Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0003782

Physical Location & Seq

Genomic Coordinates Forward (+)

34402777 .. 34405757

Gene Structure 2981 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G026930.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2124 bp

ATGGGTGTGTCTGATCCAAGCCAACTCCACTTGAAGAAAGAGCTCACCCAGATTCGAAAGGCCGCCCGCGTTCTCCGCGATCCGGGGACCACTTCTTCTTGGCGCTCTCCTTTGGCTTCCTCTAGATCTGCTGCGGCCCCCGGAGCGGCGGCGGTTCCTTCTGCTTGTTCCGCTTCCCACAATACCAACAATGGCGGCGGCGACAACAAGAAAGTGTTCTTGTACAACTGGAAGGGCTCTTCCAAATCGTCGAGAAATGATGACTACGAAGAGGATGAGGAGGAGGATGATTATGGTGTTGAAGATGAGGACGCTGCTTCTTCTTCTGTTGCGGCATTCAGTGTGGATGACAGCTTGAGCCACGGAGATTCCAGGAGTGACACTGGTGGTGGTCAGAGCCGGTCGTTGATGATGCTCCGGCGCAGATATCCGAATCTTCTACCGCCGCTCAAAGATGGTAATGGTAATGGTAATGGTAAGAAAGCAACAAAAGAGTTGATTCTTGGTAGGAACTTAAGAAAGGGAGGCCGGGATGAGCAATCCGATGACACTGAGGATTACTCTAATTCTGAGGATCTGAGGCACATTAGAGGGGCTTCCCCATTGCTCTTGAAGCTTAGGCACAAGCATTGGCCTCCGGCCTCCACTAATGTTAGGAGAAATGATAGTAGAGTAGAGGACTCTTCTTATTGCTATAGCACTCCTGCATTGTCGACTAGTTCTTATAATAGGTATGGTGTTCGGAATCCAAGTACTGTTGGATCTTGGGATGGAACTGCGACTTCAATGAATGATGGGGATGATGAGGTTGAGGACCATTTGGATATTCCGGGTAGCAAAGGATGTGGGATTCCTTGTTATTGGTCCAAAAAGACCCCGAAGCACAGAGGCATTTCTAATAAGCGGAGAATTGCATCTAGAAGTGCGCAAGGTGTTCTGCCATTGCTAAACAATAGTGGTGATGGTAGAGGAGGGTCATCCATAGGAACTGGGAGGAGTGATGACGAACTCTCCACAAACTTTGGGGAACTTGATTTGGAAGCTTTGAGTAGATTGGATGGACGGAGATGGTCAAGCTGCCGAAGTCAAGAAGGCTTGGAGATTGTAGCTCTGAGTGGAGTGGGGGAAGAGGAAAGCACTCCAGATAGTGTTAGAAGTTTTAGCCAGAAGTACAAGCCGATGTTCTTTCGTGAATTGATTGGCCAGAATATTGTGGTGCAATCACTTATAAATGCTATTGATAGGTGTAGGATTGCTCCCGTTTATCTTTTCCAGGGACCCCGTGGAACTGGAAAAACGTCAACAGCTAGAATTTTTGCTGCTTCCTTGAATTGCCTAGCTCCTGATGAAACTAAACCCTGTGGCTACTGCAGGGAGTGCACTGATTTTATGTCTGGTAAGAACAAGGATCTATTGGAAGTTAATGGTACCAATAAGAAAGGAATTGATAAAGTCAGGTACCTATTGAAAACTCTTTCTGTGGCTCCCTCATCAGCATCATCAAGGTATAAAGTTTTTGTGATTGATGAGTGTCACCTTTGCCCTCTAAGACATGGTTGGCATTTCTTAAATATTTGGAAGAACCACCGCAGCGAGTTGTCTTCATTCATCATTACAACTGATTTGGATAATGTTCCTCAAATCTCTCTCAACAAAATTAAGGATAGTGAGATTGTGGCCAGGTTGAGGAAAATTGCTGTTGAAGAGAATCTAGATGTTGAACCAGATGCATTAGATTTGATTGCTTTGAATGCAGATGGTTCACTTCGAGATGCAGAAACTATGTTGGACCAGTTGAGTTTGCTGGGGAAAAGAATTTCAACATCTCTTGTGAATGAACTTGTGGGAGTTGTTTCCGATGACAAGTTACTAGATCTTTTGGAGTTAGCAATGTCATCGGACACTGCAGAAACAGTGAAAAGGGCCAGAGATTTGATGGACTCTGGGGTTGATCCCATGGTTTTGATGTCTCAGTTGGCCAGCTTAATTATGGACATTGCGGGAACCAACGGTACTAATGATGTCAAACATGACTCCTTATATGGTGCTCGGAACTATGGCAATGTTTCATCTGTTGGCATACTTCTGGTTCCTCAAGTTCTCCTGAAATACTCACCCGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005663 GO:0005694 GO:0005886 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009653 GO:0009888 GO:0009987 GO:0010026 GO:0010090 GO:0010091 GO:0016020 GO:0016043 GO:0030154 GO:0032502 GO:0032989 GO:0032991 GO:0033554 GO:0034641 GO:0034645 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0046483 GO:0048468 GO:0048856 GO:0048869 GO:0050896 GO:0051716 GO:0071704 GO:0071840 GO:0071944 GO:0090304 GO:0090558 GO:0090626 GO:1901360 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DNA_pol3_delta2 DNA_pol3_gamma3

Protein Analysis

707

Amino Acids

77.19

Weight (kDa)

6.08

Isoelectric Point (pI)

49.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DNA_pol3_delta2	PF13177	402 - 511	5.8e-18	DNA polymerase III, delta subunit
DNAX_ATPase_lid	PF22608	557 - 598	5.3e-10	DNA polymerase III clamp loader subunit, ATPase lid domain
DNA_pol3_gamma3	PF12169	607 - 677	4.5e-08	DNA polymerase III subunits gamma and tau domain III

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003782)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14460 AT2G02480 AT2G02480
fragaria_vesca	FvH4_5g27450 FvH4_5g27450
malus_domestica	MD08G1249500.v1.1
prunus_persica	Prupe.1G586700_v2.0.a1 Prupe.1G586700_v2.0.a1 Prupe.1G586700_v2.0.a1 Prupe.1G586700_v2.0.a1 Prupe.1G586700_v2.0.a1
pyrus_communis	pycom08g21590
rosa_chinensis	RchiOBHm_Chr2g0146641 RchiOBHm_Chr7g0218871
rosa_laevigata	RLG00000001635 RLG00000002346 RLG00000002355
rosa_multiflora	Rmu_sc0003823.1_g000001 Rmu_sc0006998.1_g000001
rosa_roxburghii	Rroxscaffold_3G00240440
rosa_rugosa	Rorug07G0179300
rosa_samantha	Rh3AG021300 Rh3CG020600 Rh5BG537900 Rh5CG561800 Rh7AG322600 Rh7BG313700 Rh7CG339400 Rh7DG319800 Rh7DG389400
rosa_wichuraiana	Rw5G027500 Rw7G026930 Rw7G027310 Rw7G028430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	726, 1229
Acc16I	TGCGCA	1 cut(s)	927
Acc65I	GGTACC	2 cut(s)	1427, 1458
AccB1I	GGYRCC	2 cut(s)	1427, 1458
AccBSI	CCGCTC	2 cut(s)	146, 448
AccI	GTMKAC	1 cut(s)	713
AccII	CGCG	2 cut(s)	69, 78
AclWI	GGATC	6 cut(s)	8, 74, 582, 769, 1416, 1946
AcoI	YGGCCR	3 cut(s)	1201, 1677, 1977
AcsI	RAATTY	2 cut(s)	1311, 1815
AfaI	GTAC	6 cut(s)	224, 754, 1172, 1429, 1460, 2014
AfiI	CCNNNNNNNGG	3 cut(s)	82, 145, 1686
AflII	CTTAAG	1 cut(s)	514
AhlI	ACTAGT	1 cut(s)	716
AjnI	CCWGG	3 cut(s)	371, 1272, 1679
AluBI	AGCT	9 cut(s)	43, 354, 616, 1043, 1077, 1109, 1307, 1340, 1983
AluI	AGCT	9 cut(s)	43, 354, 616, 1043, 1077, 1109, 1307, 1340, 1983
Alw21I	GWGCWC	3 cut(s)	45, 1382, 2050
Alw26I	GTCTC	1 cut(s)	1974
Alw44I	GTGCAC	1 cut(s)	1378
AlwI	GGATC	6 cut(s)	8, 74, 582, 769, 1416, 1946
AoxI	GGCC	9 cut(s)	60, 135, 526, 632, 639, 1201, 1677, 1923, 1977
ApaLI	GTGCAC	1 cut(s)	1378
ApeKI	GCWGC	5 cut(s)	131, 314, 1077, 1319, 1590
ApoI	RAATTY	2 cut(s)	1311, 1815
Asp700I	GAANNNNTTC	1 cut(s)	215
Asp718I	GGTACC	2 cut(s)	1427, 1458
AspLEI	GCGC	3 cut(s)	105, 423, 928
AspS9I	GGNCC	7 cut(s)	87, 136, 814, 864, 1277, 1789, 1923
AsuC2I	CCSGG	4 cut(s)	84, 141, 530, 831
AsuHPI	GGTGA	4 cut(s)	37, 971, 1526, 2106
AsuII	TTCGAA	1 cut(s)	55
AvaII	GGWCC	5 cut(s)	87, 814, 864, 1277, 1789
BaeGI	GKGCMC	1 cut(s)	1382
BalI	TGGCCA	3 cut(s)	1203, 1679, 1979
BanI	GGYRCC	2 cut(s)	1427, 1458
BanII	GRGCYC	2 cut(s)	45, 239
BbsI	GAAGAC	1 cut(s)	1593
Bbv12I	GWGCWC	3 cut(s)	45, 1382, 2050
BbvI	GCAGC	5 cut(s)	118, 301, 1064, 1306, 1602
BccI	CCATC	8 cut(s)	449, 764, 788, 956, 1052, 1062, 1751, 1930
BcgI	CGANNNNNNTGC	2 cut(s)	1878, 1912
BciT130I	CCWGG	3 cut(s)	373, 1274, 1681
BcnI	CCSGG	4 cut(s)	84, 141, 530, 831
BcoDI	GTCTC	1 cut(s)	1974
BcuI	ACTAGT	1 cut(s)	716
BfaI	CTAG	8 cut(s)	123, 717, 918, 1308, 1337, 1712, 1871, 2122
BfmI	CTRYAG	3 cut(s)	694, 1369, 1905
BfoI	RGCGCY	1 cut(s)	106
BfrI	CTTAAG	1 cut(s)	514
BglII	AGATCT	2 cut(s)	125, 1873
BmcAI	AGTACT	1 cut(s)	754
Bme1390I	CCNGG	7 cut(s)	84, 141, 373, 530, 831, 1274, 1681
Bme18I	GGWCC	5 cut(s)	87, 814, 864, 1277, 1789
BmgT120I	GGNCC	7 cut(s)	87, 136, 814, 864, 1277, 1789, 1923
BmrFI	CCNGG	7 cut(s)	84, 141, 373, 530, 831, 1274, 1681
BmrI	ACTGGG	1 cut(s)	999
BmsI	GCATC	5 cut(s)	402, 923, 1505, 1717, 1762
BmuI	ACTGGG	1 cut(s)	999
BpiI	GAAGAC	1 cut(s)	1593
BplI	GAGNNNNNCTC	2 cut(s)	545, 577
BpmI	CTGGAG	1 cut(s)	1125
Bpu10I	CCTNAGC	1 cut(s)	617
Bpu14I	TTCGAA	1 cut(s)	55
BpuEI	CTTGAG	2 cut(s)	376, 2079
BpuMI	CCSGG	4 cut(s)	84, 141, 530, 831
BsaJI	CCNNGG	6 cut(s)	83, 139, 361, 1273, 1282, 1956
BsaXI	ACNNNNNCTCC	2 cut(s)	995, 1025
Bsc4I	CCNNNNNNNGG	3 cut(s)	82, 145, 1686
Bse118I	RCCGGY	1 cut(s)	399
Bse1I	ACTGG	5 cut(s)	233, 388, 994, 1294, 1792
Bse3DI	GCAATG	5 cut(s)	602, 941, 1896, 1995, 2068
BseBI	CCWGG	3 cut(s)	373, 1274, 1681
BseDI	CCNNGG	6 cut(s)	83, 139, 361, 1273, 1282, 1956
BseGI	GGATG	9 cut(s)	280, 292, 352, 538, 775, 805, 848, 977, 1063
BseLI	CCNNNNNNNGG	3 cut(s)	82, 145, 1686
BseMI	GCAATG	5 cut(s)	602, 941, 1896, 1995, 2068
BseMII	CTCAG	5 cut(s)	543, 561, 569, 1103, 1985
BseNI	ACTGG	5 cut(s)	233, 388, 994, 1294, 1792
BseRI	GAGGAG	4 cut(s)	293, 296, 984, 1009
BseSI	GKGCMC	1 cut(s)	1382
BseXI	GCAGC	5 cut(s)	118, 301, 1064, 1306, 1602
BseYI	CCCAGC	1 cut(s)	1804
Bsh1236I	CGCG	2 cut(s)	69, 78
Bsh1285I	CGRYCG	1 cut(s)	404
BshFI	GGCC	9 cut(s)	62, 137, 528, 634, 641, 1203, 1679, 1925, 1979
BshNI	GGYRCC	2 cut(s)	1427, 1458
BsiEI	CGRYCG	1 cut(s)	404
BsiHKAI	GWGCWC	3 cut(s)	45, 1382, 2050
BsiSI	CCGG	7 cut(s)	83, 141, 400, 418, 529, 638, 830
BslFI	GGGAC	2 cut(s)	100, 1290
BslI	CCNNNNNNNGG	3 cut(s)	82, 145, 1686
BsmAI	GTCTC	1 cut(s)	1974
BsmFI	GGGAC	2 cut(s)	100, 1290
BsmI	GAATGC	2 cut(s)	335, 1756
BsnI	GGCC	9 cut(s)	62, 137, 528, 634, 641, 1203, 1679, 1925, 1979
Bsp119I	TTCGAA	1 cut(s)	55
Bsp1286I	GDGCHC	4 cut(s)	45, 239, 1382, 2050
Bsp1407I	TGTACA	1 cut(s)	222
Bsp143I	GATC	8 cut(s)	13, 79, 125, 574, 761, 1408, 1873, 1951
Bsp19I	CCATGG	1 cut(s)	1956
BspANI	GGCC	9 cut(s)	62, 137, 528, 634, 641, 1203, 1679, 1925, 1979
BspCNI	CTCAG	5 cut(s)	544, 562, 570, 1104, 1984
BspFNI	CGCG	2 cut(s)	69, 78
BspMAI	CTGCAG	2 cut(s)	1373, 1909
BspPI	GGATC	6 cut(s)	8, 74, 582, 769, 1416, 1946
BspQI	GCTCTTC	1 cut(s)	244
BspT104I	TTCGAA	1 cut(s)	55
BspT107I	GGYRCC	2 cut(s)	1427, 1458
BspTI	CTTAAG	1 cut(s)	514
BsrBI	CCGCTC	2 cut(s)	146, 448
BsrDI	GCAATG	5 cut(s)	602, 941, 1896, 1995, 2068
BsrFI	RCCGGY	1 cut(s)	399
BsrGI	TGTACA	1 cut(s)	222
BsrI	ACTGG	5 cut(s)	233, 388, 994, 1294, 1792
BssAI	RCCGGY	1 cut(s)	399
BssECI	CCNNGG	6 cut(s)	83, 139, 361, 1273, 1282, 1956
BssMI	GATC	8 cut(s)	13, 79, 125, 574, 761, 1408, 1873, 1951
BssT1I	CCWWGG	1 cut(s)	1956
Bst2UI	CCWGG	3 cut(s)	373, 1274, 1681
Bst4CI	ACNGT	3 cut(s)	757, 1915, 2012
Bst6I	CTCTTC	5 cut(s)	244, 264, 688, 1122, 1698
BstAFI	CTTAAG	1 cut(s)	514
BstAPI	GCANNNNNTGC	1 cut(s)	1377
BstAUI	TGTACA	1 cut(s)	222
BstBI	TTCGAA	1 cut(s)	55
BstC8I	GCNNGC	2 cut(s)	67, 1981
BstDEI	CTNAG	7 cut(s)	552, 570, 578, 617, 1112, 1547, 1971
BstDSI	CCRYGG	3 cut(s)	361, 1282, 1956
BstF5I	GGATG	9 cut(s)	280, 292, 352, 538, 775, 805, 848, 977, 1063
BstFNI	CGCG	2 cut(s)	69, 78
BstH2I	RGCGCY	1 cut(s)	106
BstHHI	GCGC	3 cut(s)	105, 423, 928
BstKTI	GATC	8 cut(s)	16, 82, 128, 577, 764, 1411, 1876, 1954
BstMAI	GTCTC	1 cut(s)	1974
BstMBI	GATC	8 cut(s)	13, 79, 125, 574, 761, 1408, 1873, 1951
BstMCI	CGRYCG	1 cut(s)	404
BstMWI	GCNNNNNNNGC	6 cut(s)	75, 143, 170, 613, 1377, 1751
BstNI	CCWGG	3 cut(s)	373, 1274, 1681
BstSCI	CCNGG	7 cut(s)	82, 139, 371, 528, 829, 1272, 1679
BstSFI	CTRYAG	3 cut(s)	694, 1369, 1905
BstSLI	GKGCMC	1 cut(s)	1382
BstUI	CGCG	2 cut(s)	69, 78
BstV1I	GCAGC	5 cut(s)	118, 301, 1064, 1306, 1602
BstV2I	GAAGAC	1 cut(s)	1593
BstX2I	RGATCY	5 cut(s)	125, 574, 761, 1408, 1873
BstYI	RGATCY	5 cut(s)	125, 574, 761, 1408, 1873
BsuRI	GGCC	9 cut(s)	62, 137, 528, 634, 641, 1203, 1679, 1925, 1979
BtgI	CCRYGG	3 cut(s)	361, 1282, 1956
BtsCI	GGATG	9 cut(s)	280, 292, 352, 538, 775, 805, 848, 977, 1063
BtsI	GCAGTG	1 cut(s)	1902
BtsIMutI	CAGTG	6 cut(s)	346, 381, 549, 1380, 1902, 1920
Cac8I	GCNNGC	2 cut(s)	67, 1981
CfoI	GCGC	3 cut(s)	105, 423, 928
Cfr10I	RCCGGY	1 cut(s)	399
Cfr13I	GGNCC	7 cut(s)	87, 136, 814, 864, 1277, 1789, 1923
CseI	GACGC	1 cut(s)	320
Csp6I	GTAC	6 cut(s)	223, 753, 1171, 1428, 1459, 2013
CspCI	CAANNNNNGTGG	4 cut(s)	826, 861, 1003, 1038
CviAII	CATG	3 cut(s)	1553, 1957, 2030
CviQI	GTAC	6 cut(s)	223, 753, 1171, 1428, 1459, 2013
DdeI	CTNAG	7 cut(s)	552, 570, 578, 617, 1112, 1547, 1971
DpnI	GATC	8 cut(s)	15, 81, 127, 576, 763, 1410, 1875, 1953
DpnII	GATC	8 cut(s)	13, 79, 125, 574, 761, 1408, 1873, 1951
EaeI	YGGCCR	3 cut(s)	1201, 1677, 1977
Eam1104I	CTCTTC	5 cut(s)	244, 264, 688, 1122, 1698
EarI	CTCTTC	5 cut(s)	244, 264, 688, 1122, 1698
Ecl136II	GAGCTC	1 cut(s)	43
Eco130I	CCWWGG	1 cut(s)	1956
Eco24I	GRGCYC	2 cut(s)	45, 239
Eco32I	GATATC	1 cut(s)	428
Eco47I	GGWCC	5 cut(s)	87, 814, 864, 1277, 1789
Eco53kI	GAGCTC	1 cut(s)	43
EcoICRI	GAGCTC	1 cut(s)	43
EcoO109I	RGGNCCY	1 cut(s)	1277
EcoRII	CCWGG	3 cut(s)	371, 1272, 1679
EcoRV	GATATC	1 cut(s)	428
EcoT14I	CCWWGG	1 cut(s)	1956
EcoT22I	ATGCAT	1 cut(s)	1732
EcoT38I	GRGCYC	2 cut(s)	45, 239
ErhI	CCWWGG	1 cut(s)	1956
FaeI	CATG	3 cut(s)	1556, 1960, 2033
FaqI	GGGAC	2 cut(s)	100, 1290
FatI	CATG	3 cut(s)	1552, 1956, 2029
FauI	CCCGC	2 cut(s)	74, 1993
FblI	GTMKAC	1 cut(s)	713
FokI	GGATG	9 cut(s)	287, 299, 359, 545, 782, 812, 855, 964, 1070
FriOI	GRGCYC	2 cut(s)	45, 239
FspBI	CTAG	8 cut(s)	123, 717, 918, 1308, 1337, 1712, 1871, 2122
FspI	TGCGCA	1 cut(s)	927
GlaI	GCGC	3 cut(s)	104, 422, 927
GsaI	CCCAGC	1 cut(s)	1808
GsuI	CTGGAG	1 cut(s)	1125
HaeII	RGCGCY	1 cut(s)	106
HaeIII	GGCC	9 cut(s)	62, 137, 528, 634, 641, 1203, 1679, 1925, 1979
HapII	CCGG	7 cut(s)	83, 141, 400, 418, 529, 638, 830
HgaI	GACGC	1 cut(s)	320
HhaI	GCGC	3 cut(s)	105, 423, 928
Hin1II	CATG	3 cut(s)	1556, 1960, 2033
Hin6I	GCGC	3 cut(s)	103, 421, 926
HinP1I	GCGC	3 cut(s)	103, 421, 926
HincII	GTYRAC	2 cut(s)	714, 1302
HindII	GTYRAC	2 cut(s)	714, 1302
HindIII	AAGCTT	2 cut(s)	614, 1041
HpaII	CCGG	7 cut(s)	83, 141, 400, 418, 529, 638, 830
HphI	GGTGA	4 cut(s)	37, 971, 1526, 2106
Hpy166II	GTNNAC	4 cut(s)	714, 1302, 1380, 1763
Hpy8I	GTNNAC	4 cut(s)	714, 1302, 1380, 1763
Hpy99I	CGWCG	1 cut(s)	253
HpyAV	CCTTC	3 cut(s)	168, 226, 1085
HpyCH4III	ACNGT	3 cut(s)	757, 1915, 2012
HpyCH4IV	ACGT	1 cut(s)	1298
HpyCH4V	TGCA	9 cut(s)	707, 914, 1219, 1371, 1380, 1730, 1754, 1775, 1907
HpyF10VI	GCNNNNNNNGC	6 cut(s)	75, 143, 170, 613, 1377, 1751
HpyF3I	CTNAG	7 cut(s)	552, 570, 578, 617, 1112, 1547, 1971
HpySE526I	ACGT	1 cut(s)	1298
Hsp92II	CATG	3 cut(s)	1556, 1960, 2033
HspAI	GCGC	3 cut(s)	103, 421, 926
KflI	GGGWCCC	1 cut(s)	1277
KpnI	GGTACC	2 cut(s)	1431, 1462
Kzo9I	GATC	8 cut(s)	13, 79, 125, 574, 761, 1408, 1873, 1951
LguI	GCTCTTC	1 cut(s)	244
LmnI	GCTCC	5 cut(s)	143, 420, 1261, 1345, 1489
Lsp1109I	GCAGC	5 cut(s)	118, 301, 1064, 1306, 1602
LweI	GCATC	5 cut(s)	402, 923, 1505, 1717, 1762
MaeI	CTAG	8 cut(s)	123, 717, 918, 1308, 1337, 1712, 1871, 2122
MaeII	ACGT	1 cut(s)	1298
MaeIII	GTNAC	3 cut(s)	377, 1532, 1866
MalI	GATC	8 cut(s)	15, 81, 127, 576, 763, 1410, 1875, 1953
MbiI	CCGCTC	2 cut(s)	146, 448
MboI	GATC	8 cut(s)	13, 79, 125, 574, 761, 1408, 1873, 1951
MflI	RGATCY	5 cut(s)	125, 574, 761, 1408, 1873
MhlI	GDGCHC	4 cut(s)	45, 239, 1382, 2050
MlsI	TGGCCA	3 cut(s)	1203, 1679, 1979
MluNI	TGGCCA	3 cut(s)	1203, 1679, 1979
MlyI	GAGTC	3 cut(s)	674, 1934, 2027
MmeI	TCCRAC	2 cut(s)	739, 1767
Mox20I	TGGCCA	3 cut(s)	1203, 1679, 1979
Mph1103I	ATGCAT	1 cut(s)	1732
MroXI	GAANNNNTTC	1 cut(s)	215
MscI	TGGCCA	3 cut(s)	1203, 1679, 1979
MseI	TTAA	5 cut(s)	515, 1422, 1568, 1659, 1985
Msp20I	TGGCCA	3 cut(s)	1203, 1679, 1979
MspCI	CTTAAG	1 cut(s)	514
MspI	CCGG	7 cut(s)	83, 141, 400, 418, 529, 638, 830
MspR9I	CCNGG	7 cut(s)	84, 141, 373, 530, 831, 1274, 1681
Mva1269I	GAATGC	2 cut(s)	335, 1756
MvaI	CCWGG	3 cut(s)	373, 1274, 1681
MvnI	CGCG	2 cut(s)	69, 78
MwoI	GCNNNNNNNGC	6 cut(s)	75, 143, 170, 613, 1377, 1751
NciI	CCSGG	4 cut(s)	84, 141, 530, 831
NcoI	CCATGG	1 cut(s)	1956
NdeII	GATC	8 cut(s)	13, 79, 125, 574, 761, 1408, 1873, 1951
NlaIII	CATG	3 cut(s)	1556, 1960, 2033
NmuCI	GTSAC	2 cut(s)	377, 1532
NsbI	TGCGCA	1 cut(s)	927
NsiI	ATGCAT	1 cut(s)	1732
NspV	TTCGAA	1 cut(s)	55
PciSI	GCTCTTC	1 cut(s)	244
PctI	GAATGC	2 cut(s)	335, 1756
PdmI	GAANNNNTTC	1 cut(s)	215
PfeI	GAWTC	7 cut(s)	52, 368, 433, 499, 745, 850, 1708
PfoI	TCCNGGA	1 cut(s)	371
PleI	GAGTC	3 cut(s)	674, 1934, 2027
PpsI	GAGTC	3 cut(s)	674, 1934, 2027
PpuMI	RGGWCCY	1 cut(s)	1277
PsiI	TTATAA	2 cut(s)	726, 1229
Psp124BI	GAGCTC	1 cut(s)	45
Psp5II	RGGWCCY	1 cut(s)	1277
Psp6I	CCWGG	3 cut(s)	371, 1272, 1679
PspFI	CCCAGC	1 cut(s)	1804
PspGI	CCWGG	3 cut(s)	371, 1272, 1679
PspPI	GGNCC	7 cut(s)	87, 136, 814, 864, 1277, 1789, 1923
PspPPI	RGGWCCY	1 cut(s)	1277
PsrI	GAACNNNNNNTAC	2 cut(s)	1996, 2028
PstI	CTGCAG	2 cut(s)	1373, 1909
PsuI	RGATCY	5 cut(s)	125, 574, 761, 1408, 1873
RsaI	GTAC	6 cut(s)	224, 754, 1172, 1429, 1460, 2014
RsaNI	GTAC	6 cut(s)	223, 753, 1171, 1428, 1459, 2013
SacI	GAGCTC	1 cut(s)	45
SalI	GTCGAC	1 cut(s)	712
SapI	GCTCTTC	1 cut(s)	244
SaqAI	TTAA	5 cut(s)	515, 1422, 1568, 1659, 1985
Sau3AI	GATC	8 cut(s)	13, 79, 125, 574, 761, 1408, 1873, 1951
Sau96I	GGNCC	7 cut(s)	87, 136, 814, 864, 1277, 1789, 1923
ScaI	AGTACT	1 cut(s)	754
SchI	GAGTC	3 cut(s)	674, 1934, 2027
ScrFI	CCNGG	7 cut(s)	84, 141, 373, 530, 831, 1274, 1681
SduI	GDGCHC	4 cut(s)	45, 239, 1382, 2050
SfaNI	GCATC	5 cut(s)	402, 923, 1505, 1717, 1762
SfcI	CTRYAG	3 cut(s)	694, 1369, 1905
SfuI	TTCGAA	1 cut(s)	55
SinI	GGWCC	5 cut(s)	87, 814, 864, 1277, 1789
SmlI	CTYRAG	3 cut(s)	355, 514, 2094
SmoI	CTYRAG	3 cut(s)	355, 514, 2094
SpeI	ACTAGT	1 cut(s)	716
SspI	AATATT	2 cut(s)	1210, 1573
SspMI	CTAG	8 cut(s)	123, 717, 918, 1308, 1337, 1712, 1871, 2122
SstI	GAGCTC	1 cut(s)	45
StyD4I	CCNGG	7 cut(s)	82, 139, 371, 528, 829, 1272, 1679
StyI	CCWWGG	1 cut(s)	1956
TaaI	ACNGT	3 cut(s)	757, 1915, 2012
TaiI	ACGT	1 cut(s)	1301
TaqI	TCGA	4 cut(s)	55, 251, 713, 1768
TatI	WGTACW	3 cut(s)	222, 752, 1170
TauI	GCSGC	8 cut(s)	65, 137, 149, 152, 198, 201, 335, 448
TfiI	GAWTC	7 cut(s)	52, 368, 433, 499, 745, 850, 1708
Tru1I	TTAA	5 cut(s)	515, 1422, 1568, 1659, 1985
Tru9I	TTAA	5 cut(s)	515, 1422, 1568, 1659, 1985
TscAI	CASTG	6 cut(s)	346, 388, 556, 1387, 1909, 1920
TseFI	GTSAC	2 cut(s)	377, 1532
TseI	GCWGC	5 cut(s)	131, 314, 1077, 1319, 1590
Tsp45I	GTSAC	2 cut(s)	377, 1532
TspDTI	ATGAA	6 cut(s)	803, 1362, 1593, 1597, 1851, 2058
TspGWI	ACGGA	2 cut(s)	378, 1078
TspRI	CASTG	6 cut(s)	346, 388, 556, 1387, 1909, 1920
Vha464I	CTTAAG	1 cut(s)	514
VneI	GTGCAC	1 cut(s)	1378
VpaK11BI	GGWCC	5 cut(s)	87, 814, 864, 1277, 1789
XapI	RAATTY	2 cut(s)	1311, 1815
XbaI	TCTAGA	3 cut(s)	122, 917, 1711
XcmI	CCANNNNNNNNNTGG	3 cut(s)	1280, 1933, 1987
XmiI	GTMKAC	1 cut(s)	713
XmnI	GAANNNNTTC	1 cut(s)	215
XspI	CTAG	8 cut(s)	123, 717, 918, 1308, 1337, 1712, 1871, 2122
ZrmI	AGTACT	1 cut(s)	754
Zsp2I	ATGCAT	1 cut(s)	1732

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.