Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0003782

Physical Location & Seq

Genomic Coordinates Reverse (-)

53230678 .. 53257224

Gene Structure 26547 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG389400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

ATGGGCTGGTATGTGACTGCGGGAGCAGCTTGGTTCAATGGTGCTTTTAGCAAGGTGGCAAAGGCAGGGCAGGCTGCAGTGACCAGAGGAGAATTGGAGAGATTAAAACATGCTCTGAAGATTCTTTCGGAGGCTGAAAAGCAGCTTAGGGTTTCAAGTGAGCGCTCAAAATGGTTTACAGCTACTCTGTTGCAGCTTGGTTCAGTGCCTTCTCCAGACCTTAGTCACTCATGCAGCAGGAGGCATAGCTGCAAGACAACTGAGGATGACTCTTCAAGTGCTTCAACTTCAAGAGAAGCAGCCACTTACAAACAGAAGTTAGATGGTCACTATATACTACAAAAATCAACTCAACATGCTTCTGTACAAAGAGCACCAAATGACAATTCCAACCATCAAGGAGATTCGTTGTCAAGAAATAATGGTTTCGATGTGAATACCAAGCCCTCACATGATCAGTTTGTGGATAATGGGGCCTCGACTCCCTTGTGTGGAAATGTTATGGCTGGAAATATGAGCCTTAGATGTGTAAACTCTGAAAAGTTAAATGATTTATGGGCACAGTGTATTGAGAAGTGTCATTCAAAGACATTGAGGCAGCTACTACATTCTCATGGAAAGCTAGTGTCTATATCTGAAGCTGAAGGTTGCAGCTCAATAAGCAGATTCAGCCACTTGAGAGTTATCTCTGTTCCAACTCATTGGATGAGGAAAGACGGAAGTCAAATTTTTCTGCATCCACAACAACTCCCAGGCATTTCCAACATGAAACACCTCAAGCAGCTGCAATCAGTTGTGAGACAAACGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005663 GO:0005694 GO:0005886 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009653 GO:0009888 GO:0009987 GO:0010026 GO:0010090 GO:0010091 GO:0016020 GO:0016043 GO:0030154 GO:0032502 GO:0032989 GO:0032991 GO:0033554 GO:0034641 GO:0034645 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0046483 GO:0048468 GO:0048856 GO:0048869 GO:0050896 GO:0051716 GO:0071704 GO:0071840 GO:0071944 GO:0090304 GO:0090558 GO:0090626 GO:1901360 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DNA_pol3_delta2 DNA_pol3_gamma3

Protein Analysis

269

Amino Acids

29.73

Weight (kDa)

9.47

Isoelectric Point (pI)

48.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DnaA_N-like_STI	PF23007	175 - 217	6e-14	STICHEL, DnaA_N-like alpha-beta domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003782)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14460 AT2G02480 AT2G02480
fragaria_vesca	FvH4_5g27450 FvH4_5g27450
malus_domestica	MD08G1249500.v1.1
prunus_persica	Prupe.1G586700_v2.0.a1 Prupe.1G586700_v2.0.a1 Prupe.1G586700_v2.0.a1 Prupe.1G586700_v2.0.a1 Prupe.1G586700_v2.0.a1
pyrus_communis	pycom08g21590
rosa_chinensis	RchiOBHm_Chr2g0146641 RchiOBHm_Chr7g0218871
rosa_laevigata	RLG00000001635 RLG00000002346 RLG00000002355
rosa_multiflora	Rmu_sc0003823.1_g000001 Rmu_sc0006998.1_g000001
rosa_roxburghii	Rroxscaffold_3G00240440
rosa_rugosa	Rorug07G0179300
rosa_samantha	Rh3AG021300 Rh3CG020600 Rh5BG537900 Rh5CG561800 Rh7AG322600 Rh7BG313700 Rh7CG339400 Rh7DG319800 Rh7DG389400
rosa_wichuraiana	Rw5G027500 Rw7G026930 Rw7G027310 Rw7G028430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	20
AcsI	RAATTY	1 cut(s)	726
AcuI	CTGAAG	3 cut(s)	137, 657, 663
AfaI	GTAC	1 cut(s)	366
AfeI	AGCGCT	1 cut(s)	164
AfiI	CCNNNNNNNGG	1 cut(s)	491
AgsI	TTSAA	6 cut(s)	37, 156, 276, 285, 291, 585
AjnI	CCWGG	1 cut(s)	751
AjuI	GAANNNNNNNTTGG	2 cut(s)	370, 402
Alw21I	GWGCWC	1 cut(s)	376
Alw26I	GTCTC	1 cut(s)	793
Aor51HI	AGCGCT	1 cut(s)	164
AoxI	GGCC	1 cut(s)	474
ApoI	RAATTY	1 cut(s)	726
AspLEI	GCGC	1 cut(s)	165
AspS9I	GGNCC	1 cut(s)	474
BaeGI	GKGCMC	1 cut(s)	562
Bbv12I	GWGCWC	1 cut(s)	376
BccI	CCATC	2 cut(s)	317, 402
BciT130I	CCWGG	1 cut(s)	753
BclI	TGATCA	1 cut(s)	454
BcoDI	GTCTC	1 cut(s)	793
BfaI	CTAG	1 cut(s)	623
BfmI	CTRYAG	1 cut(s)	75
BfoI	RGCGCY	1 cut(s)	166
Bme1390I	CCNGG	1 cut(s)	753
BmgT120I	GGNCC	1 cut(s)	474
BmiI	GGNNCC	1 cut(s)	475
BmrFI	CCNGG	1 cut(s)	753
BmsI	GCATC	1 cut(s)	745
BoxI	GACNNNNGTC	2 cut(s)	222, 720
BplI	GAGNNNNNCTC	2 cut(s)	254, 286
BpmI	CTGGAG	1 cut(s)	198
Bpu10I	CCTNAGC	1 cut(s)	146
BpuEI	CTTGAG	2 cut(s)	697, 761
BsaJI	CCNNGG	1 cut(s)	751
BsaXI	ACNNNNNCTCC	2 cut(s)	732, 762
Bsc4I	CCNNNNNNNGG	1 cut(s)	491
BseBI	CCWGG	1 cut(s)	753
BseDI	CCNNGG	1 cut(s)	751
BseGI	GGATG	3 cut(s)	271, 711, 736
BseLI	CCNNNNNNNGG	1 cut(s)	491
BseMII	CTCAG	1 cut(s)	252
BseRI	GAGGAG	1 cut(s)	102
BseSI	GKGCMC	1 cut(s)	562
BshFI	GGCC	1 cut(s)	476
BsiHKAI	GWGCWC	1 cut(s)	376
BslI	CCNNNNNNNGG	1 cut(s)	491
BsmAI	GTCTC	1 cut(s)	793
BsnI	GGCC	1 cut(s)	476
Bsp1286I	GDGCHC	2 cut(s)	376, 562
Bsp1407I	TGTACA	1 cut(s)	364
Bsp143I	GATC	1 cut(s)	454
BspACI	CCGC	1 cut(s)	20
BspANI	GGCC	1 cut(s)	476
BspCNI	CTCAG	1 cut(s)	253
BspLI	GGNNCC	1 cut(s)	475
BspMAI	CTGCAG	1 cut(s)	79
BsrGI	TGTACA	1 cut(s)	364
BssECI	CCNNGG	1 cut(s)	751
BssMI	GATC	1 cut(s)	454
Bst2UI	CCWGG	1 cut(s)	753
Bst4CI	ACNGT	1 cut(s)	564
Bst6I	CTCTTC	1 cut(s)	277
BstAUI	TGTACA	1 cut(s)	364
BstC8I	GCNNGC	1 cut(s)	72
BstDEI	CTNAG	4 cut(s)	146, 221, 261, 521
BstF5I	GGATG	3 cut(s)	271, 711, 736
BstH2I	RGCGCY	1 cut(s)	166
BstHHI	GCGC	1 cut(s)	165
BstKTI	GATC	1 cut(s)	457
BstMAI	GTCTC	1 cut(s)	793
BstMBI	GATC	1 cut(s)	454
BstMWI	GCNNNNNNNGC	4 cut(s)	26, 71, 660, 669
BstNI	CCWGG	1 cut(s)	753
BstNSI	RCATGY	2 cut(s)	113, 359
BstPAI	GACNNNNGTC	2 cut(s)	222, 720
BstSCI	CCNGG	1 cut(s)	751
BstSFI	CTRYAG	1 cut(s)	75
BstSLI	GKGCMC	1 cut(s)	562
BstXI	CCANNNNNNTGG	1 cut(s)	702
BsuRI	GGCC	1 cut(s)	476
BtsCI	GGATG	3 cut(s)	271, 711, 736
BtsI	GCAGTG	1 cut(s)	84
BtsIMutI	CAGTG	3 cut(s)	84, 210, 569
Cac8I	GCNNGC	1 cut(s)	72
CfoI	GCGC	1 cut(s)	165
Cfr13I	GGNCC	1 cut(s)	474
Csp6I	GTAC	1 cut(s)	365
CviAII	CATG	6 cut(s)	110, 231, 356, 452, 614, 766
CviQI	GTAC	1 cut(s)	365
DdeI	CTNAG	4 cut(s)	146, 221, 261, 521
DpnI	GATC	1 cut(s)	456
DpnII	GATC	1 cut(s)	454
Eam1104I	CTCTTC	1 cut(s)	277
EarI	CTCTTC	1 cut(s)	277
Eco47III	AGCGCT	1 cut(s)	164
Eco57I	CTGAAG	3 cut(s)	137, 657, 663
EcoO109I	RGGNCCY	1 cut(s)	474
EcoRII	CCWGG	1 cut(s)	751
FaeI	CATG	6 cut(s)	113, 234, 359, 455, 617, 769
FatI	CATG	6 cut(s)	109, 230, 355, 451, 613, 765
FauI	CCCGC	1 cut(s)	13
FbaI	TGATCA	1 cut(s)	454
FokI	GGATG	3 cut(s)	278, 718, 723
FspBI	CTAG	1 cut(s)	623
GlaI	GCGC	1 cut(s)	164
GsuI	CTGGAG	1 cut(s)	198
HaeII	RGCGCY	1 cut(s)	166
HaeIII	GGCC	1 cut(s)	476
HhaI	GCGC	1 cut(s)	165
Hin1II	CATG	6 cut(s)	113, 234, 359, 455, 617, 769
Hin6I	GCGC	1 cut(s)	163
HinP1I	GCGC	1 cut(s)	163
HinfI	GANTC	5 cut(s)	121, 269, 404, 481, 666
Hpy166II	GTNNAC	2 cut(s)	177, 532
Hpy188I	TCNGA	4 cut(s)	117, 130, 538, 637
Hpy188III	TCNNGA	3 cut(s)	215, 291, 414
Hpy8I	GTNNAC	2 cut(s)	177, 532
HpyAV	CCTTC	2 cut(s)	219, 638
HpyCH4III	ACNGT	1 cut(s)	564
HpyCH4IV	ACGT	1 cut(s)	806
HpyCH4V	TGCA	7 cut(s)	77, 193, 234, 252, 651, 736, 787
HpyF10VI	GCNNNNNNNGC	4 cut(s)	26, 71, 660, 669
HpyF3I	CTNAG	4 cut(s)	146, 221, 261, 521
HpySE526I	ACGT	1 cut(s)	806
Hsp92II	CATG	6 cut(s)	113, 234, 359, 455, 617, 769
HspAI	GCGC	1 cut(s)	163
Ksp22I	TGATCA	1 cut(s)	454
Kzo9I	GATC	1 cut(s)	454
LmnI	GCTCC	1 cut(s)	23
LpnPI	CCDG	8 cut(s)	51, 56, 97, 223, 228, 492, 738, 765
LweI	GCATC	1 cut(s)	745
MaeI	CTAG	1 cut(s)	623
MaeII	ACGT	1 cut(s)	806
MaeIII	GTNAC	4 cut(s)	13, 79, 224, 326
MalI	GATC	1 cut(s)	456
MboI	GATC	1 cut(s)	454
MboII	GAAGA	2 cut(s)	130, 264
MhlI	GDGCHC	2 cut(s)	376, 562
MluCI	AATT	3 cut(s)	92, 385, 726
MlyI	GAGTC	2 cut(s)	263, 475
MmeI	TCCRAC	3 cut(s)	414, 719, 786
MnlI	CCTC	9 cut(s)	80, 124, 234, 256, 457, 487, 588, 702, 785
MseI	TTAA	2 cut(s)	104, 545
MslI	CAYNNNNRTG	1 cut(s)	612
MspA1I	CMGCKG	1 cut(s)	784
MspR9I	CCNGG	1 cut(s)	753
MvaI	CCWGG	1 cut(s)	753
MwoI	GCNNNNNNNGC	4 cut(s)	26, 71, 660, 669
NdeII	GATC	1 cut(s)	454
NlaIII	CATG	6 cut(s)	113, 234, 359, 455, 617, 769
NlaIV	GGNNCC	1 cut(s)	475
NmuCI	GTSAC	4 cut(s)	13, 79, 224, 326
NspI	RCATGY	2 cut(s)	113, 359
PfeI	GAWTC	3 cut(s)	121, 404, 666
PleI	GAGTC	2 cut(s)	263, 475
PpsI	GAGTC	2 cut(s)	263, 475
PshAI	GACNNNNGTC	2 cut(s)	222, 720
Psp6I	CCWGG	1 cut(s)	751
PspGI	CCWGG	1 cut(s)	751
PspN4I	GGNNCC	1 cut(s)	475
PspPI	GGNCC	1 cut(s)	474
PstI	CTGCAG	1 cut(s)	79
PvuII	CAGCTG	1 cut(s)	784
RsaI	GTAC	1 cut(s)	366
RsaNI	GTAC	1 cut(s)	365
RseI	CAYNNNNRTG	1 cut(s)	612
SaqAI	TTAA	2 cut(s)	104, 545
Sau3AI	GATC	1 cut(s)	454
Sau96I	GGNCC	1 cut(s)	474
SchI	GAGTC	2 cut(s)	263, 475
ScrFI	CCNGG	1 cut(s)	753
SduI	GDGCHC	2 cut(s)	376, 562
SfaNI	GCATC	1 cut(s)	745
SfcI	CTRYAG	1 cut(s)	75
SmiMI	CAYNNNNRTG	1 cut(s)	612
SmlI	CTYRAG	2 cut(s)	676, 776
SmoI	CTYRAG	2 cut(s)	676, 776
Sse9I	AATT	3 cut(s)	92, 385, 726
SsiI	CCGC	1 cut(s)	20
SspMI	CTAG	1 cut(s)	623
StyD4I	CCNGG	1 cut(s)	751
TaaI	ACNGT	1 cut(s)	564
TaiI	ACGT	1 cut(s)	809
TaqI	TCGA	2 cut(s)	429, 479
TasI	AATT	3 cut(s)	92, 385, 726
TatI	WGTACW	1 cut(s)	364
TfiI	GAWTC	3 cut(s)	121, 404, 666
Tru1I	TTAA	2 cut(s)	104, 545
Tru9I	TTAA	2 cut(s)	104, 545
TscAI	CASTG	3 cut(s)	84, 210, 569
TseFI	GTSAC	4 cut(s)	13, 79, 224, 326
Tsp45I	GTSAC	4 cut(s)	13, 79, 224, 326
TspDTI	ATGAA	1 cut(s)	782
TspGWI	ACGGA	1 cut(s)	732
TspRI	CASTG	3 cut(s)	84, 210, 569
XapI	RAATTY	1 cut(s)	726
XceI	RCATGY	2 cut(s)	113, 359
XcmI	CCANNNNNNNNNTGG	1 cut(s)	91
XspI	CTAG	1 cut(s)	623

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.