Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0003782

Physical Location & Seq

Genomic Coordinates Forward (+)

38129951 .. 38137991

Gene Structure 8041 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG319800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3540 bp

ATGTCAGTAGCAGCAATGGGTGTGTCTGATCCAAGCCAACTCCACTTGAAGAAAGAGCTCACGCAGATTCGAAAGGCCGCCCGCGTTCTCCGCGATCCGGGGACCACTTCTTCTTGGCGCTCTCCTTTGGCTTCCTCTAGATCTGCTGCGGCCCCCGGAGCGGCGGCCGTTCCTTCTGCTTGTTCCGCTTCCCACAATACCAACAATGGCGGCGGCGACAACAAGAGGGTGTTCTTGTACAACTGGAAGGGCTCTTCCAAATCGTCGAGAAATGATGACTACGAAGAGGATGAGGAGGAGGATGATTATGGTGTTGAAGATGAGGACGCTGCTTCTTCTTCTGTTGCGGCATTCAGTGTGGATGACAGCTTGAGCCACGGAGATTCCAGGAGTGACACTGGTGGTGGTCAGAGCCGGTCGTTGATGATACTCCGGCGCAGATATCCCAATCTTCTACCGCCGCTCAAAGATGGTAATGGTAATGGTAATGGTAAGAAAGCAAGTAAGAAAATCGAGTCCCATTCTCATGTTTTGTCCAAACATCAGCAGAAAGAGTTGATTCTTGGTAGGAACTTAAGAAAGGGAGGCCGGGATGAGCAATCCGATGACACTGAGGATTACTCTAATTCTGAGGATCTGAGGCACATTAGAGGGGCTTCCCCATTGCTCTTGAAGCTTAGGCACAAGCATTGGCCTCCGGCCTCCACTAATGTTAGGAGAAATGATAGTAGAGCAGAGGACTCTTCTTATTGCTACAGCACTCCTGCATTGTCGACTAGTTCTTATAATAGGTATGGTGTTCGGAATCCAAGTACTGTTGGATCTTGGGATGGAACTGCGACTTCAATGAATGATGGGGATGATGAGGTTGAGGACCATTTGGATATTCCCGGTAGCAAAGGATGTGGGATTCCTTGTTATTGGTCCAAAAAGACCCCGAAGCACAGAGGCATGTATGGGAGCTGTTGCTCCCCTTCGCTTTCTGATACTATAAGGAGAAAAGGAAGTGTCCTTTTGTGTGGAAGTCAAAATGTTTATCCTAGACGACGGGGGTCGTCGTCAGGTTCTAATAAGCGGAGAATTGCATCTAGAAGTGCGCAAGGTGTTCTGCCATTGCTAAACAATAGTGGTGATGGTAGAGGAGGGTCATCCATAGGAACTGGGAGGAGTGATGACGAACTCTCCACAAACTTTGGGGAACTTGATTTGGAAGCTTTGAGTAGATTGGATGGACGGAGATGGTCAAGCTGCCGAAGTCAAGAAGGCTTGGAGATTGTAGCTCTGAGTGGAGTGGGGGAAGAGGAAAGCACTCCAGATAGTGTTAGAAGTTTTAGCCAGAAGTACAAGCCGATGTTCTTTCGTGAATTGATTGGCCAGAATATTGTGGTGCAATCACTTATAAATGCTATTGATAGGTGTAGGATTGCTCCCGTTTATCTTTTCCAGGGACCCCGTGGAACTGGAAAAACGTCAACAGCTAGAATTTTTGCTGCTTCCTTGAATTGCCTAGCTCCTGATGAAACTAAACCCTGTGGCTACTGCAGGGAGTGCACTGATTTTATGTCTGGTAAGAACAAGGATCTATTGGAAGTTAATGGTACCAATAAGAAAGGAATTGATAAAGTCAGGTACCTATTGAAAACTCTTTCTGTGGCTCCCTCATCAGCATCATCAAGGTATAAGGTTTTTGTGATTGATGAGTGTCACCTTTTGCCTTCTAAGACATGGTTGGCATTTCTTAAATATTTGGAAGAACCACCGCAGCGAGTTGTCTTCATATTCATTACAACTGATTTGGATAATGTTCCTCGTACCATACAATCTCGGTGTCAGAAATATCTCTTCAACAAAATTAAGGATAGTGAGATTGTGGCCAGGTTGAGGAAAATTGCTGTTGAAGAGAATCTAGATGTTGAACCAGATGCATTAGATTTGATTGCTTTGAATGCAGATGGTTCACTTCGAGATGCAGAAACTATGTTGGACCAGTTGAGTTTGCTGGGGAAAAGAATTACAACATCTCTTGTGAATGAACTTGTGGGAGTTGTTTCCGATGACAAGTTACTAGATCTTTTGGAGTTAGCAATGTCATCGGACACTGCAGAAACAGTGAAAAGGGCCAGAGATTTGATGGACTCTGGGGTTGATCCCATGGTTTTGATGTCTCAGTTGGCCAGCTTAATTATGGACATCATTGCGGGAACCAACGGTACTAATGATGTCAAACATGACTCCTTATATGGTGCTCGGAACTTGACCGAAGCAGAATTGGAGAGATTAAAACATGCTCTGAAGATTCTTTCGGAGGCTGAAAAGCAGCTTAGGGTTTCAAGTGAGCGCTCAACATGGTTTACAGCTACTCTGTTGCAGCTTGGTTCAGTGCCTTCTCCAGACCTTAGTCACTCATGCAGCAGGAGGCATAGCTGCAAGACAACTGAGGATGATTCTTCAAGTGCTTCAACTTCAAGAGAAGCAGCCACTTACAAACAGAAGTTAGATGGTCACTATATACTACAAAAGTCAACTCAACATGCTTCTGTACAAAGAGCACCAAATGACAATTCCAACCATCAGGGAGATTCGTTGTCAAGAAATAATGGTTTCGGTGTGAATACCAAGCCCTCACATGATCAGTTTGTGGATAATGGGGCCTCGACTCCCTTGTGTGGAAATGTTATGGCTGGAAATATGAGCCTTAGATGTGTAAACTCTGAAAAGTTAAATGATGTATGGGCACAGTGTATTGAGAAGTGTCATTCAAAGACATTGAGGCAGCTGCTACATTCTCATGGAAAGCTAGTGTCTATATCTGAAGCTGAAGGTGTTCTGGTTGCTTACGTTGCATTTGAAGATGGAAGTATCAAATCTAGAGCAGAGAGGTTTGTGAGCAGTATCACAAATTCAATGGAAATAGTTCTCAGACGCAATGTCGAGGTTAGAATTGTTCACTTGCCAGGTGGGGAGGCTTCTCTAAATGGTCCAAGTCCAGTTCACTTGCTCGAAGGTCTAAAGCAGGCAGGAACTATGGCAGAACTTGTCAGGGAAAGGAAAAGAGTTGGTTCAAATGCCACAGATGGTTATTCCAATTGTTCTCTGTTTCTGGATGGGACCCACAAGTCAACCTCTGATTCATCAGACTTAGTTGCAGATGGCAATGCTCAAACAAGTGATACAAAAGAGAGCGGACAGGAGATTCCAATGCAGAGAATAGAATCCATTATTCGCGACCAAAGGTTAGAGACTGCGTGGCTACAGGTTGCAGAGAAAGGCACCCCTGGTTCTTTGAGTCGTTTGAAACCTGAAAAGAATCAGGTCCTGCCTCAGGATGGCATTTATTACGAAGATCAGATGGAATCGATGAATTCAATGGGATTATCCTCTCAGCAATGGGATGATGGATTAAACCATGAAGTAAAAATCTTGAGTGCTAACAGTGGGAAGGTCATTCAGCAGGACCAAATAGGTAAAAGGGTTGATCATTATCCTATGTCCCCAAGTTTACTACATGAAAAGGGCAAGTCCGACAAAGATCACCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005663 GO:0005694 GO:0005886 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009653 GO:0009888 GO:0009987 GO:0010026 GO:0010090 GO:0010091 GO:0016020 GO:0016043 GO:0030154 GO:0032502 GO:0032989 GO:0032991 GO:0033554 GO:0034641 GO:0034645 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0046483 GO:0048468 GO:0048856 GO:0048869 GO:0050896 GO:0051716 GO:0071704 GO:0071840 GO:0071944 GO:0090304 GO:0090558 GO:0090626 GO:1901360 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DNA_pol3_delta2 DNA_pol3_gamma3

Protein Analysis

1179

Amino Acids

129.23

Weight (kDa)

6.69

Isoelectric Point (pI)

49.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DNA_pol3_delta2	PF13177	459 - 618	1.8e-34	DNA polymerase III, delta subunit
AAA	PF00004	480 - 615	5.7e-09	ATPase family associated with various cellular activities (AAA)
DNAX_ATPase_lid	PF22608	622 - 663	9.7e-10	DNA polymerase III clamp loader subunit, ATPase lid domain
DNA_pol3_gamma3	PF12169	672 - 793	1.5e-08	DNA polymerase III subunits gamma and tau domain III
DnaA_N-like_STI	PF23007	900 - 981	6e-31	STICHEL, DnaA_N-like alpha-beta domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0003782)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14460 AT2G02480 AT2G02480
fragaria_vesca	FvH4_5g27450 FvH4_5g27450
malus_domestica	MD08G1249500.v1.1
prunus_persica	Prupe.1G586700_v2.0.a1 Prupe.1G586700_v2.0.a1 Prupe.1G586700_v2.0.a1 Prupe.1G586700_v2.0.a1 Prupe.1G586700_v2.0.a1
pyrus_communis	pycom08g21590
rosa_chinensis	RchiOBHm_Chr2g0146641 RchiOBHm_Chr7g0218871
rosa_laevigata	RLG00000001635 RLG00000002346 RLG00000002355
rosa_multiflora	Rmu_sc0003823.1_g000001 Rmu_sc0006998.1_g000001
rosa_roxburghii	Rroxscaffold_3G00240440
rosa_rugosa	Rorug07G0179300
rosa_samantha	Rh3AG021300 Rh3CG020600 Rh5BG537900 Rh5CG561800 Rh7AG322600 Rh7BG313700 Rh7CG339400 Rh7DG319800 Rh7DG389400
rosa_wichuraiana	Rw5G027500 Rw7G026930 Rw7G027310 Rw7G028430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	786, 1400
AasI	GACNNNNNNGTC	1 cut(s)	3115
Acc16I	TGCGCA	1 cut(s)	1098
Acc65I	GGTACC	2 cut(s)	1598, 1629
AccB1I	GGYRCC	3 cut(s)	1598, 1629, 3269
AccBSI	CCGCTC	3 cut(s)	161, 463, 3183
AccI	GTMKAC	1 cut(s)	773
AccII	CGCG	3 cut(s)	84, 93, 3225
AclWI	GGATC	6 cut(s)	23, 89, 642, 829, 1587, 2141
AcoI	YGGCCR	4 cut(s)	165, 1372, 1872, 2172
AcsI	RAATTY	3 cut(s)	1482, 2899, 3361
AcuI	CTGAAG	3 cut(s)	2312, 2832, 2838
AfaI	GTAC	8 cut(s)	239, 814, 1343, 1600, 1631, 1813, 2212, 2541
AfeI	AGCGCT	1 cut(s)	2339
AfiI	CCNNNNNNNGG	6 cut(s)	97, 160, 1881, 2666, 3322, 3326
AflII	CTTAAG	1 cut(s)	574
AhdI	GACNNNNNGTC	1 cut(s)	2927
AhlI	ACTAGT	1 cut(s)	776
AjnI	CCWGG	5 cut(s)	386, 1443, 1874, 2953, 3274
AjuI	GAANNNNNNNTTGG	2 cut(s)	2545, 2577
Alw21I	GWGCWC	4 cut(s)	60, 1553, 2248, 2551
Alw26I	GTCTC	2 cut(s)	2169, 3233
Alw44I	GTGCAC	1 cut(s)	1549
AlwI	GGATC	6 cut(s)	23, 89, 642, 829, 1587, 2141
AlwNI	CAGNNNCTG	1 cut(s)	3316
Aor51HI	AGCGCT	1 cut(s)	2339
ApaLI	GTGCAC	1 cut(s)	1549
ApoI	RAATTY	3 cut(s)	1482, 2899, 3361
Asp700I	GAANNNNTTC	2 cut(s)	2823, 2913
Asp718I	GGTACC	2 cut(s)	1598, 1629
AspLEI	GCGC	4 cut(s)	120, 438, 1099, 2340
AsuC2I	CCSGG	4 cut(s)	99, 156, 590, 891
AsuHPI	GGTGA	3 cut(s)	1142, 1697, 3524
AsuII	TTCGAA	1 cut(s)	70
AvaII	GGWCC	9 cut(s)	102, 874, 924, 1448, 1984, 2978, 3108, 3313, 3454
AxyI	CCTNAGG	1 cut(s)	3321
BaeGI	GKGCMC	2 cut(s)	1553, 2737
BalI	TGGCCA	3 cut(s)	1374, 1874, 2174
BanI	GGYRCC	3 cut(s)	1598, 1629, 3269
BanII	GRGCYC	2 cut(s)	60, 254
BbsI	GAAGAC	1 cut(s)	1765
Bbv12I	GWGCWC	4 cut(s)	60, 1553, 2248, 2551
BceAI	ACGGC	1 cut(s)	152
BcgI	CGANNNNNNTGC	2 cut(s)	2073, 2107
BciT130I	CCWGG	5 cut(s)	388, 1445, 1876, 2955, 3276
BclI	TGATCA	2 cut(s)	2629, 3475
BcnI	CCSGG	4 cut(s)	99, 156, 590, 891
BcoDI	GTCTC	2 cut(s)	2169, 3233
BcuI	ACTAGT	1 cut(s)	776
BfmI	CTRYAG	4 cut(s)	754, 1540, 2100, 3251
BfoI	RGCGCY	2 cut(s)	121, 2341
BfrI	CTTAAG	1 cut(s)	574
BglII	AGATCT	2 cut(s)	140, 2068
BmcAI	AGTACT	1 cut(s)	814
Bme1390I	CCNGG	9 cut(s)	99, 156, 388, 590, 891, 1445, 1876, 2955, 3276
Bme18I	GGWCC	9 cut(s)	102, 874, 924, 1448, 1984, 2978, 3108, 3313, 3454
BmeRI	GACNNNNNGTC	1 cut(s)	2927
BmrFI	CCNGG	9 cut(s)	99, 156, 388, 590, 891, 1445, 1876, 2955, 3276
BmrI	ACTGGG	1 cut(s)	1170
BmsI	GCATC	4 cut(s)	1094, 1676, 1912, 1957
BmuI	ACTGGG	1 cut(s)	1170
BoxI	GACNNNNGTC	2 cut(s)	1051, 2397
BpiI	GAAGAC	1 cut(s)	1765
BplI	GAGNNNNNCTC	2 cut(s)	605, 637
BpmI	CTGGAG	2 cut(s)	1296, 2373
Bpu10I	CCTNAGC	2 cut(s)	677, 2321
Bpu14I	TTCGAA	1 cut(s)	70
BpuEI	CTTGAG	2 cut(s)	391, 3442
BpuMI	CCSGG	4 cut(s)	99, 156, 590, 891
Bsa29I	ATCGAT	1 cut(s)	3356
BsaBI	GATNNNNATC	1 cut(s)	3480
BsaJI	CCNNGG	7 cut(s)	98, 154, 376, 1444, 1453, 2151, 3274
BsaXI	ACNNNNNCTCC	2 cut(s)	1166, 1196
Bsc4I	CCNNNNNNNGG	6 cut(s)	97, 160, 1881, 2666, 3322, 3326
Bse118I	RCCGGY	1 cut(s)	414
Bse1I	ACTGG	6 cut(s)	248, 403, 1165, 1465, 1987, 2987
Bse21I	CCTNAGG	1 cut(s)	3321
Bse3DI	GCAATG	8 cut(s)	21, 662, 1112, 2091, 2193, 2932, 3160, 3392
Bse8I	GATNNNNATC	1 cut(s)	3480
BseBI	CCWGG	5 cut(s)	388, 1445, 1876, 2955, 3276
BseCI	ATCGAT	1 cut(s)	3356
BseDI	CCNNGG	7 cut(s)	98, 154, 376, 1444, 1453, 2151, 3274
BseJI	GATNNNNATC	1 cut(s)	3480
BseLI	CCNNNNNNNGG	6 cut(s)	97, 160, 1881, 2666, 3322, 3326
BseMI	GCAATG	8 cut(s)	21, 662, 1112, 2091, 2193, 2932, 3160, 3392
BseMII	CTCAG	9 cut(s)	603, 621, 629, 1274, 2180, 2427, 2932, 3335, 3395
BseNI	ACTGG	6 cut(s)	248, 403, 1165, 1465, 1987, 2987
BseRI	GAGGAG	4 cut(s)	308, 311, 1155, 1180
BseSI	GKGCMC	2 cut(s)	1553, 2737
BseX3I	CGGCCG	1 cut(s)	165
BseYI	CCCAGC	1 cut(s)	1999
Bsh1236I	CGCG	3 cut(s)	84, 93, 3225
Bsh1285I	CGRYCG	2 cut(s)	168, 419
BshNI	GGYRCC	3 cut(s)	1598, 1629, 3269
BshVI	ATCGAT	1 cut(s)	3356
BsiEI	CGRYCG	2 cut(s)	168, 419
BsiHKAI	GWGCWC	4 cut(s)	60, 1553, 2248, 2551
BsiSI	CCGG	7 cut(s)	98, 156, 415, 433, 589, 698, 891
BslFI	GGGAC	5 cut(s)	115, 502, 1461, 3121, 3475
BslI	CCNNNNNNNGG	6 cut(s)	97, 160, 1881, 2666, 3322, 3326
BsmAI	GTCTC	2 cut(s)	2169, 3233
BsmFI	GGGAC	5 cut(s)	115, 502, 1461, 3121, 3475
BsmI	GAATGC	2 cut(s)	350, 1951
Bsp119I	TTCGAA	1 cut(s)	70
Bsp1286I	GDGCHC	6 cut(s)	60, 254, 1553, 2248, 2551, 2737
Bsp1407I	TGTACA	2 cut(s)	237, 2539
Bsp19I	CCATGG	1 cut(s)	2151
Bsp68I	TCGCGA	1 cut(s)	3225
BspCNI	CTCAG	9 cut(s)	604, 622, 630, 1275, 2179, 2428, 2931, 3334, 3394
BspDI	ATCGAT	1 cut(s)	3356
BspFNI	CGCG	3 cut(s)	84, 93, 3225
BspMAI	CTGCAG	2 cut(s)	1544, 2104
BspPI	GGATC	6 cut(s)	23, 89, 642, 829, 1587, 2141
BspQI	GCTCTTC	1 cut(s)	259
BspT104I	TTCGAA	1 cut(s)	70
BspT107I	GGYRCC	3 cut(s)	1598, 1629, 3269
BspTI	CTTAAG	1 cut(s)	574
BsrBI	CCGCTC	3 cut(s)	161, 463, 3183
BsrDI	GCAATG	8 cut(s)	21, 662, 1112, 2091, 2193, 2932, 3160, 3392
BsrFI	RCCGGY	1 cut(s)	414
BsrGI	TGTACA	2 cut(s)	237, 2539
BsrI	ACTGG	6 cut(s)	248, 403, 1165, 1465, 1987, 2987
BssAI	RCCGGY	1 cut(s)	414
BssECI	CCNNGG	7 cut(s)	98, 154, 376, 1444, 1453, 2151, 3274
BssT1I	CCWWGG	1 cut(s)	2151
Bst2UI	CCWGG	5 cut(s)	388, 1445, 1876, 2955, 3276
Bst4CI	ACNGT	5 cut(s)	817, 2110, 2210, 2739, 3434
Bst6I	CTCTTC	6 cut(s)	259, 279, 748, 1293, 1847, 1893
BstAFI	CTTAAG	1 cut(s)	574
BstAPI	GCANNNNNTGC	1 cut(s)	1548
BstAUI	TGTACA	2 cut(s)	237, 2539
BstBI	TTCGAA	1 cut(s)	70
BstC8I	GCNNGC	3 cut(s)	82, 2176, 3015
BstDSI	CCRYGG	3 cut(s)	376, 1453, 2151
BstENI	CCTNNNNNAGG	1 cut(s)	3320
BstFNI	CGCG	3 cut(s)	84, 93, 3225
BstH2I	RGCGCY	2 cut(s)	121, 2341
BstHHI	GCGC	4 cut(s)	120, 438, 1099, 2340
BstMAI	GTCTC	2 cut(s)	2169, 3233
BstMCI	CGRYCG	2 cut(s)	168, 419
BstMWI	GCNNNNNNNGC	7 cut(s)	90, 158, 185, 673, 1548, 1946, 2840
BstNI	CCWGG	5 cut(s)	388, 1445, 1876, 2955, 3276
BstNSI	RCATGY	3 cut(s)	955, 2288, 2534
BstPAI	GACNNNNGTC	2 cut(s)	1051, 2397
BstSCI	CCNGG	9 cut(s)	97, 154, 386, 588, 889, 1443, 1874, 2953, 3274
BstSFI	CTRYAG	4 cut(s)	754, 1540, 2100, 3251
BstSLI	GKGCMC	2 cut(s)	1553, 2737
BstUI	CGCG	3 cut(s)	84, 93, 3225
BstV2I	GAAGAC	1 cut(s)	1765
BstX2I	RGATCY	5 cut(s)	140, 634, 821, 1579, 2068
BstYI	RGATCY	5 cut(s)	140, 634, 821, 1579, 2068
BstZI	CGGCCG	1 cut(s)	165
Bsu15I	ATCGAT	1 cut(s)	3356
Bsu36I	CCTNAGG	1 cut(s)	3321
BsuTUI	ATCGAT	1 cut(s)	3356
BtgI	CCRYGG	3 cut(s)	376, 1453, 2151
BtsI	GCAGTG	1 cut(s)	2097
BtsIMutI	CAGTG	9 cut(s)	361, 396, 609, 1551, 2097, 2115, 2385, 2744, 3439
BtuMI	TCGCGA	1 cut(s)	3225
Cac8I	GCNNGC	3 cut(s)	82, 2176, 3015
CaiI	CAGNNNCTG	1 cut(s)	3316
CfoI	GCGC	4 cut(s)	120, 438, 1099, 2340
Cfr10I	RCCGGY	1 cut(s)	414
ClaI	ATCGAT	1 cut(s)	3356
CseI	GACGC	2 cut(s)	335, 2931
Csp6I	GTAC	8 cut(s)	238, 813, 1342, 1599, 1630, 1812, 2211, 2540
CspCI	CAANNNNNGTGG	4 cut(s)	886, 921, 1174, 1209
CviQI	GTAC	8 cut(s)	238, 813, 1342, 1599, 1630, 1812, 2211, 2540
DrdI	GACNNNNNNGTC	1 cut(s)	3115
DriI	GACNNNNNGTC	1 cut(s)	2927
DseDI	GACNNNNNNGTC	1 cut(s)	3115
EaeI	YGGCCR	4 cut(s)	165, 1372, 1872, 2172
EagI	CGGCCG	1 cut(s)	165
Eam1104I	CTCTTC	6 cut(s)	259, 279, 748, 1293, 1847, 1893
Eam1105I	GACNNNNNGTC	1 cut(s)	2927
EarI	CTCTTC	6 cut(s)	259, 279, 748, 1293, 1847, 1893
Ecl136II	GAGCTC	1 cut(s)	58
EclXI	CGGCCG	1 cut(s)	165
Eco130I	CCWWGG	1 cut(s)	2151
Eco24I	GRGCYC	2 cut(s)	60, 254
Eco32I	GATATC	1 cut(s)	443
Eco47I	GGWCC	9 cut(s)	102, 874, 924, 1448, 1984, 2978, 3108, 3313, 3454
Eco47III	AGCGCT	1 cut(s)	2339
Eco52I	CGGCCG	1 cut(s)	165
Eco53kI	GAGCTC	1 cut(s)	58
Eco57I	CTGAAG	3 cut(s)	2312, 2832, 2838
Eco81I	CCTNAGG	1 cut(s)	3321
EcoICRI	GAGCTC	1 cut(s)	58
EcoNI	CCTNNNNNAGG	1 cut(s)	3320
EcoO109I	RGGNCCY	4 cut(s)	1448, 2649, 3108, 3313
EcoRI	GAATTC	1 cut(s)	3361
EcoRII	CCWGG	5 cut(s)	386, 1443, 1874, 2953, 3274
EcoRV	GATATC	1 cut(s)	443
EcoT14I	CCWWGG	1 cut(s)	2151
EcoT22I	ATGCAT	1 cut(s)	1927
EcoT38I	GRGCYC	2 cut(s)	60, 254
ErhI	CCWWGG	1 cut(s)	2151
FaqI	GGGAC	5 cut(s)	115, 502, 1461, 3121, 3475
FauI	CCCGC	2 cut(s)	89, 2191
FbaI	TGATCA	2 cut(s)	2629, 3475
FblI	GTMKAC	1 cut(s)	773
FriOI	GRGCYC	2 cut(s)	60, 254
FspI	TGCGCA	1 cut(s)	1098
GlaI	GCGC	4 cut(s)	119, 437, 1098, 2339
GsaI	CCCAGC	1 cut(s)	2003
GsuI	CTGGAG	2 cut(s)	1296, 2373
HaeII	RGCGCY	2 cut(s)	121, 2341
HapII	CCGG	7 cut(s)	98, 156, 415, 433, 589, 698, 891
HgaI	GACGC	2 cut(s)	335, 2931
HhaI	GCGC	4 cut(s)	120, 438, 1099, 2340
Hin6I	GCGC	4 cut(s)	118, 436, 1097, 2338
HinP1I	GCGC	4 cut(s)	118, 436, 1097, 2338
HincII	GTYRAC	4 cut(s)	774, 1473, 2523, 3120
HindII	GTYRAC	4 cut(s)	774, 1473, 2523, 3120
HindIII	AAGCTT	2 cut(s)	674, 1212
HpaII	CCGG	7 cut(s)	98, 156, 415, 433, 589, 698, 891
HphI	GGTGA	3 cut(s)	1142, 1697, 3524
Hpy99I	CGWCG	3 cut(s)	268, 1050, 1060
HpyAV	CCTTC	9 cut(s)	183, 241, 984, 1256, 1725, 2394, 2813, 2996, 3433
HpyCH4III	ACNGT	5 cut(s)	817, 2110, 2210, 2739, 3434
HpyCH4IV	ACGT	2 cut(s)	1469, 2838
HpyF10VI	GCNNNNNNNGC	7 cut(s)	90, 158, 185, 673, 1548, 1946, 2840
HpySE526I	ACGT	2 cut(s)	1469, 2838
HspAI	GCGC	4 cut(s)	118, 436, 1097, 2338
KflI	GGGWCCC	2 cut(s)	1448, 3108
KpnI	GGTACC	2 cut(s)	1602, 1633
Ksp22I	TGATCA	2 cut(s)	2629, 3475
LguI	GCTCTTC	1 cut(s)	259
LmnI	GCTCC	6 cut(s)	158, 960, 974, 1432, 1516, 1660
LweI	GCATC	4 cut(s)	1094, 1676, 1912, 1957
MaeII	ACGT	2 cut(s)	1469, 2838
MaeIII	GTNAC	5 cut(s)	392, 1703, 2061, 2399, 2501
MbiI	CCGCTC	3 cut(s)	161, 463, 3183
MfeI	CAATTG	1 cut(s)	3085
MflI	RGATCY	5 cut(s)	140, 634, 821, 1579, 2068
MhlI	GDGCHC	6 cut(s)	60, 254, 1553, 2248, 2551, 2737
MlsI	TGGCCA	3 cut(s)	1374, 1874, 2174
MluNI	TGGCCA	3 cut(s)	1374, 1874, 2174
MlyI	GAGTC	6 cut(s)	524, 734, 2129, 2225, 2650, 3295
MmeI	TCCRAC	3 cut(s)	799, 1962, 2589
Mox20I	TGGCCA	3 cut(s)	1374, 1874, 2174
Mph1103I	ATGCAT	1 cut(s)	1927
MroXI	GAANNNNTTC	2 cut(s)	2823, 2913
MscI	TGGCCA	3 cut(s)	1374, 1874, 2174
MseI	TTAA	8 cut(s)	575, 1593, 1740, 1854, 2180, 2279, 2720, 3401
MslI	CAYNNNNRTG	2 cut(s)	525, 2787
Msp20I	TGGCCA	3 cut(s)	1374, 1874, 2174
MspA1I	CMGCKG	1 cut(s)	2776
MspCI	CTTAAG	1 cut(s)	574
MspI	CCGG	7 cut(s)	98, 156, 415, 433, 589, 698, 891
MspR9I	CCNGG	9 cut(s)	99, 156, 388, 590, 891, 1445, 1876, 2955, 3276
MunI	CAATTG	1 cut(s)	3085
Mva1269I	GAATGC	2 cut(s)	350, 1951
MvaI	CCWGG	5 cut(s)	388, 1445, 1876, 2955, 3276
MvnI	CGCG	3 cut(s)	84, 93, 3225
MwoI	GCNNNNNNNGC	7 cut(s)	90, 158, 185, 673, 1548, 1946, 2840
NciI	CCSGG	4 cut(s)	99, 156, 590, 891
NcoI	CCATGG	1 cut(s)	2151
NmuCI	GTSAC	4 cut(s)	392, 1703, 2399, 2501
NruI	TCGCGA	1 cut(s)	3225
NsbI	TGCGCA	1 cut(s)	1098
NsiI	ATGCAT	1 cut(s)	1927
NspI	RCATGY	3 cut(s)	955, 2288, 2534
NspV	TTCGAA	1 cut(s)	70
PciSI	GCTCTTC	1 cut(s)	259
PctI	GAATGC	2 cut(s)	350, 1951
PdmI	GAANNNNTTC	2 cut(s)	2823, 2913
PfoI	TCCNGGA	1 cut(s)	386
PleI	GAGTC	6 cut(s)	523, 734, 2129, 2225, 2650, 3294
PpsI	GAGTC	6 cut(s)	523, 734, 2129, 2225, 2650, 3294
PpuMI	RGGWCCY	3 cut(s)	1448, 3108, 3313
PshAI	GACNNNNGTC	2 cut(s)	1051, 2397
PsiI	TTATAA	2 cut(s)	786, 1400
Psp124BI	GAGCTC	1 cut(s)	60
Psp5II	RGGWCCY	3 cut(s)	1448, 3108, 3313
Psp6I	CCWGG	5 cut(s)	386, 1443, 1874, 2953, 3274
PspFI	CCCAGC	1 cut(s)	1999
PspGI	CCWGG	5 cut(s)	386, 1443, 1874, 2953, 3274
PspPPI	RGGWCCY	3 cut(s)	1448, 3108, 3313
PsrI	GAACNNNNNNTAC	2 cut(s)	2194, 2226
PstI	CTGCAG	2 cut(s)	1544, 2104
PstNI	CAGNNNCTG	1 cut(s)	3316
PsuI	RGATCY	5 cut(s)	140, 634, 821, 1579, 2068
PvuII	CAGCTG	1 cut(s)	2776
RruI	TCGCGA	1 cut(s)	3225
RsaI	GTAC	8 cut(s)	239, 814, 1343, 1600, 1631, 1813, 2212, 2541
RsaNI	GTAC	8 cut(s)	238, 813, 1342, 1599, 1630, 1812, 2211, 2540
RseI	CAYNNNNRTG	2 cut(s)	525, 2787
SacI	GAGCTC	1 cut(s)	60
SalI	GTCGAC	1 cut(s)	772
SapI	GCTCTTC	1 cut(s)	259
SaqAI	TTAA	8 cut(s)	575, 1593, 1740, 1854, 2180, 2279, 2720, 3401
ScaI	AGTACT	1 cut(s)	814
SchI	GAGTC	6 cut(s)	524, 734, 2129, 2225, 2650, 3295
ScrFI	CCNGG	9 cut(s)	99, 156, 388, 590, 891, 1445, 1876, 2955, 3276
SduI	GDGCHC	6 cut(s)	60, 254, 1553, 2248, 2551, 2737
SfaNI	GCATC	4 cut(s)	1094, 1676, 1912, 1957
SfcI	CTRYAG	4 cut(s)	754, 1540, 2100, 3251
SfuI	TTCGAA	1 cut(s)	70
SinI	GGWCC	9 cut(s)	102, 874, 924, 1448, 1984, 2978, 3108, 3313, 3454
SmiMI	CAYNNNNRTG	2 cut(s)	525, 2787
SmlI	CTYRAG	3 cut(s)	370, 574, 3421
SmoI	CTYRAG	3 cut(s)	370, 574, 3421
SpeI	ACTAGT	1 cut(s)	776
SspI	AATATT	2 cut(s)	1381, 1745
SstI	GAGCTC	1 cut(s)	60
StyD4I	CCNGG	9 cut(s)	97, 154, 386, 588, 889, 1443, 1874, 2953, 3274
StyI	CCWWGG	1 cut(s)	2151
TaaI	ACNGT	5 cut(s)	817, 2110, 2210, 2739, 3434
TaiI	ACGT	2 cut(s)	1472, 2841
TaqI	TCGA	9 cut(s)	70, 266, 513, 773, 1963, 2654, 2931, 3000, 3356
TaqII	GACCGA	1 cut(s)	2273
TatI	WGTACW	4 cut(s)	237, 812, 1341, 2539
TauI	GCSGC	8 cut(s)	80, 152, 164, 167, 213, 216, 350, 463
Tru1I	TTAA	8 cut(s)	575, 1593, 1740, 1854, 2180, 2279, 2720, 3401
Tru9I	TTAA	8 cut(s)	575, 1593, 1740, 1854, 2180, 2279, 2720, 3401
TscAI	CASTG	9 cut(s)	361, 403, 616, 1558, 2104, 2115, 2385, 2744, 3439
TseFI	GTSAC	4 cut(s)	392, 1703, 2399, 2501
Tsp45I	GTSAC	4 cut(s)	392, 1703, 2399, 2501
TspDTI	ATGAA	9 cut(s)	863, 1533, 1765, 1771, 2046, 3120, 3374, 3423, 3522
TspGWI	ACGGA	2 cut(s)	393, 1249
TspRI	CASTG	9 cut(s)	361, 403, 616, 1558, 2104, 2115, 2385, 2744, 3439
Vha464I	CTTAAG	1 cut(s)	574
VneI	GTGCAC	1 cut(s)	1549
VpaK11BI	GGWCC	9 cut(s)	102, 874, 924, 1448, 1984, 2978, 3108, 3313, 3454
XagI	CCTNNNNNAGG	1 cut(s)	3320
XapI	RAATTY	3 cut(s)	1482, 2899, 3361
XbaI	TCTAGA	4 cut(s)	137, 1088, 1906, 2867
XceI	RCATGY	3 cut(s)	955, 2288, 2534
XcmI	CCANNNNNNNNNTGG	3 cut(s)	1451, 2128, 2182
XmiI	GTMKAC	1 cut(s)	773
XmnI	GAANNNNTTC	2 cut(s)	2823, 2913
ZrmI	AGTACT	1 cut(s)	814
Zsp2I	ATGCAT	1 cut(s)	1927

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.