRYGG	1 cut(s)	174
BstEII	GGTNACC	1 cut(s)	686
BstF5I	GGATG	1 cut(s)	530
BstFNI	CGCG	2 cut(s)	102, 460
BstH2I	RGCGCY	1 cut(s)	139
BstHHI	GCGC	2 cut(s)	138, 460
BstKTI	GATC	5 cut(s)	49, 115, 167, 698, 702
BstMAI	GTCTC	1 cut(s)	46
BstMBI	GATC	5 cut(s)	46, 112, 164, 695, 699
BstMCI	CGRYCG	1 cut(s)	174
BstMWI	GCNNNNNNNGC	7 cut(s)	26, 142, 176, 179, 185, 191, 194
BstNI	CCWGG	2 cut(s)	117, 133
BstPI	GGTNACC	1 cut(s)	686
BstSCI	CCNGG	2 cut(s)	115, 131
BstUI	CGCG	2 cut(s)	102, 460
BstV1I	GCAGC	6 cut(s)	38, 41, 172, 194, 206, 282
BstV2I	GAAGAC	1 cut(s)	277
BstX2I	RGATCY	1 cut(s)	164
BstYI	RGATCY	1 cut(s)	164
BstZI	CGGCCG	1 cut(s)	171
Bsu15I	ATCGAT	1 cut(s)	698
BsuRI	GGCC	1 cut(s)	173
BsuTUI	ATCGAT	1 cut(s)	698
BtgI	CCRYGG	1 cut(s)	174
BtsCI	GGATG	1 cut(s)	530
BtsI	GCAGTG	1 cut(s)	39
BtsIMutI	CAGTG	1 cut(s)	39
Cac8I	GCNNGC	3 cut(s)	100, 147, 707
CfoI	GCGC	2 cut(s)	138, 460
ClaI	ATCGAT	1 cut(s)	698
Csp6I	GTAC	1 cut(s)	462
CviAII	CATG	1 cut(s)	538
CviJI	RGCY	8 cut(s)	54, 76, 95, 173, 185, 197, 447, 522
CviKI_1	RGCY	8 cut(s)	54, 76, 95, 173, 185, 197, 447, 522
CviQI	GTAC	1 cut(s)	462
DdeI	CTNAG	2 cut(s)	81, 510
DpnI	GATC	5 cut(s)	48, 114, 166, 697, 701
DpnII	GATC	5 cut(s)	46, 112, 164, 695, 699
DrdI	GACNNNNNNGTC	1 cut(s)	281
DseDI	GACNNNNNNGTC	1 cut(s)	281
EaeI	YGGCCR	1 cut(s)	171
EagI	CGGCCG	1 cut(s)	171
Eam1104I	CTCTTC	2 cut(s)	62, 463
EarI	CTCTTC	2 cut(s)	62, 463
EciI	GGCGGA	1 cut(s)	692
Ecl136II	GAGCTC	1 cut(s)	76
EclXI	CGGCCG	1 cut(s)	171
Eco24I	GRGCYC	1 cut(s)	78
Eco31I	GGTCTC	1 cut(s)	46
Eco52I	CGGCCG	1 cut(s)	171
Eco53kI	GAGCTC	1 cut(s)	76
Eco57I	CTGAAG	1 cut(s)	402
Eco91I	GGTNACC	1 cut(s)	686
EcoICRI	GAGCTC	1 cut(s)	76
EcoO65I	GGTNACC	1 cut(s)	686
EcoRII	CCWGG	2 cut(s)	115, 131
EcoT38I	GRGCYC	1 cut(s)	78
FaeI	CATG	1 cut(s)	541
FaiI	YATR	2 cut(s)	539, 555
FatI	CATG	1 cut(s)	537
FauI	CCCGC	1 cut(s)	107
FokI	GGATG	1 cut(s)	517
FriOI	GRGCYC	1 cut(s)	78
FspBI	CTAG	2 cut(s)	162, 674
GlaI	GCGC	2 cut(s)	137, 459
GsuI	CTGGAG	1 cut(s)	304
HaeII	RGCGCY	1 cut(s)	139
HaeIII	GGCC	1 cut(s)	173
HapII	CCGG	1 cut(s)	544
HhaI	GCGC	2 cut(s)	138, 460
Hin1II	CATG	1 cut(s)	541
Hin6I	GCGC	2 cut(s)	136, 458
HinP1I	GCGC	2 cut(s)	136, 458
HinfI	GANTC	3 cut(s)	85, 494, 514
HpaII	CCGG	1 cut(s)	544
HphI	GGTGA	1 cut(s)	680
Hpy166II	GTNNAC	1 cut(s)	682
Hpy188I	TCNGA	5 cut(s)	46, 84, 513, 619, 639
Hpy188III	TCNNGA	3 cut(s)	110, 162, 321
Hpy8I	GTNNAC	1 cut(s)	682
Hpy99I	CGWCG	1 cut(s)	344
HpyCH4III	ACNGT	1 cut(s)	686
HpyCH4IV	ACGT	1 cut(s)	387
HpyCH4V	TGCA	3 cut(s)	292, 425, 557
HpyF10VI	GCNNNNNNNGC	7 cut(s)	26, 142, 176, 179, 185, 191, 194
HpyF3I	CTNAG	2 cut(s)	81, 510
HpySE526I	ACGT	1 cut(s)	387
Hsp92II	CATG	1 cut(s)	541
HspAI	GCGC	2 cut(s)	136, 458
Kzo9I	GATC	5 cut(s)	46, 112, 164, 695, 699
LmnI	GCTCC	3 cut(s)	73, 530, 546
LpnPI	CCDG	9 cut(s)	102, 118, 129, 145, 262, 283, 334, 450, 557
Lsp1109I	GCAGC	6 cut(s)	38, 41, 172, 194, 206, 282
LweI	GCATC	3 cut(s)	397, 445, 598
MaeI	CTAG	2 cut(s)	162, 674
MaeII	ACGT	1 cut(s)	387
MaeIII	GTNAC	2 cut(s)	503, 686
MalI	GATC	5 cut(s)	48, 114, 166, 697, 701
MbiI	CCGCTC	2 cut(s)	145, 525
MboI	GATC	5 cut(s)	46, 112, 164, 695, 699
MflI	RGATCY	1 cut(s)	164
MhlI	GDGCHC	1 cut(s)	78
MlyI	GAGTC	1 cut(s)	508
MmeI	TCCRAC	1 cut(s)	642
MspA1I	CMGCKG	1 cut(s)	185
MspI	CCGG	1 cut(s)	544
MspR9I	CCNGG	2 cut(s)	117, 133
MvaI	CCWGG	2 cut(s)	117, 133
MvnI	CGCG	2 cut(s)	102, 460
MwoI	GCNNNNNNNGC	7 cut(s)	26, 142, 176, 179, 185, 191, 194
NdeII	GATC	5 cut(s)	46, 112, 164, 695, 699
NlaIII	CATG	1 cut(s)	541
NlaIV	GGNNCC	1 cut(s)	121
NmuCI	GTSAC	2 cut(s)	503, 686
NspV	TTCGAA	1 cut(s)	88
PfeI	GAWTC	2 cut(s)	85, 494
PleI	GAGTC	1 cut(s)	508
PpsI	GAGTC	1 cut(s)	508
Psp124BI	GAGCTC	1 cut(s)	78
Psp6I	CCWGG	2 cut(s)	115, 131
PspEI	GGTNACC	1 cut(s)	686
PspGI	CCWGG	2 cut(s)	115, 131
PspN4I	GGNNCC	1 cut(s)	121
PsuI	RGATCY	1 cut(s)	164
PvuII	CAGCTG	1 cut(s)	185
RsaI	GTAC	1 cut(s)	463
RsaNI	GTAC	1 cut(s)	462
SacI	GAGCTC	1 cut(s)	78
Sau3AI	GATC	5 cut(s)	46, 112, 164, 695, 699
SchI	GAGTC	1 cut(s)	508
ScrFI	CCNGG	2 cut(s)	117, 133
SduI	GDGCHC	1 cut(s)	78
SetI	ASST	7 cut(s)	78, 187, 199, 390, 449, 564, 624
SfaNI	GCATC	3 cut(s)	397, 445, 598
SfuI	TTCGAA	1 cut(s)	88
SmlI	CTYRAG	2 cut(s)	430, 448
SmoI	CTYRAG	2 cut(s)	430, 448
SpeI	ACTAGT	1 cut(s)	673
SsiI	CCGC	8 cut(s)	96, 100, 143, 170, 179, 523, 703, 707
SspMI	CTAG	2 cut(s)	162, 674
SstI	GAGCTC	1 cut(s)	78
StyD4I	CCNGG	2 cut(s)	115, 131
TaaI	ACNGT	1 cut(s)	686
TaiI	ACGT	1 cut(s)	390
TaqI	TCGA	3 cut(s)	88, 497, 698
TauI	GCSGC	4 cut(s)	98, 173, 182, 525
TfiI	GAWTC	2 cut(s)	85, 494
TscAI	CASTG	1 cut(s)	39
TseFI	GTSAC	2 cut(s)	503, 686
TseI	GCWGC	6 cut(s)	26, 29, 182, 185, 194, 270
Tsp45I	GTSAC	2 cut(s)	503, 686
TspDTI	ATGAA	3 cut(s)	17, 360, 372
TspRI	CASTG	1 cut(s)	39
XbaI	TCTAGA	1 cut(s)	161
XspI	CTAG	2 cut(s)	162, 674

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.