Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0003782

Physical Location & Seq

Genomic Coordinates Reverse (-)

40721192 .. 40722715

Gene Structure 1524 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G027500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGTTGGACCAGTTGAGTTTGCTGGGGAAAAGAATTTCAACATCTCTTGTGAATGAACTTGTGGGAGTTGTTTCCGATGACAAGTTACTAGATCTTTTGGAGTTAGCAATGTCATCAGACACTACAGAAACAGTGAAGAGGGCCAAAGATTTGATGGACTCTGGGGTTGATCCCATGGTTTTGATGTCTCAGTTGGCCAGCTTAATTATGGACATCATTGCGGGAACCAACGGTACTAATGATGTCAAACATGACTCCTTATATGGTGCTCGGAACTTGACCGAAGGAGAATTGGAGAGATTAAAACATGCTCTGAAGATTCTTTCGGAGGCTGAAAAGCAGCTTAGGGTTTCAAGTGAGCGCTCAACATGGTTTACAGCTACTCTGTTGCAGCTTGGTTTAGTGCCTTATCCAGACCTTAGCACTCATGCAGCAGGAGGCATAGCTGCAAGACAACTGAGGATGACTCTTCAAGTGCTTCAACTTCAAGAGAAGCAGCCACTTACAAACAGAAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005663 GO:0005694 GO:0005886 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009653 GO:0009888 GO:0009987 GO:0010026 GO:0010090 GO:0010091 GO:0016020 GO:0016043 GO:0030154 GO:0032502 GO:0032989 GO:0032991 GO:0033554 GO:0034641 GO:0034645 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0046483 GO:0048468 GO:0048856 GO:0048869 GO:0050896 GO:0051716 GO:0071704 GO:0071840 GO:0071944 GO:0090304 GO:0090558 GO:0090626 GO:1901360 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DNA_pol3_delta2 DNA_pol3_gamma3

Protein Analysis

172

Amino Acids

18.87

Weight (kDa)

5.37

Isoelectric Point (pI)

40.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DNA_pol3_gamma3	PF12169	13 - 130	5.3e-09	DNA polymerase III subunits gamma and tau domain III

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003782)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14460 AT2G02480 AT2G02480
fragaria_vesca	FvH4_5g27450 FvH4_5g27450
malus_domestica	MD08G1249500.v1.1
prunus_persica	Prupe.1G586700_v2.0.a1 Prupe.1G586700_v2.0.a1 Prupe.1G586700_v2.0.a1 Prupe.1G586700_v2.0.a1 Prupe.1G586700_v2.0.a1
pyrus_communis	pycom08g21590
rosa_chinensis	RchiOBHm_Chr2g0146641 RchiOBHm_Chr7g0218871
rosa_laevigata	RLG00000001635 RLG00000002346 RLG00000002355
rosa_multiflora	Rmu_sc0003823.1_g000001 Rmu_sc0006998.1_g000001
rosa_roxburghii	Rroxscaffold_3G00240440
rosa_rugosa	Rorug07G0179300
rosa_samantha	Rh3AG021300 Rh3CG020600 Rh5BG537900 Rh5CG561800 Rh7AG322600 Rh7BG313700 Rh7CG339400 Rh7DG319800 Rh7DG389400
rosa_wichuraiana	Rw5G027500 Rw7G026930 Rw7G027310 Rw7G028430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	221
AclWI	GGATC	1 cut(s)	164
AcoI	YGGCCR	1 cut(s)	195
AcsI	RAATTY	1 cut(s)	33
AcuI	CTGAAG	1 cut(s)	335
AfaI	GTAC	1 cut(s)	235
AfeI	AGCGCT	1 cut(s)	362
AgsI	TTSAA	5 cut(s)	39, 354, 473, 482, 488
AluBI	AGCT	5 cut(s)	201, 343, 380, 394, 446
AluI	AGCT	5 cut(s)	201, 343, 380, 394, 446
Alw21I	GWGCWC	1 cut(s)	271
Alw26I	GTCTC	1 cut(s)	192
AlwI	GGATC	1 cut(s)	164
Aor51HI	AGCGCT	1 cut(s)	362
AoxI	GGCC	2 cut(s)	141, 195
ApeKI	GCWGC	5 cut(s)	340, 391, 431, 446, 496
ApoI	RAATTY	1 cut(s)	33
AspLEI	GCGC	1 cut(s)	363
AspS9I	GGNCC	2 cut(s)	7, 141
AvaII	GGWCC	1 cut(s)	7
BalI	TGGCCA	1 cut(s)	197
Bbv12I	GWGCWC	1 cut(s)	271
BbvI	GCAGC	5 cut(s)	352, 403, 433, 443, 508
BccI	CCATC	1 cut(s)	148
BcoDI	GTCTC	1 cut(s)	192
BfaI	CTAG	1 cut(s)	89
BfmI	CTRYAG	1 cut(s)	123
BfoI	RGCGCY	1 cut(s)	364
BglII	AGATCT	1 cut(s)	91
BisI	GCNGC	5 cut(s)	341, 392, 432, 447, 497
BlsI	GCNGC	5 cut(s)	342, 393, 433, 448, 498
Bme18I	GGWCC	1 cut(s)	7
BmgT120I	GGNCC	2 cut(s)	7, 141
BmiI	GGNNCC	1 cut(s)	226
BplI	GAGNNNNNCTC	2 cut(s)	451, 483
Bpu10I	CCTNAGC	2 cut(s)	344, 419
BsaJI	CCNNGG	1 cut(s)	174
Bse1I	ACTGG	1 cut(s)	10
Bse3DI	GCAATG	2 cut(s)	114, 216
BseDI	CCNNGG	1 cut(s)	174
BseGI	GGATG	1 cut(s)	468
BseMI	GCAATG	2 cut(s)	114, 216
BseMII	CTCAG	2 cut(s)	203, 449
BseNI	ACTGG	1 cut(s)	10
BseXI	GCAGC	5 cut(s)	352, 403, 433, 443, 508
BseYI	CCCAGC	1 cut(s)	22
BshFI	GGCC	2 cut(s)	143, 197
BsiHKAI	GWGCWC	1 cut(s)	271
BsmAI	GTCTC	1 cut(s)	192
BsnI	GGCC	2 cut(s)	143, 197
Bsp1286I	GDGCHC	1 cut(s)	271
Bsp143I	GATC	2 cut(s)	91, 169
Bsp19I	CCATGG	1 cut(s)	174
BspACI	CCGC	1 cut(s)	221
BspANI	GGCC	2 cut(s)	143, 197
BspCNI	CTCAG	2 cut(s)	202, 450
BspLI	GGNNCC	1 cut(s)	226
BspPI	GGATC	1 cut(s)	164
BsrDI	GCAATG	2 cut(s)	114, 216
BsrI	ACTGG	1 cut(s)	10
BssECI	CCNNGG	1 cut(s)	174
BssMI	GATC	2 cut(s)	91, 169
BssT1I	CCWWGG	1 cut(s)	174
Bst4CI	ACNGT	2 cut(s)	133, 233
Bst6I	CTCTTC	2 cut(s)	131, 474
BstC8I	GCNNGC	1 cut(s)	199
BstDEI	CTNAG	4 cut(s)	189, 344, 419, 458
BstDSI	CCRYGG	1 cut(s)	174
BstF5I	GGATG	1 cut(s)	468
BstH2I	RGCGCY	1 cut(s)	364
BstHHI	GCGC	1 cut(s)	363
BstKTI	GATC	2 cut(s)	94, 172
BstMAI	GTCTC	1 cut(s)	192
BstMBI	GATC	2 cut(s)	91, 169
BstNSI	RCATGY	1 cut(s)	311
BstSFI	CTRYAG	1 cut(s)	123
BstV1I	GCAGC	5 cut(s)	352, 403, 433, 443, 508
BstX2I	RGATCY	1 cut(s)	91
BstYI	RGATCY	1 cut(s)	91
BsuRI	GGCC	2 cut(s)	143, 197
BtgI	CCRYGG	1 cut(s)	174
BtsCI	GGATG	1 cut(s)	468
BtsIMutI	CAGTG	1 cut(s)	138
Cac8I	GCNNGC	1 cut(s)	199
CfoI	GCGC	1 cut(s)	363
Cfr13I	GGNCC	2 cut(s)	7, 141
Csp6I	GTAC	1 cut(s)	234
CviAII	CATG	5 cut(s)	175, 251, 308, 369, 428
CviJI	RGCY	9 cut(s)	143, 197, 201, 332, 343, 380, 394, 446, 499
CviKI_1	RGCY	9 cut(s)	143, 197, 201, 332, 343, 380, 394, 446, 499
CviQI	GTAC	1 cut(s)	234
DdeI	CTNAG	4 cut(s)	189, 344, 419, 458
DpnI	GATC	2 cut(s)	93, 171
DpnII	GATC	2 cut(s)	91, 169
EaeI	YGGCCR	1 cut(s)	195
Eam1104I	CTCTTC	2 cut(s)	131, 474
EarI	CTCTTC	2 cut(s)	131, 474
Eco130I	CCWWGG	1 cut(s)	174
Eco47I	GGWCC	1 cut(s)	7
Eco47III	AGCGCT	1 cut(s)	362
Eco57I	CTGAAG	1 cut(s)	335
EcoT14I	CCWWGG	1 cut(s)	174
ErhI	CCWWGG	1 cut(s)	174
FaeI	CATG	5 cut(s)	178, 254, 311, 372, 431
FaiI	YATR	9 cut(s)	176, 209, 252, 262, 264, 309, 370, 429, 443
FatI	CATG	5 cut(s)	174, 250, 307, 368, 427
FauI	CCCGC	1 cut(s)	214
Fnu4HI	GCNGC	5 cut(s)	341, 392, 432, 447, 497
FokI	GGATG	1 cut(s)	475
Fsp4HI	GCNGC	5 cut(s)	341, 392, 432, 447, 497
FspBI	CTAG	1 cut(s)	89
GlaI	GCGC	1 cut(s)	362
GluI	GCNGC	5 cut(s)	341, 392, 432, 447, 497
GsaI	CCCAGC	1 cut(s)	26
HaeII	RGCGCY	1 cut(s)	364
HaeIII	GGCC	2 cut(s)	143, 197
HhaI	GCGC	1 cut(s)	363
Hin1II	CATG	5 cut(s)	178, 254, 311, 372, 431
Hin6I	GCGC	1 cut(s)	361
HinP1I	GCGC	1 cut(s)	361
HinfI	GANTC	4 cut(s)	158, 254, 319, 466
Hpy166II	GTNNAC	1 cut(s)	375
Hpy188I	TCNGA	5 cut(s)	76, 118, 273, 315, 328
Hpy188III	TCNNGA	2 cut(s)	413, 488
Hpy8I	GTNNAC	1 cut(s)	375
HpyAV	CCTTC	1 cut(s)	278
HpyCH4III	ACNGT	2 cut(s)	133, 233
HpyCH4V	TGCA	3 cut(s)	391, 431, 449
HpyF3I	CTNAG	4 cut(s)	189, 344, 419, 458
Hsp92II	CATG	5 cut(s)	178, 254, 311, 372, 431
HspAI	GCGC	1 cut(s)	361
Kzo9I	GATC	2 cut(s)	91, 169
LpnPI	CCDG	6 cut(s)	8, 23, 147, 211, 420, 426
Lsp1109I	GCAGC	5 cut(s)	352, 403, 433, 443, 508
MaeI	CTAG	1 cut(s)	89
MaeIII	GTNAC	1 cut(s)	84
MalI	GATC	2 cut(s)	93, 171
MboI	GATC	2 cut(s)	91, 169
MboII	GAAGA	3 cut(s)	148, 328, 461
MflI	RGATCY	1 cut(s)	91
MhlI	GDGCHC	1 cut(s)	271
MlsI	TGGCCA	1 cut(s)	197
MluCI	AATT	3 cut(s)	33, 204, 290
MluNI	TGGCCA	1 cut(s)	197
MlyI	GAGTC	3 cut(s)	152, 248, 460
MnlI	CCTC	4 cut(s)	132, 322, 431, 453
Mox20I	TGGCCA	1 cut(s)	197
MscI	TGGCCA	1 cut(s)	197
MseI	TTAA	2 cut(s)	203, 302
Msp20I	TGGCCA	1 cut(s)	197
NcoI	CCATGG	1 cut(s)	174
NdeII	GATC	2 cut(s)	91, 169
NlaIII	CATG	5 cut(s)	178, 254, 311, 372, 431
NlaIV	GGNNCC	1 cut(s)	226
NspI	RCATGY	1 cut(s)	311
PfeI	GAWTC	1 cut(s)	319
PkrI	GCNGC	5 cut(s)	342, 393, 433, 448, 498
PleI	GAGTC	3 cut(s)	152, 248, 460
PpsI	GAGTC	3 cut(s)	152, 248, 460
PspFI	CCCAGC	1 cut(s)	22
PspN4I	GGNNCC	1 cut(s)	226
PspPI	GGNCC	2 cut(s)	7, 141
PsrI	GAACNNNNNNTAC	2 cut(s)	217, 249
PsuI	RGATCY	1 cut(s)	91
RsaI	GTAC	1 cut(s)	235
RsaNI	GTAC	1 cut(s)	234
SaqAI	TTAA	2 cut(s)	203, 302
SatI	GCNGC	5 cut(s)	341, 392, 432, 447, 497
Sau3AI	GATC	2 cut(s)	91, 169
Sau96I	GGNCC	2 cut(s)	7, 141
SchI	GAGTC	3 cut(s)	152, 248, 460
SduI	GDGCHC	1 cut(s)	271
SetI	ASST	6 cut(s)	203, 345, 382, 396, 420, 448
SfcI	CTRYAG	1 cut(s)	123
SinI	GGWCC	1 cut(s)	7
Sse9I	AATT	3 cut(s)	33, 204, 290
SsiI	CCGC	1 cut(s)	221
SspMI	CTAG	1 cut(s)	89
StyI	CCWWGG	1 cut(s)	174
TaaI	ACNGT	2 cut(s)	133, 233
TaqII	GACCGA	1 cut(s)	296
TasI	AATT	3 cut(s)	33, 204, 290
TfiI	GAWTC	1 cut(s)	319
Tru1I	TTAA	2 cut(s)	203, 302
Tru9I	TTAA	2 cut(s)	203, 302
TscAI	CASTG	1 cut(s)	138
TseI	GCWGC	5 cut(s)	340, 391, 431, 446, 496
TspDTI	ATGAA	1 cut(s)	69
TspRI	CASTG	1 cut(s)	138
VpaK11BI	GGWCC	1 cut(s)	7
XapI	RAATTY	1 cut(s)	33
XceI	RCATGY	1 cut(s)	311
XcmI	CCANNNNNNNNNTGG	2 cut(s)	151, 205
XspI	CTAG	1 cut(s)	89

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.