RLG00000002346

DNA polymerase III subunits gamma and tau domain III

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0003782
Physical Location & Seq
Forward (+)
32569335 .. 32576391
7057 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000002346

Sequence Viewer

Length: 3708 bp
ATGGGGGCGTCTGATCCAAGCCAACTCCACTTGAAGAAAGAGCTCACCCAGATTCGAAAGGCCGCCCGCGTTCTCCGCGATCCGGGGACCACTTCTTCTTGGCGCTCTCCTTTGGCTTCCTCTAGATCTGCTGCGGCGCCGGGAGCGGCGCCGGTTCCTTCTACTTGTTCCACTTCCCACAATACCAACAATGGCGGCGGCGACAACAAGAAGGTGTTCCTGTACAACTGGAAGGGCTCTTCCAAATCGTCGAGAAATGATGACTACGAAGAGGATGAGGAGGAGGAGGAGGATGATTATGGTGTTGAAGATGAGGATGAAGCTTCTTCTGTTGCGGCATTGAGTGTGGATGACAGCTTGAGCCACGGAGATTCCAGGAGTGACACTGGTGGTGGTCACAGCCGGTCGTTGATGATGCTCCGGCGCAGATATCCGAATCTTCTACCGCCGCTCAAAGATGTTAATGGTAATGGTAATGGTAATGGTAAGAAAGCAAGTAAGAAAATCGAGTCCCATTCTCATGTTTTGTCCAAACATCAGCAGAAAGAGTTGATTCTTGGTAGGAACTTAAGAAAGGGAGGCCGGGATGAGCAATCCGATGACACTGAGGATTACTCTAATTCTGAGGATCTGAGGCACATTAGAGGGGCTTCCCCATTGCTCTTGAAGCTTAGGCACAAGCATTGGCCTCCGGCCTCCACTAATGTTAGGAGAAATGATAGTAGAGCAGAGGACTCTTCTTATTGCTATAGCACTCCTGCATTGTCGACTAGTTCTTATAATAGGTATGGTGTTCGGAATCCAAGTACTGTTGGATCTTGGGATGGAACTGCGACTTCAATGAATGATGGGGATGATGAGGTTGAGGACCATTTGGATATTCCGGGTAGCAAAGGATGTGGGATTCCTTGTTATTGGTCCAAAAAGACCCCAAAGCACAGAGGCATGTATGGAAGCTGTTGCTCCCCTTCGCTTTCTGATACTATAAGGAGAAAAGGAAGTGTCCTTTTGTGTGGAAGTCAAAATGTTTATCCTAGACGACGGGGGTCGTCGTCAGGTTCCAATAAGCGGAGAATTGCATCTAGAAGTGCGCAAGGTGTTCTGCCGTTGCTAAACAATAGTGGTGATGGTAGAGGAGGGTCATCCATAGGAACTGGGAGGAGTGATGATGAACTCTCCACAAACTTTGGGGAACTTGATTTGGAAGCTTTGAGTAGATTGGATGGACGGAGATGGTCAAGCTGCCGAAGTCAAGAAGGCTTGGAGATTGTAGCTCTGAGTGGAGTGGGGGAAGAGGAAAGCACTCCAGATAGTGTTAGAAGTTTTAGCCAGAAGTACAAGCCGATGTTCTTTCGTGAATTGATTGGCCAGAATATTGTGGTGCAATCACTTATAAATGCTATTGATAGGTGTAGGATTGCTCCCGTTTATCTTTTCCAGGGACCCCGTGGAACTGGAAAAACGTCAACAGCTAGAATTTTTGCTGCTTCCTTGAATTGCCTAGCTCCTGATGAAACTAAACCCTGTGGCTACTGCAGGGAGTGCACTGATTTTATGTCTGGTAAGAACAAGGATCTATTGGAAGTTGATGGTACCAATAAGAAAGGAATTGATAAAGTCAGGTACCTATTGAAAACTCTATCTGTGGCTCCCCCATCAGCATCATCAAGGTATAAGGTTTTTGTAATTGATGAGTGTCACTTATTGCCTTCTAAGACATGGTTGGCATTTCTTAAATATTTGGAAGAACCACCGCAGCGAGTTGTCCTCATATTCATTACAACTGATTTGGATAATGTTCCTCGTACCATACAATCTCGGTGTCAGAAATATCTCTTCAACAAAATTAAGGATAGTGAGATTGTGGCCAGGTTGAGGAAAATTGCTGTTGAAGAGAACCTAGATGTTGAACCAGATGCATTAGATTTGATTGCTTTGAATGCAGATGGTTCACTTCGAGATGCAGAAACTATGTTGGACCAGTTGAGTTTGCTGGGGAAAAGAATTTCAACATCTCTTGTGAATGAACTTGTGGGAGTTGTTTCCGATGACAAGTTACTAGATCTTTTGGAGTTAGCAATGTCATCGGACACTGCAGAAACAGTGAAAAGGGCCAGAGATTTGATGGACTCTGGGGTTGATCCCATGGTTTTGATGTCTCAGTTGGCCAGCTTAATTATGGACATCATTGCGGGAACCAGCAGTACTAATGATGTCAAACATGACTCCTTATATGGTGCTCGGAACTTGACTGAAGCAGAATTGGAGAGATTAAAACATGCTCTGAAGATTCTTTCAGAGGCTGAAAAACAGCTTAGGGTTTCAAGTGAGCGCTCAACATGGTTTACAGCGACTCTGTTGCAGCTTGGTTCAGTGCCTTCTCCAGACCTTAGTCACTCATGCAGCAGGAGGCATAGCTGCAAGACAACTGAGGATGATTCTTCAAGTGCTTCAACTTCAAGAGAAGCAGCCACTTACAAACAGAAGTTAGATGGTCACTATATACCACAAAAATCAACTCAACACGCTTCTGTACAAAGAGCACCCAATGACAATTCCAACCATCAGGGAGATTTGCTGTCAAGAAATAATGGTTTCAGTGTGAATACCAAGCCCTCACATGATCAGTTCGTGGATAGTGGTGCCTCAATTCCCTTGTGTGGAAATGTTATGGCTGGAAATATGAGCCTTAGATGTGTAAACTCTGAAAAGTTAAATGATGTATGGGCACAGTGTATTGAGAAGTGTCATTCAAAGACATTGAGGCAGCTACTACATTATCATGGAAAGCTAGTGTCTATATCTGAAGCTGAAGGTGTTCTGGTTGCTTATGTTGCATTTGAAGATGGAAGTATCAAATCTAGAGCAGAGAGGTTTGTGAGCAGTATCACAAATTCAATGGAAATAGTTCTCAGACGCAATGTAGAGGTTAGAATTGTCCACTTGCCAGGTGGGGAGGCTTCTCTAAACGGTCCAAGTCCAGTTCACTTGCTCGAAGGTCTAAAGCAGGCAGGAACTATGGCAGAACTTGTCAGGGAAAGGAAAAGAGTTGGTTCAAATGCCACAGATGGTTATTCCAATTGTTCTCTGTTTCTGGATGGGACCCACAAGTCAACCTCTGATTCATCAGACTTAGTTGCAGATGGCAATGCTCAAACAAGTGATACAAGAGAGAGCGGACAGGAGATCCCGATGCAGAGAATAGAATCCATTATTCGCGACCAAAGGTTAGAGACTGCTTGGCTACAGGTTGTAGAGAAAGGCACCCCTGGTTCTTTGGGTCGTTTGAAACCTGAAAAGAATCAGGTCCTGCCTCAGGATGGCATTTATTACGAAGATCAGATGGAATCGATGAATTCAATGGGATTATCGTCTCAGCAATGGGATGATGGATTAAACCATGAAGTAAAAATTTTGAGTGCTAACAGTGGGAAGTTCATTCAGCAGGACCAAATAGGTAAAAGGGTTGATCATTATTCTATGTCCCCGAGTTTACTACATGAAAAGGGCAAGTCCGACAAAGATCACCTGGGCGATGAATCAGGGTCAGGTAGAGGAGGTTGCAGTGGATTTTTTCATTGTTATAACACTAGACGTCGTAAAAGAGGAAAGGTAAAAGGGACCCCTGTTCAACCACGCAAAGGTAGACGGTTTTCATTGTTTGGTGTGTGTGGCAAGTCAAGGAAGAAAGCAGAGAAGACAAGATAA

Protein Analysis

1236

Amino Acids

135.81

Weight (kDa)

8.22

Isoelectric Point (pI)

49.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DNA_pol3_delta2 PF13177 457 - 616 1.1e-33 DNA polymerase III, delta subunit
AAA PF00004 478 - 613 2e-08 ATPase family associated with various cellular activities (AAA)
DNAX_ATPase_lid PF22608 620 - 661 1e-09 DNA polymerase III clamp loader subunit, ATPase lid domain
DNA_pol3_gamma3 PF12169 670 - 791 7.1e-09 DNA polymerase III subunits gamma and tau domain III
DnaA_N-like_STI PF23007 898 - 979 1.4e-30 STICHEL, DnaA_N-like alpha-beta domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 780, 1394, 3585
AasI GACNNNNNNGTC 1 cut(s) 3109
AatII GACGTC 1 cut(s) 3598
Acc16I TGCGCA 1 cut(s) 1092
Acc65I GGTACC 2 cut(s) 1592, 1623
AccB1I GGYRCC 6 cut(s) 136, 148, 1592, 1623, 2642, 3263
AccBSI CCGCTC 3 cut(s) 146, 451, 3177
AccI GTMKAC 2 cut(s) 767, 3646
AccII CGCG 3 cut(s) 69, 78, 3219
AclWI GGATC 7 cut(s) 8, 74, 636, 823, 1581, 2135, 3181
AcoI YGGCCR 3 cut(s) 1366, 1866, 2166
AcsI RAATTY 5 cut(s) 1476, 2004, 2893, 3355, 3411
AcuI CTGAAG 4 cut(s) 2274, 2306, 2826, 2832
AcyI GRCGYC 4 cut(s) 8, 137, 149, 3595
AfaI GTAC 8 cut(s) 224, 808, 1337, 1594, 1625, 1807, 2206, 2535
AfeI AGCGCT 1 cut(s) 2333
AfiI CCNNNNNNNGG 7 cut(s) 82, 1068, 1875, 2660, 3316, 3320, 3641
AflII CTTAAG 1 cut(s) 568
AhlI ACTAGT 1 cut(s) 770
AjnI CCWGG 6 cut(s) 374, 1437, 1868, 2947, 3268, 3528
Alw21I GWGCWC 4 cut(s) 45, 1547, 2242, 2545
Alw26I GTCTC 3 cut(s) 2163, 3227, 3378
Alw44I GTGCAC 1 cut(s) 1543
AlwI GGATC 7 cut(s) 8, 74, 636, 823, 1581, 2135, 3181
AlwNI CAGNNNCTG 2 cut(s) 2303, 3310
Ama87I CYCGRG 1 cut(s) 3487
Aor51HI AGCGCT 1 cut(s) 2333
AoxI GGCC 8 cut(s) 60, 580, 686, 693, 1366, 1866, 2112, 2166
ApaLI GTGCAC 1 cut(s) 1543
ApeKI GCWGC 9 cut(s) 131, 1242, 1484, 1756, 2362, 2403, 2418, 2468, 2767
ApoI RAATTY 5 cut(s) 1476, 2004, 2893, 3355, 3411
Asp700I GAANNNNTTC 3 cut(s) 215, 2817, 2907
Asp718I GGTACC 2 cut(s) 1592, 1623
AspLEI GCGC 6 cut(s) 105, 139, 151, 426, 1093, 2334
AsuC2I CCSGG 4 cut(s) 84, 141, 584, 885
AsuHPI GGTGA 3 cut(s) 37, 1136, 3518
AsuII TTCGAA 1 cut(s) 55
AvaI CYCGRG 1 cut(s) 3487
AxyI CCTNAGG 1 cut(s) 3315
BaeGI GKGCMC 2 cut(s) 1547, 2731
BalI TGGCCA 3 cut(s) 1368, 1868, 2168
BanI GGYRCC 6 cut(s) 136, 148, 1592, 1623, 2642, 3263
BanII GRGCYC 2 cut(s) 45, 239
BbsI GAAGAC 1 cut(s) 3704
Bbv12I GWGCWC 4 cut(s) 45, 1547, 2242, 2545
BbvI GCAGC 9 cut(s) 118, 1229, 1471, 1768, 2374, 2405, 2415, 2480, 2779
BceAI ACGGC 1 cut(s) 1090
BcgI CGANNNNNNTGC 4 cut(s) 2067, 2101, 2341, 2375
BciT130I CCWGG 6 cut(s) 376, 1439, 1870, 2949, 3270, 3530
BclI TGATCA 2 cut(s) 2623, 3469
BcnI CCSGG 4 cut(s) 84, 141, 584, 885
BcoDI GTCTC 3 cut(s) 2163, 3227, 3378
BcuI ACTAGT 1 cut(s) 770
BfmI CTRYAG 4 cut(s) 748, 1534, 2094, 3245
BfoI RGCGCY 4 cut(s) 106, 140, 152, 2335
BfrI CTTAAG 1 cut(s) 568
BglII AGATCT 2 cut(s) 125, 2062
BmcAI AGTACT 2 cut(s) 808, 2206
BmeT110I CYCGRG 1 cut(s) 3487
BmrI ACTGGG 1 cut(s) 1164
BmsI GCATC 6 cut(s) 405, 1088, 1670, 1906, 1951, 3183
BmuI ACTGGG 1 cut(s) 1164
BoxI GACNNNNGTC 2 cut(s) 1045, 2391
BpiI GAAGAC 1 cut(s) 3704
BplI GAGNNNNNCTC 4 cut(s) 599, 631, 1752, 1784
BpmI CTGGAG 2 cut(s) 1290, 2367
Bpu10I CCTNAGC 2 cut(s) 671, 2315
Bpu14I TTCGAA 1 cut(s) 55
BpuEI CTTGAG 1 cut(s) 379
BpuMI CCSGG 4 cut(s) 84, 141, 584, 885
Bsa29I ATCGAT 1 cut(s) 3350
BsaHI GRCGYC 4 cut(s) 8, 137, 149, 3595
BsaJI CCNNGG 7 cut(s) 83, 364, 1438, 1447, 2145, 3268, 3529
Bsc4I CCNNNNNNNGG 7 cut(s) 82, 1068, 1875, 2660, 3316, 3320, 3641
Bse118I RCCGGY 2 cut(s) 151, 402
Bse1I ACTGG 6 cut(s) 233, 391, 1159, 1459, 1981, 2981
Bse21I CCTNAGG 1 cut(s) 3315
Bse3DI GCAATG 6 cut(s) 656, 2085, 2187, 2926, 3154, 3386
BseBI CCWGG 6 cut(s) 376, 1439, 1870, 2949, 3270, 3530
BseCI ATCGAT 1 cut(s) 3350
BseDI CCNNGG 7 cut(s) 83, 364, 1438, 1447, 2145, 3268, 3529
BseLI CCNNNNNNNGG 7 cut(s) 82, 1068, 1875, 2660, 3316, 3320, 3641
BseMI GCAATG 6 cut(s) 656, 2085, 2187, 2926, 3154, 3386
BseMII CTCAG 9 cut(s) 597, 615, 623, 1268, 2174, 2421, 2926, 3329, 3389
BseNI ACTGG 6 cut(s) 233, 391, 1159, 1459, 1981, 2981
BseRI GAGGAG 7 cut(s) 293, 296, 299, 302, 1149, 1174, 3570
BseSI GKGCMC 2 cut(s) 1547, 2731
BseXI GCAGC 9 cut(s) 118, 1229, 1471, 1768, 2374, 2405, 2415, 2480, 2779
BseYI CCCAGC 1 cut(s) 1993
Bsh1236I CGCG 3 cut(s) 69, 78, 3219
Bsh1285I CGRYCG 1 cut(s) 407
BshFI GGCC 8 cut(s) 62, 582, 688, 695, 1368, 1868, 2114, 2168
BshNI GGYRCC 6 cut(s) 136, 148, 1592, 1623, 2642, 3263
BshVI ATCGAT 1 cut(s) 3350
BsiEI CGRYCG 1 cut(s) 407
BsiHKAI GWGCWC 4 cut(s) 45, 1547, 2242, 2545
BsiHKCI CYCGRG 1 cut(s) 3487
BsiSI CCGG 8 cut(s) 83, 140, 152, 403, 421, 583, 692, 884
BslFI GGGAC 6 cut(s) 100, 496, 1455, 3115, 3469, 3634
BslI CCNNNNNNNGG 7 cut(s) 82, 1068, 1875, 2660, 3316, 3320, 3641
BsmAI GTCTC 3 cut(s) 2163, 3227, 3378
BsmBI CGTCTC 1 cut(s) 3378
BsmFI GGGAC 6 cut(s) 100, 496, 1455, 3115, 3469, 3634
BsmI GAATGC 1 cut(s) 1945
BsnI GGCC 8 cut(s) 62, 582, 688, 695, 1368, 1868, 2114, 2168
BsoBI CYCGRG 1 cut(s) 3487
Bsp119I TTCGAA 1 cut(s) 55
Bsp1286I GDGCHC 6 cut(s) 45, 239, 1547, 2242, 2545, 2731
Bsp1407I TGTACA 2 cut(s) 222, 2533
Bsp19I CCATGG 1 cut(s) 2145
Bsp68I TCGCGA 1 cut(s) 3219
BspANI GGCC 8 cut(s) 62, 582, 688, 695, 1368, 1868, 2114, 2168
BspCNI CTCAG 9 cut(s) 598, 616, 624, 1269, 2173, 2422, 2925, 3328, 3388
BspDI ATCGAT 1 cut(s) 3350
BspFNI CGCG 3 cut(s) 69, 78, 3219
BspMAI CTGCAG 2 cut(s) 1538, 2098
BspPI GGATC 7 cut(s) 8, 74, 636, 823, 1581, 2135, 3181
BspQI GCTCTTC 1 cut(s) 244
BspT104I TTCGAA 1 cut(s) 55
BspT107I GGYRCC 6 cut(s) 136, 148, 1592, 1623, 2642, 3263
BspTI CTTAAG 1 cut(s) 568
BsrBI CCGCTC 3 cut(s) 146, 451, 3177
BsrDI GCAATG 6 cut(s) 656, 2085, 2187, 2926, 3154, 3386
BsrFI RCCGGY 2 cut(s) 151, 402
BsrGI TGTACA 2 cut(s) 222, 2533
BsrI ACTGG 6 cut(s) 233, 391, 1159, 1459, 1981, 2981
BssAI RCCGGY 2 cut(s) 151, 402
BssECI CCNNGG 7 cut(s) 83, 364, 1438, 1447, 2145, 3268, 3529
BssNI GRCGYC 4 cut(s) 8, 137, 149, 3595
BssT1I CCWWGG 1 cut(s) 2145
Bst2UI CCWGG 6 cut(s) 376, 1439, 1870, 2949, 3270, 3530
Bst4CI ACNGT 6 cut(s) 811, 2104, 2733, 2972, 3428, 3651
Bst6I CTCTTC 6 cut(s) 244, 264, 742, 1287, 1841, 1887
BstACI GRCGYC 4 cut(s) 8, 137, 149, 3595
BstAFI CTTAAG 1 cut(s) 568
BstAPI GCANNNNNTGC 1 cut(s) 1542
BstAUI TGTACA 2 cut(s) 222, 2533
BstBI TTCGAA 1 cut(s) 55
BstC8I GCNNGC 3 cut(s) 67, 2170, 3009
BstDSI CCRYGG 3 cut(s) 364, 1447, 2145
BstENI CCTNNNNNAGG 1 cut(s) 3314
BstFNI CGCG 3 cut(s) 69, 78, 3219
BstH2I RGCGCY 4 cut(s) 106, 140, 152, 2335
BstHHI GCGC 6 cut(s) 105, 139, 151, 426, 1093, 2334
BstMAI GTCTC 3 cut(s) 2163, 3227, 3378
BstMCI CGRYCG 1 cut(s) 407
BstMWI GCNNNNNNNGC 6 cut(s) 75, 143, 667, 1542, 1940, 2834
BstNI CCWGG 6 cut(s) 376, 1439, 1870, 2949, 3270, 3530
BstNSI RCATGY 2 cut(s) 949, 2282
BstPAI GACNNNNGTC 2 cut(s) 1045, 2391
BstSFI CTRYAG 4 cut(s) 748, 1534, 2094, 3245
BstSLI GKGCMC 2 cut(s) 1547, 2731
BstUI CGCG 3 cut(s) 69, 78, 3219
BstV1I GCAGC 9 cut(s) 118, 1229, 1471, 1768, 2374, 2405, 2415, 2480, 2779
BstV2I GAAGAC 1 cut(s) 3704
BstX2I RGATCY 6 cut(s) 125, 628, 815, 1573, 2062, 3186
BstYI RGATCY 6 cut(s) 125, 628, 815, 1573, 2062, 3186
Bsu15I ATCGAT 1 cut(s) 3350
Bsu36I CCTNAGG 1 cut(s) 3315
BsuRI GGCC 8 cut(s) 62, 582, 688, 695, 1368, 1868, 2114, 2168
BsuTUI ATCGAT 1 cut(s) 3350
BtgI CCRYGG 3 cut(s) 364, 1447, 2145
BtgZI GCGATG 1 cut(s) 3549
BtsI GCAGTG 2 cut(s) 2091, 3571
BtuMI TCGCGA 1 cut(s) 3219
Cac8I GCNNGC 3 cut(s) 67, 2170, 3009
CaiI CAGNNNCTG 2 cut(s) 2303, 3310
CfoI GCGC 6 cut(s) 105, 139, 151, 426, 1093, 2334
Cfr10I RCCGGY 2 cut(s) 151, 402
ClaI ATCGAT 1 cut(s) 3350
CseI GACGC 1 cut(s) 2925
Csp6I GTAC 8 cut(s) 223, 807, 1336, 1593, 1624, 1806, 2205, 2534
CspCI CAANNNNNGTGG 4 cut(s) 880, 915, 1168, 1203
CviQI GTAC 8 cut(s) 223, 807, 1336, 1593, 1624, 1806, 2205, 2534
DinI GGCGCC 2 cut(s) 138, 150
DrdI GACNNNNNNGTC 1 cut(s) 3109
DseDI GACNNNNNNGTC 1 cut(s) 3109
EaeI YGGCCR 3 cut(s) 1366, 1866, 2166
Eam1104I CTCTTC 6 cut(s) 244, 264, 742, 1287, 1841, 1887
EarI CTCTTC 6 cut(s) 244, 264, 742, 1287, 1841, 1887
Ecl136II GAGCTC 1 cut(s) 43
Eco130I CCWWGG 1 cut(s) 2145
Eco24I GRGCYC 2 cut(s) 45, 239
Eco32I GATATC 1 cut(s) 431
Eco47III AGCGCT 1 cut(s) 2333
Eco53kI GAGCTC 1 cut(s) 43
Eco57I CTGAAG 4 cut(s) 2274, 2306, 2826, 2832
Eco81I CCTNAGG 1 cut(s) 3315
Eco88I CYCGRG 1 cut(s) 3487
EcoICRI GAGCTC 1 cut(s) 43
EcoNI CCTNNNNNAGG 1 cut(s) 3314
EcoO109I RGGNCCY 4 cut(s) 1442, 3102, 3307, 3621
EcoRI GAATTC 1 cut(s) 3355
EcoRII CCWGG 6 cut(s) 374, 1437, 1868, 2947, 3268, 3528
EcoRV GATATC 1 cut(s) 431
EcoT14I CCWWGG 1 cut(s) 2145
EcoT22I ATGCAT 1 cut(s) 1921
EcoT38I GRGCYC 2 cut(s) 45, 239
EgeI GGCGCC 2 cut(s) 138, 150
EheI GGCGCC 2 cut(s) 138, 150
ErhI CCWWGG 1 cut(s) 2145
Esp3I CGTCTC 1 cut(s) 3378
FaqI GGGAC 6 cut(s) 100, 496, 1455, 3115, 3469, 3634
FauI CCCGC 2 cut(s) 74, 2185
FbaI TGATCA 2 cut(s) 2623, 3469
FblI GTMKAC 2 cut(s) 767, 3646
FriOI GRGCYC 2 cut(s) 45, 239
FspI TGCGCA 1 cut(s) 1092
GlaI GCGC 6 cut(s) 104, 138, 150, 425, 1092, 2333
GsaI CCCAGC 1 cut(s) 1997
GsuI CTGGAG 2 cut(s) 1290, 2367
HaeII RGCGCY 4 cut(s) 106, 140, 152, 2335
HaeIII GGCC 8 cut(s) 62, 582, 688, 695, 1368, 1868, 2114, 2168
HapII CCGG 8 cut(s) 83, 140, 152, 403, 421, 583, 692, 884
HgaI GACGC 1 cut(s) 2925
HhaI GCGC 6 cut(s) 105, 139, 151, 426, 1093, 2334
Hin1I GRCGYC 4 cut(s) 8, 137, 149, 3595
Hin6I GCGC 6 cut(s) 103, 137, 149, 424, 1091, 2332
HinP1I GCGC 6 cut(s) 103, 137, 149, 424, 1091, 2332
HincII GTYRAC 3 cut(s) 768, 1467, 3114
HindII GTYRAC 3 cut(s) 768, 1467, 3114
HindIII AAGCTT 3 cut(s) 321, 668, 1206
HpaII CCGG 8 cut(s) 83, 140, 152, 403, 421, 583, 692, 884
HphI GGTGA 3 cut(s) 37, 1136, 3518
Hpy99I CGWCG 4 cut(s) 253, 1044, 1054, 3600
HpyAV CCTTC 9 cut(s) 168, 205, 226, 978, 1250, 1719, 2388, 2807, 2990
HpyCH4III ACNGT 6 cut(s) 811, 2104, 2733, 2972, 3428, 3651
HpyCH4IV ACGT 2 cut(s) 1463, 3595
HpyF10VI GCNNNNNNNGC 6 cut(s) 75, 143, 667, 1542, 1940, 2834
HpySE526I ACGT 2 cut(s) 1463, 3595
Hsp92I GRCGYC 4 cut(s) 8, 137, 149, 3595
HspAI GCGC 6 cut(s) 103, 137, 149, 424, 1091, 2332
KasI GGCGCC 2 cut(s) 136, 148
KflI GGGWCCC 3 cut(s) 1442, 3102, 3621
KpnI GGTACC 2 cut(s) 1596, 1627
Ksp22I TGATCA 2 cut(s) 2623, 3469
LguI GCTCTTC 1 cut(s) 244
LmnI GCTCC 6 cut(s) 143, 423, 968, 1426, 1510, 1654
Lsp1109I GCAGC 9 cut(s) 118, 1229, 1471, 1768, 2374, 2405, 2415, 2480, 2779
LweI GCATC 6 cut(s) 405, 1088, 1670, 1906, 1951, 3183
MaeII ACGT 2 cut(s) 1463, 3595
MaeIII GTNAC 6 cut(s) 380, 395, 1697, 2055, 2393, 2495
MbiI CCGCTC 3 cut(s) 146, 451, 3177
MfeI CAATTG 1 cut(s) 3079
MflI RGATCY 6 cut(s) 125, 628, 815, 1573, 2062, 3186
MhlI GDGCHC 6 cut(s) 45, 239, 1547, 2242, 2545, 2731
MlsI TGGCCA 3 cut(s) 1368, 1868, 2168
MluNI TGGCCA 3 cut(s) 1368, 1868, 2168
Mly113I GGCGCC 2 cut(s) 137, 149
MlyI GAGTC 5 cut(s) 518, 728, 2123, 2219, 2347
MmeI TCCRAC 4 cut(s) 793, 1956, 2583, 3540
Mox20I TGGCCA 3 cut(s) 1368, 1868, 2168
Mph1103I ATGCAT 1 cut(s) 1921
MroXI GAANNNNTTC 3 cut(s) 215, 2817, 2907
MscI TGGCCA 3 cut(s) 1368, 1868, 2168
MseI TTAA 8 cut(s) 462, 569, 1734, 1848, 2174, 2273, 2714, 3395
MslI CAYNNNNRTG 2 cut(s) 519, 2781
Msp20I TGGCCA 3 cut(s) 1368, 1868, 2168
MspCI CTTAAG 1 cut(s) 568
MspI CCGG 8 cut(s) 83, 140, 152, 403, 421, 583, 692, 884
MunI CAATTG 1 cut(s) 3079
Mva1269I GAATGC 1 cut(s) 1945
MvaI CCWGG 6 cut(s) 376, 1439, 1870, 2949, 3270, 3530
MvnI CGCG 3 cut(s) 69, 78, 3219
MwoI GCNNNNNNNGC 6 cut(s) 75, 143, 667, 1542, 1940, 2834
NarI GGCGCC 2 cut(s) 137, 149
NciI CCSGG 4 cut(s) 84, 141, 584, 885
NcoI CCATGG 1 cut(s) 2145
NmuCI GTSAC 5 cut(s) 380, 395, 1697, 2393, 2495
NruI TCGCGA 1 cut(s) 3219
NsbI TGCGCA 1 cut(s) 1092
NsiI ATGCAT 1 cut(s) 1921
NspI RCATGY 2 cut(s) 949, 2282
NspV TTCGAA 1 cut(s) 55
PciSI GCTCTTC 1 cut(s) 244
PctI GAATGC 1 cut(s) 1945
PdmI GAANNNNTTC 3 cut(s) 215, 2817, 2907
PfoI TCCNGGA 1 cut(s) 374
PleI GAGTC 5 cut(s) 517, 728, 2123, 2219, 2347
PluTI GGCGCC 2 cut(s) 140, 152
PpsI GAGTC 5 cut(s) 517, 728, 2123, 2219, 2347
PpuMI RGGWCCY 4 cut(s) 1442, 3102, 3307, 3621
PshAI GACNNNNGTC 2 cut(s) 1045, 2391
PsiI TTATAA 3 cut(s) 780, 1394, 3585
Psp124BI GAGCTC 1 cut(s) 45
Psp5II RGGWCCY 4 cut(s) 1442, 3102, 3307, 3621
Psp6I CCWGG 6 cut(s) 374, 1437, 1868, 2947, 3268, 3528
PspFI CCCAGC 1 cut(s) 1993
PspGI CCWGG 6 cut(s) 374, 1437, 1868, 2947, 3268, 3528
PspPPI RGGWCCY 4 cut(s) 1442, 3102, 3307, 3621
PsrI GAACNNNNNNTAC 2 cut(s) 2188, 2220
PstI CTGCAG 2 cut(s) 1538, 2098
PstNI CAGNNNCTG 2 cut(s) 2303, 3310
PsuI RGATCY 6 cut(s) 125, 628, 815, 1573, 2062, 3186
RruI TCGCGA 1 cut(s) 3219
RsaI GTAC 8 cut(s) 224, 808, 1337, 1594, 1625, 1807, 2206, 2535
RsaNI GTAC 8 cut(s) 223, 807, 1336, 1593, 1624, 1806, 2205, 2534
RseI CAYNNNNRTG 2 cut(s) 519, 2781
SacI GAGCTC 1 cut(s) 45
SalI GTCGAC 1 cut(s) 766
SapI GCTCTTC 1 cut(s) 244
SaqAI TTAA 8 cut(s) 462, 569, 1734, 1848, 2174, 2273, 2714, 3395
ScaI AGTACT 2 cut(s) 808, 2206
SchI GAGTC 5 cut(s) 518, 728, 2123, 2219, 2347
SduI GDGCHC 6 cut(s) 45, 239, 1547, 2242, 2545, 2731
SfaNI GCATC 6 cut(s) 405, 1088, 1670, 1906, 1951, 3183
SfcI CTRYAG 4 cut(s) 748, 1534, 2094, 3245
SfoI GGCGCC 2 cut(s) 138, 150
SfuI TTCGAA 1 cut(s) 55
SmiMI CAYNNNNRTG 2 cut(s) 519, 2781
SmlI CTYRAG 2 cut(s) 358, 568
SmoI CTYRAG 2 cut(s) 358, 568
SpeI ACTAGT 1 cut(s) 770
SspDI GGCGCC 2 cut(s) 136, 148
SspI AATATT 2 cut(s) 1375, 1739
SstI GAGCTC 1 cut(s) 45
StyI CCWWGG 1 cut(s) 2145
TaaI ACNGT 6 cut(s) 811, 2104, 2733, 2972, 3428, 3651
TaiI ACGT 2 cut(s) 1466, 3598
TaqI TCGA 7 cut(s) 55, 251, 507, 767, 1957, 2994, 3350
TatI WGTACW 5 cut(s) 222, 806, 1335, 2204, 2533
TauI GCSGC 7 cut(s) 65, 137, 149, 198, 201, 338, 451
Tru1I TTAA 8 cut(s) 462, 569, 1734, 1848, 2174, 2273, 2714, 3395
Tru9I TTAA 8 cut(s) 462, 569, 1734, 1848, 2174, 2273, 2714, 3395
TseFI GTSAC 5 cut(s) 380, 395, 1697, 2393, 2495
TseI GCWGC 9 cut(s) 131, 1242, 1484, 1756, 2362, 2403, 2418, 2468, 2767
Tsp45I GTSAC 5 cut(s) 380, 395, 1697, 2393, 2495
TspGWI ACGGA 2 cut(s) 381, 1243
Vha464I CTTAAG 1 cut(s) 568
VneI GTGCAC 1 cut(s) 1543
XagI CCTNNNNNAGG 1 cut(s) 3314
XapI RAATTY 5 cut(s) 1476, 2004, 2893, 3355, 3411
XbaI TCTAGA 3 cut(s) 122, 1082, 2861
XceI RCATGY 2 cut(s) 949, 2282
XcmI CCANNNNNNNNNTGG 4 cut(s) 1445, 2122, 2176, 2948
XmiI GTMKAC 2 cut(s) 767, 3646
XmnI GAANNNNTTC 3 cut(s) 215, 2817, 2907
ZraI GACGTC 1 cut(s) 3596
ZrmI AGTACT 2 cut(s) 808, 2206
Zsp2I ATGCAT 1 cut(s) 1921
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.