Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0003782

Physical Location & Seq

Genomic Coordinates Forward (+)

32668171 .. 32677405

Gene Structure 9235 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000002355

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4533 bp

ATGGCGAAGAACGACGCGTCGTCGTTGGCGTTGGGATCGGTGGACGAGTTCCTGAAGCGGTGCGAGCAATCCGGCGATGCCGCGTACTCTGCTCTGAGATCAGTGCTGGAGCGTCTCGAGGATCCGAAAACCCGAACTCAAGCTCGGATCTTCCTCTCCAACCTCCAGAAGCGCTTCCCTACCAAGGACGACTGCGATCACTGCTTCCGTACCTATCATTTCCAGATTGAGGACATCTTCTTCGATCAGTATCAAGGTTACCAGGGTAGGAAGAAATTGACAATGATGGTTATCCCTAGCATTTTTGTTCCAGAAGATTGGTCCTTCACTTTTTTCGAAGGACTAAATAGACATCCAGACTCTATCTTTAAGGACAAGTCACTTGCTGAGCTTGGCTGTGGAAATGGTTGGATATCCATTGCCATTGCTGAGAAGTGGTTGCCATCCAAGGTGTATGGTCTCGATATCAATCCTAGAGCTGTCAAGATGTCATGGATAAATTTGTATTTAAATGCTTTGGACGAGGAAGGTCAGCCCATCTATGATGCTGAGAAAAAGACCTTGCTGGACAGGGTTGAGTTTCATGAATCAGATCTCCTATCTTATTGCAGAGACAATGATATTCAACTAGAACGAATTGTTGGTTGCATCCCTCAGATTCTTAACCCGAATCCAGATGCAATGTCTAAGATGATAACTGAGAATGCAAGTGAGGAATTTCTACATTCATTGAGCAATTATTGTGCGCTTCAGGGTTTTCTTGAGGATCAATTTGGCTTAGGTCTAATTGCTAGGGCAGTGGAGGAAGGAATAGCTGTCATCAAACCTATGGGGATAATGATCTTCAACATGGGAGGGCGTCCAGGACAAGCTGTTTGTAAACGCTTGTTTGAACGCCGTGGCTTTCTTGTTAACAAGCTTTGGCAGACTAAAATTCTTCAGGCTGCAGACACAGATATATCAGCATTAGTTGAAATTGAAAAGAACATTTCACACCGTTTTGAGTTCTTCATGGTACTTTCTGGAGATCAGCCTATTTGTGCTCGAACAGCATGGGCATATGGAAATGCCGGTGGTCGAATCTCGCACGCTTTATCAGTTTACAGCTGTCAACTCCGCCAACCAAATCAGGTCAAGACAATTTTTGAGTTTCTTAAGAATGGCTTCCACGACATTAGCAGTTCTTTAGATTTATCGTTTGAAGATGATTCAGTGGCTGATGAGAAGATTCCCTTCCTAGCTTATCTTTCCAGTGTTCTGAAAGGGAGTTCTTTCTGCAAGTATGAACCACCAGCTGGAAGCAAACATTTTCGCAACCTCATTGCTGGGTTTTTGAGAACATATCACCGTGTTCCACTCACTACTGATAAAGAGTTGATTCTTGGTAGGAACTTAAGAAAGGGAGGCCGGGATGAGCAATCCGATGACACTGAGGATTACTCTAATTCTGAGGATCTGAGGCACATTAGAGGGGCTTCCCCATTGCTCTTGAAGCTTAGGCACAAGCATTGGCCTCCGGCCTCCACTAATGTTAGGAGAAATGATAGTAGAGCAGAGGACTCTTCTTATTGCTATAGCACTCCTGCATTGTCGACTAGTTCTTATAATAGGTATGGTGTTCGGAATCCAAGTACTGTTGGATCTTGGGATGGAACTGCGACTTCAATGAATGATGGGGATGATGAGGTTGAGGACCATTTGGATATTCCGGGTAGCAAAGGATGTGGGATTCCTTGTTATTGGTCCAAAAAGACCCCAAAGCACAGAGGCATGTATGGAAGCTGTTGCTCCCCTTCGCTTTCTGATACTATAAGGAGAAAAGGAAGTGTCCTTTTGTGTGGAAGTCAAAATGTTTACCCTAGACGACGGGGGTCGTCGTCAGGTTCCAATAAGCGGAGAATTGCATCTAGAAGTGCGCAAGGTGTTCTGCCGTTGCTAAACAATAGTGGTGATGGTAGAGGAGGGTCATCCATAGGAACTGGGAGGAGTGATGATGAACTCTCCACAAACTTTGGGGAACTTGATTTGGAAGCTTTGAGTAGATTGGATGGACGGAGATGGTCAAGCTGCCGAAGTCAAGAAGGCTTGGAGATTGTAGCTCTGAGTGGAGTGGGGGAAGAGGAAAGCATTCCAGATAGTGTTAGAAGTTTTAGCCAGAAGTACAAGCCGATGTTCTTTCGTGAATTGATTGGCCAGAATATTGTGGTGCAATCACTTATAAATGCTATTGATAGGTGTAGGATTGCTCCCGTTTATCTTTTCCAGGGACCCTGTGGAACTGGAAAAACGTCAACAGCTAGAATTTTTGCTGCTTCCTTGAATTGCCTAGCTCCTGATGAAACTAAACCCTGTGGCTACTGCAGGGAGTGCACTGATTTTATGTCTGGTAAGAACAAGGATCTATTGGAAGTTGATGGTACCAATAAGAAAGGAATTGATAAAGTCAGGTACCTATTGAAAACTCTATCTGTGGCTCCCCCATCAGCATCATCAAGGTATAAGGTTTTTGTAATTGATGAGTGTCACTTATTGCCTTCTAAGACATGGTTGGCATTTCTTAAATATTTGGAAGAACCACCGCAGCGAGTTGTCTTCATATTCATTACAACTGATTTGGATAATGTTCCTCGTACCATACAATCTCGGTGTCAGAAATATCTCTTCAACAAAATTAAGGATAGTGAGATTGTGGCCAGGTTGAGGAAAATTGCTGTTGAAGAGAACCTAGATGTTGAACCAGATGCATTAGATTTGATTGCTTTGAATGCAGATGGTTCACTTCGAGATGCAGAAACTATGTTGGACCAGTTGAGTTTGCTGGGGAAAAGAATTTCAACATCTCTTGTGAATGAACTTGTGGGAGTTGTTTCCGATGACAAGTTACTAGATCTTTTGGAGTTAGCAATGTCATCGGACACTGCAGAAACAGTGAAAAGGGCCAGAGATTTGATGGACTCCGGGGTTGATCCCATGGTTTTGATGTCTCAGTTGGCCAGCTTAATTATGGACATCATTGCGGGAACCAGCAGTACTAATGATGTCAAACATGACTCCTTATATGGTGCTCGGAACTTGACTGAAGCAGAATTGGAGAGATTAAAACATGCTCTGAAGATTCTTTCAGAGGCTGAAAAACAGCTTAGGGTTTCAAGTGAGCGCTCAACATGGTTTACAGCGACTCTGTTGCAGCTTGGTTCAGTGCCTTCTCCAGACCTTAGTCACTCATGCAGCAGGAGGCATAGCTGCAAGACAACTGAGGATGATTCTTCAAGTGCTTCAACTTCAAGAGAAGCAGCCACTTACAAACAGAAGTTAGATGGTCACTATATACCACAAAAATCAACTCAACACGCTTCTGTACAAAGAGCACCCAATGACAATTCCAACCAGCAGGGAGATTTGTTGTCAAGAAATAATGGTTTCGGTGTGAATACCAAGCCCTCACATGATCAGTTCGTGGATAGTGGTGCCTCAATTCCCTTGTGTGGAAATGTTATGGCTGGAAATATGAGCCTTAGATGTGTAAACTCTGAAAAGTTAAATGATGTATGGGCACAGTGTATTGAGAAGTGTCATTCAAAGACATTGAGGCAGCTACTACATTATCATGGAAAGCTAGTGTCTATATCTGAAGCTGAAGGTGTTCTGGTTGCTTATGTTGCATTTGAAGATGGAAGTATCAAATCTAGAGCAGAGAGGTTTGTGAGCAGTATCACAAATTCAATGGAAATAGTTCTCAGACGCAATGTAGAGGTTAGAATTGTCCACTTGCCAGGTGGGGAGGCTTCTCTAAACGGTCCAAGTCCAGTTCACTTGCTCGAAGGTCTAAAGCAGGCAGGAACTATGGCAGAACTTGTCAGGGAAAGGAAAAGAGTTGGTTCAAATGCCACAGATGGTTATTCCAATTGTTCTCTGTTTCTGGATGGGACCCACAAGTCAACCTCTGATTCATCAGACTTAGTTGCAGATGGCAATGCTCAAACAAGTGATACAAGAGAGAGCGGACAGGAGATCCCGATGCAGAGAATAGAATCCATTATTCGCAACCAAAGGTTAGAGACTGCTTGGCTACAGGTTGTAGAGAAAGGCACCCCTGGTTCTTTGGGTCGTTTGAAACCTGAAAAGAATCAGGTCCTGCCTCAGGATGGCATTTATTACGAAGATCAGATGGAATCGATGAATTCAATGGGATTATCGTCTCAGCAATGGGATGATGGATTAAACCATGAAGTAAAAATTTTGAGTGCTAACAGTGGGAAGTTCATTCAGCAGGACCAAATAGGTAAAAGGGTTGATCATTATTCTATGTCCCCGAGTTTACTACATGAAAAGGGCAAGTCCGACAAAGATCACCTGGGCGATGAATCAGGGTCAGGTAGAGGAGGTTGCAGTGGATTTTTTCATTGTTATAACACTAGACGTCGTAAAAGAGGAAAGGTAAAAGGGACCCCTGTTCAACCACGCAAAGGTAGACGGTTTTCATTGTTTGGTGTGTGTGGCAAGTCAAGGAAGAAAGCAGAGAAGACAAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005663 GO:0005694 GO:0005886 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009653 GO:0009888 GO:0009987 GO:0010026 GO:0010090 GO:0010091 GO:0016020 GO:0016043 GO:0030154 GO:0032502 GO:0032989 GO:0032991 GO:0033554 GO:0034641 GO:0034645 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0046483 GO:0048468 GO:0048856 GO:0048869 GO:0050896 GO:0051716 GO:0071704 GO:0071840 GO:0071944 GO:0090304 GO:0090558 GO:0090626 GO:1901360 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DNA_pol3_delta2 DNA_pol3_gamma3

Protein Analysis

1511

Amino Acids

168.0

Weight (kDa)

7.47

Isoelectric Point (pI)

44.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DNA_pol3_delta2	PF13177	732 - 891	2.8e-33	DNA polymerase III, delta subunit
AAA	PF00004	753 - 888	3.7e-08	ATPase family associated with various cellular activities (AAA)
DNAX_ATPase_lid	PF22608	895 - 936	1.3e-09	DNA polymerase III clamp loader subunit, ATPase lid domain
DNA_pol3_gamma3	PF12169	946 - 1066	9.3e-09	DNA polymerase III subunits gamma and tau domain III
DnaA_N-like_STI	PF23007	1173 - 1254	1.7e-30	STICHEL, DnaA_N-like alpha-beta domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003782)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14460 AT2G02480 AT2G02480
fragaria_vesca	FvH4_5g27450 FvH4_5g27450
malus_domestica	MD08G1249500.v1.1
prunus_persica	Prupe.1G586700_v2.0.a1 Prupe.1G586700_v2.0.a1 Prupe.1G586700_v2.0.a1 Prupe.1G586700_v2.0.a1 Prupe.1G586700_v2.0.a1
pyrus_communis	pycom08g21590
rosa_chinensis	RchiOBHm_Chr2g0146641 RchiOBHm_Chr7g0218871
rosa_laevigata	RLG00000001635 RLG00000002346 RLG00000002355
rosa_multiflora	Rmu_sc0003823.1_g000001 Rmu_sc0006998.1_g000001
rosa_roxburghii	Rroxscaffold_3G00240440
rosa_rugosa	Rorug07G0179300
rosa_samantha	Rh3AG021300 Rh3CG020600 Rh5BG537900 Rh5CG561800 Rh7AG322600 Rh7BG313700 Rh7CG339400 Rh7DG319800 Rh7DG389400
rosa_wichuraiana	Rw5G027500 Rw7G026930 Rw7G027310 Rw7G028430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	1605, 2219, 4410
AasI	GACNNNNNNGTC	1 cut(s)	3934
AatII	GACGTC	1 cut(s)	4423
Acc16I	TGCGCA	1 cut(s)	1917
Acc65I	GGTACC	2 cut(s)	2417, 2448
AccB1I	GGYRCC	4 cut(s)	2417, 2448, 3467, 4088
AccB7I	CCANNNNNTGG	1 cut(s)	1295
AccBSI	CCGCTC	1 cut(s)	4002
AccI	GTMKAC	2 cut(s)	1592, 4471
AccII	CGCG	2 cut(s)	17, 83
AciI	CCGC	7 cut(s)	58, 81, 1117, 1894, 2579, 3017, 4002
AcoI	YGGCCR	3 cut(s)	2191, 2691, 2991
AcsI	RAATTY	8 cut(s)	499, 716, 933, 2301, 2829, 3718, 4180, 4236
AcuI	CTGAAG	7 cut(s)	74, 734, 923, 3099, 3131, 3651, 3657
AcyI	GRCGYC	2 cut(s)	859, 4420
AfeI	AGCGCT	2 cut(s)	173, 3158
AfiI	CCNNNNNNNGG	9 cut(s)	184, 229, 1295, 1893, 2700, 3485, 4141, 4145, 4466
AflII	CTTAAG	2 cut(s)	1154, 1393
AflIII	ACRYGT	1 cut(s)	15
AhdI	GACNNNNNGTC	1 cut(s)	19
AhlI	ACTAGT	1 cut(s)	1595
AjnI	CCWGG	7 cut(s)	261, 862, 2262, 2693, 3772, 4093, 4353
AjuI	GAANNNNNNNTTGG	2 cut(s)	624, 656
Alw21I	GWGCWC	4 cut(s)	1045, 2372, 3067, 3370
Alw26I	GTCTC	6 cut(s)	119, 464, 606, 2988, 4052, 4203
Alw44I	GTGCAC	1 cut(s)	2368
AlwNI	CAGNNNCTG	3 cut(s)	1217, 3128, 4135
Ama87I	CYCGRG	2 cut(s)	116, 4312
Aor51HI	AGCGCT	2 cut(s)	173, 3158
AoxI	GGCC	7 cut(s)	1405, 1511, 1518, 2191, 2691, 2937, 2991
ApaLI	GTGCAC	1 cut(s)	2368
ApeKI	GCWGC	9 cut(s)	944, 2067, 2309, 2581, 3187, 3228, 3243, 3293, 3592
ApoI	RAATTY	8 cut(s)	499, 716, 933, 2301, 2829, 3718, 4180, 4236
ArsI	GACNNNNNNTTYG	4 cut(s)	224, 256, 858, 890
Asp700I	GAANNNNTTC	5 cut(s)	173, 1163, 2127, 3642, 3732
Asp718I	GGTACC	2 cut(s)	2417, 2448
AspLEI	GCGC	4 cut(s)	174, 748, 1918, 3159
AsuC2I	CCSGG	3 cut(s)	1409, 1710, 2959
AsuHPI	GGTGA	3 cut(s)	1337, 1961, 4343
AsuII	TTCGAA	1 cut(s)	336
AvaI	CYCGRG	2 cut(s)	116, 4312
AxyI	CCTNAGG	1 cut(s)	4140
BaeGI	GKGCMC	2 cut(s)	2372, 3556
BalI	TGGCCA	3 cut(s)	2193, 2693, 2993
BamHI	GGATCC	1 cut(s)	121
BanI	GGYRCC	4 cut(s)	2417, 2448, 3467, 4088
BbsI	GAAGAC	2 cut(s)	2584, 4529
Bbv12I	GWGCWC	4 cut(s)	1045, 2372, 3067, 3370
BbvI	GCAGC	9 cut(s)	931, 2054, 2296, 2593, 3199, 3230, 3240, 3305, 3604
BceAI	ACGGC	2 cut(s)	882, 1915
BcgI	CGANNNNNNTGC	4 cut(s)	2892, 2926, 3166, 3200
BciT130I	CCWGG	7 cut(s)	263, 864, 2264, 2695, 3774, 4095, 4355
BclI	TGATCA	2 cut(s)	3448, 4294
BcnI	CCSGG	3 cut(s)	1409, 1710, 2959
BcoDI	GTCTC	6 cut(s)	119, 464, 606, 2988, 4052, 4203
BcuI	ACTAGT	1 cut(s)	1595
BfmI	CTRYAG	5 cut(s)	945, 1573, 2359, 2919, 4070
BfoI	RGCGCY	2 cut(s)	175, 3160
BfrI	CTTAAG	2 cut(s)	1154, 1393
BglII	AGATCT	2 cut(s)	592, 2887
BlpI	GCTNAGC	1 cut(s)	387
BmcAI	AGTACT	2 cut(s)	1633, 3031
BmeRI	GACNNNNNGTC	1 cut(s)	19
BmeT110I	CYCGRG	2 cut(s)	116, 4312
BmrI	ACTGGG	1 cut(s)	1989
BmsI	GCATC	9 cut(s)	67, 535, 657, 667, 1913, 2495, 2731, 2776, 4008
BmuI	ACTGGG	1 cut(s)	1989
BoxI	GACNNNNGTC	2 cut(s)	1870, 3216
BpiI	GAAGAC	2 cut(s)	2584, 4529
BplI	GAGNNNNNCTC	2 cut(s)	1424, 1456
BpmI	CTGGAG	4 cut(s)	128, 149, 1044, 3192
Bpu10I	CCTNAGC	3 cut(s)	778, 1496, 3140
Bpu1102I	GCTNAGC	1 cut(s)	387
Bpu14I	TTCGAA	1 cut(s)	336
BpuEI	CTTGAG	2 cut(s)	123, 782
BpuMI	CCSGG	3 cut(s)	1409, 1710, 2959
Bsa29I	ATCGAT	1 cut(s)	4175
BsaBI	GATNNNNATC	4 cut(s)	249, 290, 468, 839
BsaHI	GRCGYC	2 cut(s)	859, 4420
BsaI	GGTCTC	1 cut(s)	464
BsaJI	CCNNGG	9 cut(s)	183, 262, 447, 898, 2263, 2958, 2970, 4093, 4354
Bsc4I	CCNNNNNNNGG	9 cut(s)	184, 229, 1295, 1893, 2700, 3485, 4141, 4145, 4466
Bse118I	RCCGGY	1 cut(s)	1070
Bse1I	ACTGG	5 cut(s)	1251, 1984, 2284, 2806, 3806
Bse21I	CCTNAGG	1 cut(s)	4140
Bse8I	GATNNNNATC	4 cut(s)	249, 290, 468, 839
BseBI	CCWGG	7 cut(s)	263, 864, 2264, 2695, 3774, 4095, 4355
BseCI	ATCGAT	1 cut(s)	4175
BseDI	CCNNGG	9 cut(s)	183, 262, 447, 898, 2263, 2958, 2970, 4093, 4354
BseJI	GATNNNNATC	4 cut(s)	249, 290, 468, 839
BseLI	CCNNNNNNNGG	9 cut(s)	184, 229, 1295, 1893, 2700, 3485, 4141, 4145, 4466
BseNI	ACTGG	5 cut(s)	1251, 1984, 2284, 2806, 3806
BseRI	GAGGAG	3 cut(s)	1974, 1999, 4395
BseSI	GKGCMC	2 cut(s)	2372, 3556
BseXI	GCAGC	9 cut(s)	931, 2054, 2296, 2593, 3199, 3230, 3240, 3305, 3604
BseYI	CCCAGC	2 cut(s)	1325, 2818
Bsh1236I	CGCG	2 cut(s)	17, 83
BshFI	GGCC	7 cut(s)	1407, 1513, 1520, 2193, 2693, 2939, 2993
BshNI	GGYRCC	4 cut(s)	2417, 2448, 3467, 4088
BshVI	ATCGAT	1 cut(s)	4175
BsiHKAI	GWGCWC	4 cut(s)	1045, 2372, 3067, 3370
BsiHKCI	CYCGRG	2 cut(s)	116, 4312
BsiSI	CCGG	6 cut(s)	72, 1071, 1408, 1517, 1709, 2958
BslFI	GGGAC	4 cut(s)	2280, 3940, 4294, 4459
BslI	CCNNNNNNNGG	9 cut(s)	184, 229, 1295, 1893, 2700, 3485, 4141, 4145, 4466
BsmAI	GTCTC	6 cut(s)	119, 464, 606, 2988, 4052, 4203
BsmBI	CGTCTC	2 cut(s)	119, 4203
BsmFI	GGGAC	4 cut(s)	2280, 3940, 4294, 4459
BsmI	GAATGC	3 cut(s)	709, 2127, 2770
BsnI	GGCC	7 cut(s)	1407, 1513, 1520, 2193, 2693, 2939, 2993
Bso31I	GGTCTC	1 cut(s)	464
BsoBI	CYCGRG	2 cut(s)	116, 4312
Bsp119I	TTCGAA	1 cut(s)	336
Bsp1286I	GDGCHC	5 cut(s)	1045, 2372, 3067, 3370, 3556
Bsp1407I	TGTACA	1 cut(s)	3358
Bsp1720I	GCTNAGC	1 cut(s)	387
Bsp19I	CCATGG	1 cut(s)	2970
BspACI	CCGC	7 cut(s)	58, 81, 1117, 1894, 2579, 3017, 4002
BspANI	GGCC	7 cut(s)	1407, 1513, 1520, 2193, 2693, 2939, 2993
BspDI	ATCGAT	1 cut(s)	4175
BspFNI	CGCG	2 cut(s)	17, 83
BspHI	TCATGA	1 cut(s)	583
BspMAI	CTGCAG	3 cut(s)	949, 2363, 2923
BspT104I	TTCGAA	1 cut(s)	336
BspT107I	GGYRCC	4 cut(s)	2417, 2448, 3467, 4088
BspTI	CTTAAG	2 cut(s)	1154, 1393
BspTNI	GGTCTC	1 cut(s)	464
BsrBI	CCGCTC	1 cut(s)	4002
BsrFI	RCCGGY	1 cut(s)	1070
BsrGI	TGTACA	1 cut(s)	3358
BsrI	ACTGG	5 cut(s)	1251, 1984, 2284, 2806, 3806
BssAI	RCCGGY	1 cut(s)	1070
BssECI	CCNNGG	9 cut(s)	183, 262, 447, 898, 2263, 2958, 2970, 4093, 4354
BssNI	GRCGYC	2 cut(s)	859, 4420
BssT1I	CCWWGG	3 cut(s)	183, 447, 2970
Bst2UI	CCWGG	7 cut(s)	263, 864, 2264, 2695, 3774, 4095, 4355
Bst4CI	ACNGT	8 cut(s)	998, 1349, 1636, 2929, 3558, 3797, 4253, 4476
Bst6I	CTCTTC	4 cut(s)	1567, 2112, 2666, 2712
BstACI	GRCGYC	2 cut(s)	859, 4420
BstAFI	CTTAAG	2 cut(s)	1154, 1393
BstAPI	GCANNNNNTGC	1 cut(s)	2367
BstAUI	TGTACA	1 cut(s)	3358
BstBI	TTCGAA	1 cut(s)	336
BstC8I	GCNNGC	4 cut(s)	65, 1089, 2995, 3834
BstDSI	CCRYGG	2 cut(s)	898, 2970
BstEII	GGTNACC	1 cut(s)	257
BstENI	CCTNNNNNAGG	1 cut(s)	4139
BstFNI	CGCG	2 cut(s)	17, 83
BstH2I	RGCGCY	2 cut(s)	175, 3160
BstHHI	GCGC	4 cut(s)	174, 748, 1918, 3159
BstMAI	GTCTC	6 cut(s)	119, 464, 606, 2988, 4052, 4203
BstMWI	GCNNNNNNNGC	8 cut(s)	64, 89, 201, 1049, 1492, 2367, 2765, 3659
BstNI	CCWGG	7 cut(s)	263, 864, 2264, 2695, 3774, 4095, 4355
BstNSI	RCATGY	2 cut(s)	1774, 3107
BstPAI	GACNNNNGTC	2 cut(s)	1870, 3216
BstPI	GGTNACC	1 cut(s)	257
BstSFI	CTRYAG	5 cut(s)	945, 1573, 2359, 2919, 4070
BstSLI	GKGCMC	2 cut(s)	2372, 3556
BstUI	CGCG	2 cut(s)	17, 83
BstV1I	GCAGC	9 cut(s)	931, 2054, 2296, 2593, 3199, 3230, 3240, 3305, 3604
BstV2I	GAAGAC	2 cut(s)	2584, 4529
BstX2I	RGATCY	8 cut(s)	121, 147, 592, 1453, 1640, 2398, 2887, 4011
BstXI	CCANNNNNNTGG	1 cut(s)	318
BstYI	RGATCY	8 cut(s)	121, 147, 592, 1453, 1640, 2398, 2887, 4011
Bsu15I	ATCGAT	1 cut(s)	4175
Bsu36I	CCTNAGG	1 cut(s)	4140
BsuRI	GGCC	7 cut(s)	1407, 1513, 1520, 2193, 2693, 2939, 2993
BsuTUI	ATCGAT	1 cut(s)	4175
BtgI	CCRYGG	2 cut(s)	898, 2970
BtgZI	GCGATG	2 cut(s)	90, 4374
BtsI	GCAGTG	4 cut(s)	199, 804, 2916, 4396
Cac8I	GCNNGC	4 cut(s)	65, 1089, 2995, 3834
CaiI	CAGNNNCTG	3 cut(s)	1217, 3128, 4135
CciI	TCATGA	1 cut(s)	583
CfoI	GCGC	4 cut(s)	174, 748, 1918, 3159
Cfr10I	RCCGGY	1 cut(s)	1070
ClaI	ATCGAT	1 cut(s)	4175
CseI	GACGC	5 cut(s)	6, 23, 101, 848, 3750
CspCI	CAANNNNNGTGG	4 cut(s)	1705, 1740, 1993, 2028
DraI	TTTAAA	1 cut(s)	510
DrdI	GACNNNNNNGTC	1 cut(s)	3934
DriI	GACNNNNNGTC	1 cut(s)	19
DseDI	GACNNNNNNGTC	1 cut(s)	3934
EaeI	YGGCCR	3 cut(s)	2191, 2691, 2991
Eam1104I	CTCTTC	4 cut(s)	1567, 2112, 2666, 2712
Eam1105I	GACNNNNNGTC	1 cut(s)	19
EarI	CTCTTC	4 cut(s)	1567, 2112, 2666, 2712
EciI	GGCGGA	1 cut(s)	1106
Eco130I	CCWWGG	3 cut(s)	183, 447, 2970
Eco31I	GGTCTC	1 cut(s)	464
Eco32I	GATATC	2 cut(s)	414, 466
Eco47III	AGCGCT	2 cut(s)	173, 3158
Eco57I	CTGAAG	7 cut(s)	74, 734, 923, 3099, 3131, 3651, 3657
Eco81I	CCTNAGG	1 cut(s)	4140
Eco88I	CYCGRG	2 cut(s)	116, 4312
Eco91I	GGTNACC	1 cut(s)	257
EcoNI	CCTNNNNNAGG	1 cut(s)	4139
EcoO109I	RGGNCCY	4 cut(s)	2267, 3927, 4132, 4446
EcoO65I	GGTNACC	1 cut(s)	257
EcoRI	GAATTC	1 cut(s)	4180
EcoRII	CCWGG	7 cut(s)	261, 862, 2262, 2693, 3772, 4093, 4353
EcoRV	GATATC	2 cut(s)	414, 466
EcoT14I	CCWWGG	3 cut(s)	183, 447, 2970
EcoT22I	ATGCAT	1 cut(s)	2746
ErhI	CCWWGG	3 cut(s)	183, 447, 2970
Esp3I	CGTCTC	2 cut(s)	119, 4203
FalI	AAGNNNNNCTT	4 cut(s)	1148, 1180, 1217, 1249
FaqI	GGGAC	4 cut(s)	2280, 3940, 4294, 4459
FauI	CCCGC	1 cut(s)	3010
FauNDI	CATATG	1 cut(s)	1060
FbaI	TGATCA	2 cut(s)	3448, 4294
FblI	GTMKAC	2 cut(s)	1592, 4471
FspI	TGCGCA	1 cut(s)	1917
GlaI	GCGC	4 cut(s)	173, 747, 1917, 3158
GsaI	CCCAGC	2 cut(s)	1329, 2822
GsuI	CTGGAG	4 cut(s)	128, 149, 1044, 3192
HaeII	RGCGCY	2 cut(s)	175, 3160
HaeIII	GGCC	7 cut(s)	1407, 1513, 1520, 2193, 2693, 2939, 2993
HapII	CCGG	6 cut(s)	72, 1071, 1408, 1517, 1709, 2958
HgaI	GACGC	5 cut(s)	6, 23, 101, 848, 3750
HhaI	GCGC	4 cut(s)	174, 748, 1918, 3159
Hin1I	GRCGYC	2 cut(s)	859, 4420
Hin6I	GCGC	4 cut(s)	172, 746, 1916, 3157
HinP1I	GCGC	4 cut(s)	172, 746, 1916, 3157
HincII	GTYRAC	5 cut(s)	913, 1112, 1593, 2292, 3939
HindII	GTYRAC	5 cut(s)	913, 1112, 1593, 2292, 3939
HindIII	AAGCTT	3 cut(s)	917, 1493, 2031
HpaI	GTTAAC	1 cut(s)	913
HpaII	CCGG	6 cut(s)	72, 1071, 1408, 1517, 1709, 2958
HphI	GGTGA	3 cut(s)	1337, 1961, 4343
Hpy99I	CGWCG	6 cut(s)	17, 22, 25, 1869, 1879, 4425
HpyCH4III	ACNGT	8 cut(s)	998, 1349, 1636, 2929, 3558, 3797, 4253, 4476
HpyCH4IV	ACGT	2 cut(s)	2288, 4420
HpyF10VI	GCNNNNNNNGC	8 cut(s)	64, 89, 201, 1049, 1492, 2367, 2765, 3659
HpySE526I	ACGT	2 cut(s)	2288, 4420
Hsp92I	GRCGYC	2 cut(s)	859, 4420
HspAI	GCGC	4 cut(s)	172, 746, 1916, 3157
KflI	GGGWCCC	3 cut(s)	2267, 3927, 4446
KpnI	GGTACC	2 cut(s)	2421, 2452
Ksp22I	TGATCA	2 cut(s)	3448, 4294
KspAI	GTTAAC	1 cut(s)	913
LmnI	GCTCC	5 cut(s)	109, 1793, 2251, 2335, 2479
Lsp1109I	GCAGC	9 cut(s)	931, 2054, 2296, 2593, 3199, 3230, 3240, 3305, 3604
LweI	GCATC	9 cut(s)	67, 535, 657, 667, 1913, 2495, 2731, 2776, 4008
MaeII	ACGT	2 cut(s)	2288, 4420
MaeIII	GTNAC	6 cut(s)	257, 378, 2522, 2880, 3218, 3320
MbiI	CCGCTC	1 cut(s)	4002
MfeI	CAATTG	1 cut(s)	3904
MflI	RGATCY	8 cut(s)	121, 147, 592, 1453, 1640, 2398, 2887, 4011
MhlI	GDGCHC	5 cut(s)	1045, 2372, 3067, 3370, 3556
MlsI	TGGCCA	3 cut(s)	2193, 2693, 2993
MluI	ACGCGT	1 cut(s)	15
MluNI	TGGCCA	3 cut(s)	2193, 2693, 2993
MlyI	GAGTC	5 cut(s)	353, 1553, 2948, 3044, 3172
MmeI	TCCRAC	6 cut(s)	183, 389, 1618, 2781, 3408, 4365
Mox20I	TGGCCA	3 cut(s)	2193, 2693, 2993
Mph1103I	ATGCAT	1 cut(s)	2746
MroXI	GAANNNNTTC	5 cut(s)	173, 1163, 2127, 3642, 3732
MscI	TGGCCA	3 cut(s)	2193, 2693, 2993
MslI	CAYNNNNRTG	1 cut(s)	3606
Msp20I	TGGCCA	3 cut(s)	2193, 2693, 2993
MspA1I	CMGCKG	2 cut(s)	1107, 1295
MspCI	CTTAAG	2 cut(s)	1154, 1393
MspI	CCGG	6 cut(s)	72, 1071, 1408, 1517, 1709, 2958
MunI	CAATTG	1 cut(s)	3904
Mva1269I	GAATGC	3 cut(s)	709, 2127, 2770
MvaI	CCWGG	7 cut(s)	263, 864, 2264, 2695, 3774, 4095, 4355
MvnI	CGCG	2 cut(s)	17, 83
MwoI	GCNNNNNNNGC	8 cut(s)	64, 89, 201, 1049, 1492, 2367, 2765, 3659
NciI	CCSGG	3 cut(s)	1409, 1710, 2959
NcoI	CCATGG	1 cut(s)	2970
NdeI	CATATG	1 cut(s)	1060
NmuCI	GTSAC	4 cut(s)	378, 2522, 3218, 3320
NsbI	TGCGCA	1 cut(s)	1917
NsiI	ATGCAT	1 cut(s)	2746
NspI	RCATGY	2 cut(s)	1774, 3107
NspV	TTCGAA	1 cut(s)	336
PaeR7I	CTCGAG	1 cut(s)	116
PagI	TCATGA	1 cut(s)	583
PcsI	WCGNNNNNNNCGW	1 cut(s)	26
PctI	GAATGC	3 cut(s)	709, 2127, 2770
PdmI	GAANNNNTTC	5 cut(s)	173, 1163, 2127, 3642, 3732
PflMI	CCANNNNNTGG	1 cut(s)	1295
PfoI	TCCNGGA	1 cut(s)	862
PleI	GAGTC	5 cut(s)	353, 1553, 2948, 3044, 3172
PpsI	GAGTC	5 cut(s)	353, 1553, 2948, 3044, 3172
PpuMI	RGGWCCY	4 cut(s)	2267, 3927, 4132, 4446
PshAI	GACNNNNGTC	2 cut(s)	1870, 3216
PsiI	TTATAA	3 cut(s)	1605, 2219, 4410
Psp5II	RGGWCCY	4 cut(s)	2267, 3927, 4132, 4446
Psp6I	CCWGG	7 cut(s)	261, 862, 2262, 2693, 3772, 4093, 4353
PspEI	GGTNACC	1 cut(s)	257
PspFI	CCCAGC	2 cut(s)	1325, 2818
PspGI	CCWGG	7 cut(s)	261, 862, 2262, 2693, 3772, 4093, 4353
PspPPI	RGGWCCY	4 cut(s)	2267, 3927, 4132, 4446
PsrI	GAACNNNNNNTAC	2 cut(s)	3013, 3045
PstI	CTGCAG	3 cut(s)	949, 2363, 2923
PstNI	CAGNNNCTG	3 cut(s)	1217, 3128, 4135
PsuI	RGATCY	8 cut(s)	121, 147, 592, 1453, 1640, 2398, 2887, 4011
PvuII	CAGCTG	2 cut(s)	1107, 1295
RseI	CAYNNNNRTG	1 cut(s)	3606
SalI	GTCGAC	1 cut(s)	1591
ScaI	AGTACT	2 cut(s)	1633, 3031
SchI	GAGTC	5 cut(s)	353, 1553, 2948, 3044, 3172
SduI	GDGCHC	5 cut(s)	1045, 2372, 3067, 3370, 3556
SfaNI	GCATC	9 cut(s)	67, 535, 657, 667, 1913, 2495, 2731, 2776, 4008
SfcI	CTRYAG	5 cut(s)	945, 1573, 2359, 2919, 4070
Sfr274I	CTCGAG	1 cut(s)	116
SfuI	TTCGAA	1 cut(s)	336
SlaI	CTCGAG	1 cut(s)	116
SmiI	ATTTAAAT	1 cut(s)	510
SmiMI	CAYNNNNRTG	1 cut(s)	3606
SmlI	CTYRAG	5 cut(s)	116, 138, 761, 1154, 1393
SmoI	CTYRAG	5 cut(s)	116, 138, 761, 1154, 1393
SpeI	ACTAGT	1 cut(s)	1595
SsiI	CCGC	7 cut(s)	58, 81, 1117, 1894, 2579, 3017, 4002
SspI	AATATT	2 cut(s)	2200, 2564
StyI	CCWWGG	3 cut(s)	183, 447, 2970
SwaI	ATTTAAAT	1 cut(s)	510
TaaI	ACNGT	8 cut(s)	998, 1349, 1636, 2929, 3558, 3797, 4253, 4476
TaiI	ACGT	2 cut(s)	2291, 4423
TatI	WGTACW	4 cut(s)	1631, 2160, 3029, 3358
TauI	GCSGC	1 cut(s)	83
TseFI	GTSAC	4 cut(s)	378, 2522, 3218, 3320
TseI	GCWGC	9 cut(s)	944, 2067, 2309, 2581, 3187, 3228, 3243, 3293, 3592
Tsp45I	GTSAC	4 cut(s)	378, 2522, 3218, 3320
TspGWI	ACGGA	2 cut(s)	197, 2068
Van91I	CCANNNNNTGG	1 cut(s)	1295
Vha464I	CTTAAG	2 cut(s)	1154, 1393
VneI	GTGCAC	1 cut(s)	2368
XagI	CCTNNNNNAGG	1 cut(s)	4139
XapI	RAATTY	8 cut(s)	499, 716, 933, 2301, 2829, 3718, 4180, 4236
XbaI	TCTAGA	2 cut(s)	1907, 3686
XceI	RCATGY	2 cut(s)	1774, 3107
XcmI	CCANNNNNNNNNTGG	4 cut(s)	2270, 2947, 3001, 3773
XhoI	CTCGAG	1 cut(s)	116
XmiI	GTMKAC	2 cut(s)	1592, 4471
XmnI	GAANNNNTTC	5 cut(s)	173, 1163, 2127, 3642, 3732
ZraI	GACGTC	1 cut(s)	4421
ZrmI	AGTACT	2 cut(s)	1633, 3031
Zsp2I	ATGCAT	1 cut(s)	2746

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.