Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0003782

Physical Location & Seq

Genomic Coordinates Forward (+)

30324168 .. 30331109

Gene Structure 6942 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG313700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3726 bp

ATGTCAGTAGCAGCAATGGGGGTGTCTGATCCAAGCCAACTCCACTTGAAGAAAGAGCTCACCCAGATTCGAAAGGCCGCCCGCGTTCTCCGCGATCCGGGGACCACTTCTTCTTGGCGCTCTCCTTTGGCTTCCTCTAGATCTGCGGCGCCGGGAGCGGCGGTGGTTCCTTCTTCTACTTGTTCCACTTCCCACAATACCAACAATGGCGGCGGCGGCGACAACAAGAAGGTGTTCCTGTACAACTGGAAGGGCTCTTCCAAATCGTCGAGAAATGATGACTACGAAGAGGAGGAGGAGGAGGAGGATGATTATGGTGTTGAAGATGAGGATGAAGAAGCTTCTTCTGTTGCGGCATTGAGTGTGGATGACAGCTTGAGCCACGGAGATTCCAGGAGTGACGCCGGTGGTGGTCAGAGCCGGTCGTTGATGATGCTCCGGCGCAGATATCCGAATCTTCTACCGCCGCTCAAAGATGGTAATGGTAATGGTAATGGTAATGGTAAGAAAGCAAGTAAGAAAATCGAGTCCCATTCTCATGTTTTGTCCAAACATCAGCAGAAAGAGTTGATTCTTGGTAGGAACTTAAGAAAGGGAGGCCGGGATGAGCAATCCGATGACACTGAGGATTACTCTAATTCTGAGGATCTGAGGCACATTAGAGGGGCTTCCCCATTGCTCTTGAAGCTTAGGCACAAGCATTGGCCTCCGGCCTCCACTAATGTTAGGAGAAATGATAGTAGAGCAGAGGACTCTTCTTATTGCTATAGCACTCCTGCATTGTCGACTAGTTCTTATAATAGGTATGGTGTTCGGAATCCAAGTACTGTTGGATCTTGGGATGGAACTGCGACTTCAATGAATGATGGGGATGATGAGGTTGAGGACCATTTGGATATTCCGGGTAGCAAAGGATGTGGGATTCCTTGTTATTGGTCCAAAAAGACCCCAAAGCACAGAGGCATGTATGGAAGCTGTTGCTCCCCTTCGCTTTCTGATACTATAAGGAGAAAAGGAAGTGTCCTTTTGTGTGGAAGTCAAAATGTTTATCCTAGACGACGGGGGTCGTCGTCAGGTTCCAATAAGCGGAGAATTGCATCTAGAAGTGCGCAAGGTGTTCTGCCATTGCTAAACAATAGTGGTGATGGTAGAGGAGGGTCATCCATAGGAACTGGGAGGAGTGATGACGAACTCTCCACAAACTTTGGGGAACTTGATTTGGAAGCTTTGAGTAGATTGGATGGACGGAGATGGTCAAGCTGCCGAAGTCAAGAAGGCTTGGAGATTGTGGCTCTGAGTGGAGTGGGGGAAGAGGAAAGCACTCCAGATAGTGTTAGAAGTTTTAGCCAGAAGTACAAGCCGATGTTCTTTCGTGAATTGATTGGCCAGAATATTGTGGTGCAATCACTTATAAATGCTATTGATAGGTGTAGGATTGCTCCCGTTTATCTTTTCCAGGGACCCCGTGGAACTGGAAAAACGTCAACAGCTAGAATTTTTGCTGCTTCCTTGAATTGCCTAGCTCCTGATGAAACTAAACCCTGTGGCTACTGCAGGGAGTGCACTGATTTTATGTCTGGTAAGAACAAGGATCTATTGGAAGTTGATGGTACCAATAAGAAAGGAATTGATAAAGTCAGGTACCTATTGAAAACTCTATCTGTGGCTCCCTCATCAGCATCATCAAGGTATAAGGTTTTTGTGATTGATGAGTGTCACCTATTGCCTTCTAAAACATGGTTGGCATTTCTTAAATATTTGGAAGAACCACCGCAGCGAGTTGTCTTCATATTCATTACAACTGATTTGGATAATGTTCCTCGTACCATACAATCTCGGTGTCAGAAATATCTCTTCAACAAAATTAAGGATAGTGAGATTGTGGCCAGGTTGAGGAAAATTGCTGTTGAAGAGAACCTAGATGTTGAACCAGATGCATTAGATTTGATTGCTTTGAATGCAGATGGTTCACTTCGAGATGCAGAAACTATGTTGGACCAGTTGAGTTTGCTGGGGAAAAGAATTTCAACATCTCTTGTGAATGAACTTGTGGGAGTTGTTTCCGATGACAAGTTACTAGATCTTTTGGAGTTAGCAATGTCATCGGACACTGCAGAAACAGTGAAAAGGGCCAGAGATTTGATGGACTCCGGGGTTGATCCCATGGTTTTGATGTCTCAGTTGGCCAGCTTAATTATGGACATCATTGCGGGAACCAACGGTACTAATGATGTCAAACATGACTCCTTATATGGTGCTCGGAACTTGACCGAAGCAGAATTGGAGAGATTAAAACATGCTCTGAAGATTCTTTCGGAGGCTGAAAAGCAGCTTAGGGTTTCAAGTGAGCGCTCAACATGGTTTACAGCGACTCTGTTGCAGCTTGGTTCAGTGCCTTCTCCAGACCTTAGTCACTCATGCAGCAGGAGGCATAGCTGCAAGACAACTGAGGATGATTCTTCAAGTGCTTCAACTTCAAGAGAAGCAGCCACTTACAAACAGAAGTTAGATGGTCACTATATACTACAAAAATCAACTCAACATGCTTCTGTACAAAGAGCACCAAATGACAATTCCAACCATCAGGGAGATTCGTTGTCAAGAAATAATGGTTTCGGTGTGAATACCAAGCCCTCACATGATCAGTTCGTGGATAATGGTGCCTCAACTCCCTTGTGTGGAAATGTTACGGCTGGAAATATGAGCCTTAGATGTGTAAACTCTGAAAAGTTAAATGATGTATGGGCACATTGTATTGAGAAGTGTCATTCAAAGACATTGAGGCAGCTACTACATTCTCATGGAAAGCTAGTGTCTATATCTGAAGCTGAAGGTGTTCTGGTTGCTTATGTTGCATTTGAAGATGGAAGTATCAAATCTAGAGCAGAGAGATTTGTGAGCAGTATCACAAATTCAATGGAAATAGTTCTCAGACGCAATGTCGAGGTTAGAATTGTCCACTTGCCAGGTGGGGAGGCTTCTCTAAATGGTCCAAGTCCAGTTCACTTGCTCGAAGGTCTAAAGCAGGCAGGAACTATGGCAGAACTTGTCAGGGAAAGGAAAAGAGTTGGTTCAAATGCCACAGATGGTTATTCCAATTGTTCTCTGTTTCTGGATGGGACCCACAAGTCAACCTCTGATTCATCAGACTTAGTTGCAGATGGCAATGCTCAAACAAGTGATACAAGAGAGAGCGGACAGGAGATCCCAATGCAGAGAATAGAATCCATTATTCGCGACCAAAGGTTAGAGACTGCGTGGCTACAAGTTGCAGAGAAAGGCACCCCTGGTTCTTTGAGTCGTTTGAAACCTGAAAAGAATCAGGTCCTGCCTCAGGATGGCATTTATTACGAAGATCAGATGGAATCGATGAATTCAATGGGATTATCCTCTCAGCAATGGGATGATGGATTAAACCATGAAGTAAAAATCTTGAGTGCTAACAGTGGGAAGGTCATTCTGCAGGACCAAATAGGTAAAAGGGTTGATCATTATCCTATGTCCCCGAGTTTACTACATGAAAAGGGCAAGTCCGACAAAGATCACCTGGGTGATGAATCAGGGTCAGGTAGAGGAGGTTGCAGTGGATTTTTTCGTTGTTATAACACTAGACGTTGTAAAAGAGGAAAGGTAAAAGGGACCCCTGTTCAACCACGCAAAGGTAGACGGTTTTCATTGTTTGGTGTGTGTGGCAAGTCAAGGAAGAAAGCAGAGAAGACAAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005663 GO:0005694 GO:0005886 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009653 GO:0009888 GO:0009987 GO:0010026 GO:0010090 GO:0010091 GO:0016020 GO:0016043 GO:0030154 GO:0032502 GO:0032989 GO:0032991 GO:0033554 GO:0034641 GO:0034645 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0046483 GO:0048468 GO:0048856 GO:0048869 GO:0050896 GO:0051716 GO:0071704 GO:0071840 GO:0071944 GO:0090304 GO:0090558 GO:0090626 GO:1901360 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DNA_pol3_delta2 DNA_pol3_gamma3

Protein Analysis

1241

Amino Acids

136.12

Weight (kDa)

8.2

Isoelectric Point (pI)

49.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DNA_pol3_delta2	PF13177	463 - 622	2.8e-34	DNA polymerase III, delta subunit
AAA	PF00004	484 - 619	8.7e-09	ATPase family associated with various cellular activities (AAA)
DNAX_ATPase_lid	PF22608	626 - 667	1e-09	DNA polymerase III clamp loader subunit, ATPase lid domain
DNA_pol3_gamma3	PF12169	676 - 797	1.6e-08	DNA polymerase III subunits gamma and tau domain III
DnaA_N-like_STI	PF23007	904 - 985	1e-30	STICHEL, DnaA_N-like alpha-beta domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003782)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14460 AT2G02480 AT2G02480
fragaria_vesca	FvH4_5g27450 FvH4_5g27450
malus_domestica	MD08G1249500.v1.1
prunus_persica	Prupe.1G586700_v2.0.a1 Prupe.1G586700_v2.0.a1 Prupe.1G586700_v2.0.a1 Prupe.1G586700_v2.0.a1 Prupe.1G586700_v2.0.a1
pyrus_communis	pycom08g21590
rosa_chinensis	RchiOBHm_Chr2g0146641 RchiOBHm_Chr7g0218871
rosa_laevigata	RLG00000001635 RLG00000002346 RLG00000002355
rosa_multiflora	Rmu_sc0003823.1_g000001 Rmu_sc0006998.1_g000001
rosa_roxburghii	Rroxscaffold_3G00240440
rosa_rugosa	Rorug07G0179300
rosa_samantha	Rh3AG021300 Rh3CG020600 Rh5BG537900 Rh5CG561800 Rh7AG322600 Rh7BG313700 Rh7CG339400 Rh7DG319800 Rh7DG389400
rosa_wichuraiana	Rw5G027500 Rw7G026930 Rw7G027310 Rw7G028430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	798, 1412, 3603
AasI	GACNNNNNNGTC	1 cut(s)	3127
Acc16I	TGCGCA	1 cut(s)	1110
Acc65I	GGTACC	2 cut(s)	1610, 1641
AccB1I	GGYRCC	5 cut(s)	148, 1610, 1641, 2660, 3281
AccBSI	CCGCTC	3 cut(s)	158, 469, 3195
AccI	GTMKAC	2 cut(s)	785, 3664
AccII	CGCG	3 cut(s)	84, 93, 3237
AclWI	GGATC	7 cut(s)	23, 89, 654, 841, 1599, 2153, 3199
AcoI	YGGCCR	3 cut(s)	1384, 1884, 2184
AcsI	RAATTY	4 cut(s)	1494, 2022, 2911, 3373
AcuI	CTGAAG	3 cut(s)	2324, 2844, 2850
AcyI	GRCGYC	2 cut(s)	149, 402
AfaI	GTAC	8 cut(s)	242, 826, 1355, 1612, 1643, 1825, 2224, 2553
AfeI	AGCGCT	1 cut(s)	2351
AfiI	CCNNNNNNNGG	7 cut(s)	97, 1086, 1893, 2678, 3334, 3338, 3659
AflII	CTTAAG	1 cut(s)	586
AhdI	GACNNNNNGTC	1 cut(s)	2939
AhlI	ACTAGT	1 cut(s)	788
AjnI	CCWGG	6 cut(s)	392, 1455, 1886, 2965, 3286, 3546
AjuI	GAANNNNNNNTTGG	2 cut(s)	2557, 2589
AleI	CACNNNNGTG	1 cut(s)	3549
Alw21I	GWGCWC	4 cut(s)	60, 1565, 2260, 2563
Alw26I	GTCTC	2 cut(s)	2181, 3245
Alw44I	GTGCAC	1 cut(s)	1561
AlwI	GGATC	7 cut(s)	23, 89, 654, 841, 1599, 2153, 3199
AlwNI	CAGNNNCTG	1 cut(s)	3328
Ama87I	CYCGRG	1 cut(s)	3505
Aor51HI	AGCGCT	1 cut(s)	2351
AoxI	GGCC	8 cut(s)	75, 598, 704, 711, 1384, 1884, 2130, 2184
ApaLI	GTGCAC	1 cut(s)	1561
ApoI	RAATTY	4 cut(s)	1494, 2022, 2911, 3373
Asp700I	GAANNNNTTC	3 cut(s)	233, 2835, 2925
Asp718I	GGTACC	2 cut(s)	1610, 1641
AspLEI	GCGC	5 cut(s)	120, 151, 444, 1111, 2352
AsuC2I	CCSGG	5 cut(s)	99, 153, 602, 903, 2152
AsuHPI	GGTGA	5 cut(s)	52, 1154, 1709, 3536, 3563
AsuII	TTCGAA	1 cut(s)	70
AvaI	CYCGRG	1 cut(s)	3505
AxyI	CCTNAGG	1 cut(s)	3333
BaeGI	GKGCMC	2 cut(s)	1565, 2749
BalI	TGGCCA	3 cut(s)	1386, 1886, 2186
BanI	GGYRCC	5 cut(s)	148, 1610, 1641, 2660, 3281
BanII	GRGCYC	2 cut(s)	60, 257
BbsI	GAAGAC	2 cut(s)	1777, 3722
Bbv12I	GWGCWC	4 cut(s)	60, 1565, 2260, 2563
BceAI	ACGGC	1 cut(s)	2706
BcgI	CGANNNNNNTGC	4 cut(s)	2085, 2119, 2359, 2393
BciT130I	CCWGG	6 cut(s)	394, 1457, 1888, 2967, 3288, 3548
BclI	TGATCA	2 cut(s)	2641, 3487
BcnI	CCSGG	5 cut(s)	99, 153, 602, 903, 2152
BcoDI	GTCTC	2 cut(s)	2181, 3245
BcuI	ACTAGT	1 cut(s)	788
BfmI	CTRYAG	4 cut(s)	766, 1552, 2112, 3461
BfoI	RGCGCY	3 cut(s)	121, 152, 2353
BfrI	CTTAAG	1 cut(s)	586
BglII	AGATCT	2 cut(s)	140, 2080
BmcAI	AGTACT	1 cut(s)	826
BmeRI	GACNNNNNGTC	1 cut(s)	2939
BmeT110I	CYCGRG	1 cut(s)	3505
BmrI	ACTGGG	1 cut(s)	1182
BmsI	GCATC	5 cut(s)	423, 1106, 1688, 1924, 1969
BmuI	ACTGGG	1 cut(s)	1182
BoxI	GACNNNNGTC	2 cut(s)	1063, 2409
BpiI	GAAGAC	2 cut(s)	1777, 3722
BplI	GAGNNNNNCTC	2 cut(s)	617, 649
BpmI	CTGGAG	2 cut(s)	1308, 2385
Bpu10I	CCTNAGC	2 cut(s)	689, 2333
Bpu14I	TTCGAA	1 cut(s)	70
BpuEI	CTTGAG	2 cut(s)	397, 3454
BpuMI	CCSGG	5 cut(s)	99, 153, 602, 903, 2152
Bsa29I	ATCGAT	1 cut(s)	3368
BsaBI	GATNNNNATC	1 cut(s)	3492
BsaHI	GRCGYC	2 cut(s)	149, 402
BsaJI	CCNNGG	8 cut(s)	98, 382, 1456, 1465, 2151, 2163, 3286, 3547
BsaXI	ACNNNNNCTCC	4 cut(s)	147, 177, 1178, 1208
Bsc4I	CCNNNNNNNGG	7 cut(s)	97, 1086, 1893, 2678, 3334, 3338, 3659
Bse118I	RCCGGY	2 cut(s)	404, 420
Bse1I	ACTGG	5 cut(s)	251, 1177, 1477, 1999, 2999
Bse21I	CCTNAGG	1 cut(s)	3333
Bse3DI	GCAATG	8 cut(s)	21, 674, 1124, 2103, 2205, 2944, 3172, 3404
Bse8I	GATNNNNATC	1 cut(s)	3492
BseBI	CCWGG	6 cut(s)	394, 1457, 1888, 2967, 3288, 3548
BseCI	ATCGAT	1 cut(s)	3368
BseDI	CCNNGG	8 cut(s)	98, 382, 1456, 1465, 2151, 2163, 3286, 3547
BseJI	GATNNNNATC	1 cut(s)	3492
BseLI	CCNNNNNNNGG	7 cut(s)	97, 1086, 1893, 2678, 3334, 3338, 3659
BseMI	GCAATG	8 cut(s)	21, 674, 1124, 2103, 2205, 2944, 3172, 3404
BseMII	CTCAG	9 cut(s)	615, 633, 641, 1286, 2192, 2439, 2944, 3347, 3407
BseNI	ACTGG	5 cut(s)	251, 1177, 1477, 1999, 2999
BseRI	GAGGAG	8 cut(s)	305, 308, 311, 314, 317, 1167, 1192, 3588
BseSI	GKGCMC	2 cut(s)	1565, 2749
BseYI	CCCAGC	1 cut(s)	2011
Bsh1236I	CGCG	3 cut(s)	84, 93, 3237
Bsh1285I	CGRYCG	1 cut(s)	425
BshFI	GGCC	8 cut(s)	77, 600, 706, 713, 1386, 1886, 2132, 2186
BshNI	GGYRCC	5 cut(s)	148, 1610, 1641, 2660, 3281
BshVI	ATCGAT	1 cut(s)	3368
BsiEI	CGRYCG	1 cut(s)	425
BsiHKAI	GWGCWC	4 cut(s)	60, 1565, 2260, 2563
BsiHKCI	CYCGRG	1 cut(s)	3505
BsiSI	CCGG	9 cut(s)	98, 152, 405, 421, 439, 601, 710, 902, 2151
BslFI	GGGAC	6 cut(s)	115, 514, 1473, 3133, 3487, 3652
BslI	CCNNNNNNNGG	7 cut(s)	97, 1086, 1893, 2678, 3334, 3338, 3659
BsmAI	GTCTC	2 cut(s)	2181, 3245
BsmFI	GGGAC	6 cut(s)	115, 514, 1473, 3133, 3487, 3652
BsmI	GAATGC	1 cut(s)	1963
BsnI	GGCC	8 cut(s)	77, 600, 706, 713, 1386, 1886, 2132, 2186
BsoBI	CYCGRG	1 cut(s)	3505
Bsp119I	TTCGAA	1 cut(s)	70
Bsp1286I	GDGCHC	6 cut(s)	60, 257, 1565, 2260, 2563, 2749
Bsp1407I	TGTACA	2 cut(s)	240, 2551
Bsp19I	CCATGG	1 cut(s)	2163
Bsp68I	TCGCGA	1 cut(s)	3237
BspANI	GGCC	8 cut(s)	77, 600, 706, 713, 1386, 1886, 2132, 2186
BspCNI	CTCAG	9 cut(s)	616, 634, 642, 1287, 2191, 2440, 2943, 3346, 3406
BspDI	ATCGAT	1 cut(s)	3368
BspFNI	CGCG	3 cut(s)	84, 93, 3237
BspMAI	CTGCAG	3 cut(s)	1556, 2116, 3465
BspPI	GGATC	7 cut(s)	23, 89, 654, 841, 1599, 2153, 3199
BspQI	GCTCTTC	1 cut(s)	262
BspT104I	TTCGAA	1 cut(s)	70
BspT107I	GGYRCC	5 cut(s)	148, 1610, 1641, 2660, 3281
BspTI	CTTAAG	1 cut(s)	586
BsrBI	CCGCTC	3 cut(s)	158, 469, 3195
BsrDI	GCAATG	8 cut(s)	21, 674, 1124, 2103, 2205, 2944, 3172, 3404
BsrFI	RCCGGY	2 cut(s)	404, 420
BsrGI	TGTACA	2 cut(s)	240, 2551
BsrI	ACTGG	5 cut(s)	251, 1177, 1477, 1999, 2999
BssAI	RCCGGY	2 cut(s)	404, 420
BssECI	CCNNGG	8 cut(s)	98, 382, 1456, 1465, 2151, 2163, 3286, 3547
BssNI	GRCGYC	2 cut(s)	149, 402
BssT1I	CCWWGG	1 cut(s)	2163
Bst2UI	CCWGG	6 cut(s)	394, 1457, 1888, 2967, 3288, 3548
Bst4CI	ACNGT	5 cut(s)	829, 2122, 2222, 3446, 3669
Bst6I	CTCTTC	6 cut(s)	262, 282, 760, 1305, 1859, 1905
BstACI	GRCGYC	2 cut(s)	149, 402
BstAFI	CTTAAG	1 cut(s)	586
BstAPI	GCANNNNNTGC	1 cut(s)	1560
BstAUI	TGTACA	2 cut(s)	240, 2551
BstBI	TTCGAA	1 cut(s)	70
BstC8I	GCNNGC	3 cut(s)	82, 2188, 3027
BstDSI	CCRYGG	3 cut(s)	382, 1465, 2163
BstENI	CCTNNNNNAGG	1 cut(s)	3332
BstFNI	CGCG	3 cut(s)	84, 93, 3237
BstH2I	RGCGCY	3 cut(s)	121, 152, 2353
BstHHI	GCGC	5 cut(s)	120, 151, 444, 1111, 2352
BstMAI	GTCTC	2 cut(s)	2181, 3245
BstMCI	CGRYCG	1 cut(s)	425
BstMWI	GCNNNNNNNGC	7 cut(s)	90, 155, 216, 685, 1560, 1958, 2852
BstNI	CCWGG	6 cut(s)	394, 1457, 1888, 2967, 3288, 3548
BstNSI	RCATGY	3 cut(s)	967, 2300, 2546
BstPAI	GACNNNNGTC	2 cut(s)	1063, 2409
BstSFI	CTRYAG	4 cut(s)	766, 1552, 2112, 3461
BstSLI	GKGCMC	2 cut(s)	1565, 2749
BstUI	CGCG	3 cut(s)	84, 93, 3237
BstV2I	GAAGAC	2 cut(s)	1777, 3722
BstX2I	RGATCY	6 cut(s)	140, 646, 833, 1591, 2080, 3204
BstYI	RGATCY	6 cut(s)	140, 646, 833, 1591, 2080, 3204
Bsu15I	ATCGAT	1 cut(s)	3368
Bsu36I	CCTNAGG	1 cut(s)	3333
BsuRI	GGCC	8 cut(s)	77, 600, 706, 713, 1386, 1886, 2132, 2186
BsuTUI	ATCGAT	1 cut(s)	3368
BtgI	CCRYGG	3 cut(s)	382, 1465, 2163
BtsI	GCAGTG	2 cut(s)	2109, 3589
BtsIMutI	CAGTG	7 cut(s)	621, 1563, 2109, 2127, 2397, 3451, 3589
BtuMI	TCGCGA	1 cut(s)	3237
Cac8I	GCNNGC	3 cut(s)	82, 2188, 3027
CaiI	CAGNNNCTG	1 cut(s)	3328
CfoI	GCGC	5 cut(s)	120, 151, 444, 1111, 2352
Cfr10I	RCCGGY	2 cut(s)	404, 420
ClaI	ATCGAT	1 cut(s)	3368
CseI	GACGC	2 cut(s)	410, 2943
Csp6I	GTAC	8 cut(s)	241, 825, 1354, 1611, 1642, 1824, 2223, 2552
CspCI	CAANNNNNGTGG	4 cut(s)	898, 933, 1186, 1221
CviQI	GTAC	8 cut(s)	241, 825, 1354, 1611, 1642, 1824, 2223, 2552
DinI	GGCGCC	1 cut(s)	150
DrdI	GACNNNNNNGTC	1 cut(s)	3127
DriI	GACNNNNNGTC	1 cut(s)	2939
DseDI	GACNNNNNNGTC	1 cut(s)	3127
EaeI	YGGCCR	3 cut(s)	1384, 1884, 2184
Eam1104I	CTCTTC	6 cut(s)	262, 282, 760, 1305, 1859, 1905
Eam1105I	GACNNNNNGTC	1 cut(s)	2939
EarI	CTCTTC	6 cut(s)	262, 282, 760, 1305, 1859, 1905
Ecl136II	GAGCTC	1 cut(s)	58
Eco130I	CCWWGG	1 cut(s)	2163
Eco24I	GRGCYC	2 cut(s)	60, 257
Eco32I	GATATC	1 cut(s)	449
Eco47III	AGCGCT	1 cut(s)	2351
Eco53kI	GAGCTC	1 cut(s)	58
Eco57I	CTGAAG	3 cut(s)	2324, 2844, 2850
Eco81I	CCTNAGG	1 cut(s)	3333
Eco88I	CYCGRG	1 cut(s)	3505
EcoICRI	GAGCTC	1 cut(s)	58
EcoNI	CCTNNNNNAGG	1 cut(s)	3332
EcoO109I	RGGNCCY	4 cut(s)	1460, 3120, 3325, 3639
EcoRI	GAATTC	1 cut(s)	3373
EcoRII	CCWGG	6 cut(s)	392, 1455, 1886, 2965, 3286, 3546
EcoRV	GATATC	1 cut(s)	449
EcoT14I	CCWWGG	1 cut(s)	2163
EcoT22I	ATGCAT	1 cut(s)	1939
EcoT38I	GRGCYC	2 cut(s)	60, 257
EgeI	GGCGCC	1 cut(s)	150
EheI	GGCGCC	1 cut(s)	150
ErhI	CCWWGG	1 cut(s)	2163
FaqI	GGGAC	6 cut(s)	115, 514, 1473, 3133, 3487, 3652
FauI	CCCGC	2 cut(s)	89, 2203
FbaI	TGATCA	2 cut(s)	2641, 3487
FblI	GTMKAC	2 cut(s)	785, 3664
FriOI	GRGCYC	2 cut(s)	60, 257
FspI	TGCGCA	1 cut(s)	1110
GlaI	GCGC	5 cut(s)	119, 150, 443, 1110, 2351
GsaI	CCCAGC	1 cut(s)	2015
GsuI	CTGGAG	2 cut(s)	1308, 2385
HaeII	RGCGCY	3 cut(s)	121, 152, 2353
HaeIII	GGCC	8 cut(s)	77, 600, 706, 713, 1386, 1886, 2132, 2186
HapII	CCGG	9 cut(s)	98, 152, 405, 421, 439, 601, 710, 902, 2151
HgaI	GACGC	2 cut(s)	410, 2943
HhaI	GCGC	5 cut(s)	120, 151, 444, 1111, 2352
Hin1I	GRCGYC	2 cut(s)	149, 402
Hin6I	GCGC	5 cut(s)	118, 149, 442, 1109, 2350
HinP1I	GCGC	5 cut(s)	118, 149, 442, 1109, 2350
HincII	GTYRAC	3 cut(s)	786, 1485, 3132
HindII	GTYRAC	3 cut(s)	786, 1485, 3132
HindIII	AAGCTT	3 cut(s)	339, 686, 1224
HpaII	CCGG	9 cut(s)	98, 152, 405, 421, 439, 601, 710, 902, 2151
HphI	GGTGA	5 cut(s)	52, 1154, 1709, 3536, 3563
Hpy99I	CGWCG	3 cut(s)	271, 1062, 1072
HpyCH4III	ACNGT	5 cut(s)	829, 2122, 2222, 3446, 3669
HpyCH4IV	ACGT	2 cut(s)	1481, 3613
HpyF10VI	GCNNNNNNNGC	7 cut(s)	90, 155, 216, 685, 1560, 1958, 2852
HpySE526I	ACGT	2 cut(s)	1481, 3613
Hsp92I	GRCGYC	2 cut(s)	149, 402
HspAI	GCGC	5 cut(s)	118, 149, 442, 1109, 2350
KasI	GGCGCC	1 cut(s)	148
KflI	GGGWCCC	3 cut(s)	1460, 3120, 3639
KpnI	GGTACC	2 cut(s)	1614, 1645
Ksp22I	TGATCA	2 cut(s)	2641, 3487
LguI	GCTCTTC	1 cut(s)	262
LmnI	GCTCC	6 cut(s)	155, 441, 986, 1444, 1528, 1672
LweI	GCATC	5 cut(s)	423, 1106, 1688, 1924, 1969
MaeII	ACGT	2 cut(s)	1481, 3613
MaeIII	GTNAC	6 cut(s)	398, 1715, 2073, 2411, 2513, 2686
MbiI	CCGCTC	3 cut(s)	158, 469, 3195
MfeI	CAATTG	1 cut(s)	3097
MflI	RGATCY	6 cut(s)	140, 646, 833, 1591, 2080, 3204
MhlI	GDGCHC	6 cut(s)	60, 257, 1565, 2260, 2563, 2749
MlsI	TGGCCA	3 cut(s)	1386, 1886, 2186
MluNI	TGGCCA	3 cut(s)	1386, 1886, 2186
Mly113I	GGCGCC	1 cut(s)	149
MlyI	GAGTC	6 cut(s)	536, 746, 2141, 2237, 2365, 3307
MmeI	TCCRAC	4 cut(s)	811, 1974, 2601, 3558
Mox20I	TGGCCA	3 cut(s)	1386, 1886, 2186
Mph1103I	ATGCAT	1 cut(s)	1939
MroXI	GAANNNNTTC	3 cut(s)	233, 2835, 2925
MscI	TGGCCA	3 cut(s)	1386, 1886, 2186
MseI	TTAA	7 cut(s)	587, 1752, 1866, 2192, 2291, 2732, 3413
MslI	CAYNNNNRTG	3 cut(s)	537, 2799, 3549
Msp20I	TGGCCA	3 cut(s)	1386, 1886, 2186
MspCI	CTTAAG	1 cut(s)	586
MspI	CCGG	9 cut(s)	98, 152, 405, 421, 439, 601, 710, 902, 2151
MunI	CAATTG	1 cut(s)	3097
Mva1269I	GAATGC	1 cut(s)	1963
MvaI	CCWGG	6 cut(s)	394, 1457, 1888, 2967, 3288, 3548
MvnI	CGCG	3 cut(s)	84, 93, 3237
MwoI	GCNNNNNNNGC	7 cut(s)	90, 155, 216, 685, 1560, 1958, 2852
NarI	GGCGCC	1 cut(s)	149
NciI	CCSGG	5 cut(s)	99, 153, 602, 903, 2152
NcoI	CCATGG	1 cut(s)	2163
NmuCI	GTSAC	4 cut(s)	398, 1715, 2411, 2513
NruI	TCGCGA	1 cut(s)	3237
NsbI	TGCGCA	1 cut(s)	1110
NsiI	ATGCAT	1 cut(s)	1939
NspI	RCATGY	3 cut(s)	967, 2300, 2546
NspV	TTCGAA	1 cut(s)	70
OliI	CACNNNNGTG	1 cut(s)	3549
PciSI	GCTCTTC	1 cut(s)	262
PctI	GAATGC	1 cut(s)	1963
PdmI	GAANNNNTTC	3 cut(s)	233, 2835, 2925
PfoI	TCCNGGA	1 cut(s)	392
PleI	GAGTC	6 cut(s)	535, 746, 2141, 2237, 2365, 3306
PluTI	GGCGCC	1 cut(s)	152
PpsI	GAGTC	6 cut(s)	535, 746, 2141, 2237, 2365, 3306
PpuMI	RGGWCCY	4 cut(s)	1460, 3120, 3325, 3639
PshAI	GACNNNNGTC	2 cut(s)	1063, 2409
PsiI	TTATAA	3 cut(s)	798, 1412, 3603
Psp124BI	GAGCTC	1 cut(s)	60
Psp5II	RGGWCCY	4 cut(s)	1460, 3120, 3325, 3639
Psp6I	CCWGG	6 cut(s)	392, 1455, 1886, 2965, 3286, 3546
PspFI	CCCAGC	1 cut(s)	2011
PspGI	CCWGG	6 cut(s)	392, 1455, 1886, 2965, 3286, 3546
PspPPI	RGGWCCY	4 cut(s)	1460, 3120, 3325, 3639
PsrI	GAACNNNNNNTAC	2 cut(s)	2206, 2238
PstI	CTGCAG	3 cut(s)	1556, 2116, 3465
PstNI	CAGNNNCTG	1 cut(s)	3328
PsuI	RGATCY	6 cut(s)	140, 646, 833, 1591, 2080, 3204
RruI	TCGCGA	1 cut(s)	3237
RsaI	GTAC	8 cut(s)	242, 826, 1355, 1612, 1643, 1825, 2224, 2553
RsaNI	GTAC	8 cut(s)	241, 825, 1354, 1611, 1642, 1824, 2223, 2552
RseI	CAYNNNNRTG	3 cut(s)	537, 2799, 3549
SacI	GAGCTC	1 cut(s)	60
SalI	GTCGAC	1 cut(s)	784
SapI	GCTCTTC	1 cut(s)	262
SaqAI	TTAA	7 cut(s)	587, 1752, 1866, 2192, 2291, 2732, 3413
ScaI	AGTACT	1 cut(s)	826
SchI	GAGTC	6 cut(s)	536, 746, 2141, 2237, 2365, 3307
SduI	GDGCHC	6 cut(s)	60, 257, 1565, 2260, 2563, 2749
SfaNI	GCATC	5 cut(s)	423, 1106, 1688, 1924, 1969
SfcI	CTRYAG	4 cut(s)	766, 1552, 2112, 3461
SfoI	GGCGCC	1 cut(s)	150
SfuI	TTCGAA	1 cut(s)	70
SgrAI	CRCCGGYG	1 cut(s)	404
SmiMI	CAYNNNNRTG	3 cut(s)	537, 2799, 3549
SmlI	CTYRAG	3 cut(s)	376, 586, 3433
SmoI	CTYRAG	3 cut(s)	376, 586, 3433
SpeI	ACTAGT	1 cut(s)	788
SspDI	GGCGCC	1 cut(s)	148
SspI	AATATT	2 cut(s)	1393, 1757
SstI	GAGCTC	1 cut(s)	60
StyI	CCWWGG	1 cut(s)	2163
TaaI	ACNGT	5 cut(s)	829, 2122, 2222, 3446, 3669
TaiI	ACGT	2 cut(s)	1484, 3616
TaqI	TCGA	8 cut(s)	70, 269, 525, 785, 1975, 2943, 3012, 3368
TaqII	GACCGA	1 cut(s)	2285
TatI	WGTACW	4 cut(s)	240, 824, 1353, 2551
TauI	GCSGC	8 cut(s)	80, 149, 161, 213, 216, 219, 356, 469
Tru1I	TTAA	7 cut(s)	587, 1752, 1866, 2192, 2291, 2732, 3413
Tru9I	TTAA	7 cut(s)	587, 1752, 1866, 2192, 2291, 2732, 3413
TscAI	CASTG	7 cut(s)	628, 1570, 2116, 2127, 2397, 3451, 3589
TseFI	GTSAC	4 cut(s)	398, 1715, 2411, 2513
Tsp45I	GTSAC	4 cut(s)	398, 1715, 2411, 2513
TspGWI	ACGGA	2 cut(s)	399, 1261
TspRI	CASTG	7 cut(s)	628, 1570, 2116, 2127, 2397, 3451, 3589
Vha464I	CTTAAG	1 cut(s)	586
VneI	GTGCAC	1 cut(s)	1561
XagI	CCTNNNNNAGG	1 cut(s)	3332
XapI	RAATTY	4 cut(s)	1494, 2022, 2911, 3373
XbaI	TCTAGA	3 cut(s)	137, 1100, 2879
XceI	RCATGY	3 cut(s)	967, 2300, 2546
XcmI	CCANNNNNNNNNTGG	4 cut(s)	1463, 2140, 2194, 2966
XmiI	GTMKAC	2 cut(s)	785, 3664
XmnI	GAANNNNTTC	3 cut(s)	233, 2835, 2925
ZrmI	AGTACT	1 cut(s)	826
Zsp2I	ATGCAT	1 cut(s)	1939

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.