Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0003782

Physical Location & Seq

Genomic Coordinates Forward (+)

35242615 .. 35249580

Gene Structure 6966 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G027310.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3672 bp

ATGTCAGTAGCAGCAATGGGTGTGTCTGATCCAAGCCAACTCCACTTGAAGAAAGAGCTCACCCAGATTCGAAAGGCCGCCCGCGTTCTCCGCGATCCGGGGACCACTTCTTCTTGGCGCTCTCCTTTGGCTTCCTCTAGATCTGCTGCGGCCCCCGGAGCGGTGGGGGTTCCTTCTACTTGTTCCACTTCCCACAATACCAACAATGGCGGCGGCGACAACAAGAAGGTGTTCTTGTACAACTGGAAGGGCTCTTCCAAATCGTCGAGAAATGATGACTACGAAGAGGATGAGGAGGAGGATGATTATGGTGTTGAAGATGAGGACGCTGCTTCTTCTGTTGCGGCATTCAGTGTGGATGACAGCTTCAGCCACGGAGATTCCCGGAGTGACACTGGTGGTGGTGGTCAGAGCCGGTCGTTGATGATGCTCCGGCGCAGATATCCGAATCTTCTACCGCCGCTCAAAGATGGTAATGGTAAGAAAGCAAGTAAGAAAATCGAGTCCCATTCTCATGTTTTGTCCAAACATCAGCAGAAAGAGTTGATTCTTGGTAGGAACTTAAGAAAGGGAGGCCGGGATGAGCAATCCGATGACACTGAGGATTACTCTAATTCTGAGGATCTGAGGCACATTAGAGGGGCTTCCCCATTGCTCTTGAAGCTTAGGCACAAGCATTGGCCTCCGGCCTCCACTAATGTTAGGAGAAATGATAGTAGAGTAGAGGACTCTTCTTATTGCTATAGCACTCCTGCATTGTCGACTAGTTCTTATAATAGGTATGGTGTTCGGAATCCAAGTACTGTTGGATCTTGGGATGGAACTGCGACTTCAATGAATGATGGGGATGATGAGGTTGAGGACCATTTGGATATTCCGGGTAGCAAAGGATGTGGGATTCCTTGTTATTGGTCCAAAAAGACCCCGAAGCACAGAGGCATGTATGGAAGCTGTTGCTCCCCTTCGCTTTCTGATACTATAAGGAGAAAAGGAAGTGTCCTTTTGTGTGGAAGTCAAAATGTTTATCCTAGACGACGGGGGTCGTCGTCAGGTTCTAATAAGCGGAGAATTGCATCTAGAAGTGCGCAAGGTGTTCTGCCATTGCTAAACAATAGTGGTGATGGTAGAGGAGGGTCATCCATAGGAACTGGGAGGAGTGATGACGAACTCTCCACAAACTTTGGGGAACTTGATTTGGAAGCTTTGAGTAGATTGGATGGACGGAGATGGTCAAGCTGCCGAAGTCAAGAAGGCTTGGAGATTGTAGCTCTGAATAGTGTTAGAAGTTTTAGCCAGAAGTACAAGCCGATGTTCTTTCGTGAATTGATTGGCCAGAATATTGTGGTGCAATCACTTATAAATGCTATTGATAGGTGTAGGATTGCTCCCGTTTATCTTTTCCAGGGACCCCGTGGAACTGGAAAAACGTCAACAGCTAGAATTTTTGCTGCTTCCTTGAATTGCCTAGCTCCTGATGAAACTAAACCCTGTGGCTACTGCAGGGAGTGCACTGATTTTATGTCTGGTAAGAACAAGGATCTATTGGAAGTTAATGGTACCAATAAGAAAGGAATTGATAAAGTCAGGTACCTATTGAAAACTCTTTCTGTGGCTCCCTCATCAGCATCATCAAGGTATAAGGTTTTTGTGATTGATGAGTGTCACCTTTTGCCTTCTAAGACATGGTTGGCATTTCTTAAATATTTGGAAGAACCACCGCAGCGAGTTGTCTTCATATTCATTACAACTGATTTGGATAATGTTCCTCGTACCATACAATCTCGGTGTCAGAAATATCTCTTCAACAAAATTAAGGATAGTGAGATTGTGGCCAGGTTGAGGAAAATTGCTGTTGAAGAGAATCTAGATGTTGAACCAGATGCATTAGATTTGATTGCTTTGAATGCAGATGGTTCACTTCGAGATGCAGAAACTATGTTGGACCAGTTGAGTTTGCTGGGGAAAAGAATTTCAACATCTCTTGTGAATGAACTTGTGGGAGTTGTTTCCGATGACAAGTTACTAGATCTTTTGGAATTAGCAATGTCATCAGACACTGCAGAAACAGTGAAAAGGGCCAGAGATTTGATGGACTCTGGGGTTGATCCCATGGTTTTGATGTCTCAGTTGGCCAGCTTAATTATGGACATCATTGCGGGAACCAACGGTACTAATGATGTCAAACATGACTCCTTATATGGTGCTCGGAACTTGAACGAAGCAGAATTGGAGAGATTAAAACATGCTCTGAAGATTCTTTCGGAGGCTGAAAAGCAGCTTAGGGTTTCAAGTGAGCGCTCAACATGGTTTACAGCTACTCTGTTGCAGCTTGGTTCAGTGCCTTCTCCAGACCTTAGTCACTCATGCAGCAGGAGGCATAGCTGCAAGACAACTGAGGATGATTCTTCAAGTGCTTCAACTTCAAGAGAAGCAGCCACTTACAAACAGAAGTTAGATGGTCACTATATACTACAAAAATCAACTCAACATGCTTCTGTACAAAGAGCACCAAATGACAATTCCAACCATCAGGGAGATTCGTTGTCAAGAAATAATGGTTTCGGTGTGAATACCAAGCCCTCACATGATCAGTTTGTGGATAATGGGGCCTCGACTCCCTTGTGTGGAAATGTTATGGCTGGAAATATGAGCCTTAGATGTGTAAACTCTGAAAAGTTAAATGATGTATGGGCACAGTGTATTGAGAAGTGTCATTCAAAGACATTGAGGCAGCTACTACATTCTCATGGAAAGCTAGTGTCTATATCTGAAGCTGAAGGTGTTCTGGTTGCTTACGTTGCATTTGAAGATGGAAGTATCAAATCTAGAGCAGAGAGGTTTGTGAGCAGTATCACAAATTCAATGGAAATAGTTCTCAGACGCAATGTCGAGGTTAGAATTGTTCACTTGCCAGGTGGGGAGGCTTCTCTAAATGGTCCAAGTCCAGTTCACTTGCTCGAAGGTCTAAAGCAGGCAGGAACTATGGCAGAACTTGTCAGGGAAAGGAAAAGAGTTGGTTCAAATGCCACAGATGGTTATTCCAATTGTTCTCTGTTTCTGGATGGGACCCACAAGTCAACCTCTGATTCGTCAGACTTAGTTGCAGATGGCAATGCTCAAACAAGTGATACAAAAGAGAGCGGACAGGAGATCCCAATGCAGAGAATAGAATCCATTATTCGCGACCAAAGGTTAGAGACTGCGTGGCTACAGGTTGCAGAGAAAGGCACCCCTGGTTCTTTGAGTCGTTTGAAACCTGAAAAGAATCAGGTCCTGCCTCAGGATGGCATTTATTACGAAGATCAGATGGAATCGATGAATTCAATGGGATTATCCTCTCAGCAATGGGATGATGGATTAAACCATGAAGTAAAAATCTTGAGTGCTAACAGTGGGAAGGTCATTCAACAGGACCAAATAGGTAAAAGAGTTGATCATTATCCTATGTCGCCGAGTTTACTACATGAAAAGGGCAAATCCGACAAAGATCACCTGGGCGATGAATCAGGGTCAGGTAGAGGAGGTTGCAGTGGATTTTTTCGTTGTTATAACACTAGACGTCGTAAAAGAGGAAAGGTAAAAGGGACCCCTGTTCAACCACGCAAAGGTAGACGGTTTTCATTGTTTGGTGTGTGTGGCAAGCCAAGGAAGAAAGCAGAGAAGACAAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005663 GO:0005694 GO:0005886 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009653 GO:0009888 GO:0009987 GO:0010026 GO:0010090 GO:0010091 GO:0016020 GO:0016043 GO:0030154 GO:0032502 GO:0032989 GO:0032991 GO:0033554 GO:0034641 GO:0034645 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0046483 GO:0048468 GO:0048856 GO:0048869 GO:0050896 GO:0051716 GO:0071704 GO:0071840 GO:0071944 GO:0090304 GO:0090558 GO:0090626 GO:1901360 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DNA_pol3_delta2 DNA_pol3_gamma3

Protein Analysis

1223

Amino Acids

134.48

Weight (kDa)

8.73

Isoelectric Point (pI)

48.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DNA_pol3_delta2	PF13177	445 - 604	1.9e-34	DNA polymerase III, delta subunit
AAA	PF00004	466 - 601	6e-09	ATPase family associated with various cellular activities (AAA)
DNAX_ATPase_lid	PF22608	608 - 649	1e-09	DNA polymerase III clamp loader subunit, ATPase lid domain
DNA_pol3_gamma3	PF12169	658 - 779	1.3e-08	DNA polymerase III subunits gamma and tau domain III
DnaA_N-like_STI	PF23007	886 - 967	6.3e-31	STICHEL, DnaA_N-like alpha-beta domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0003782)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14460 AT2G02480 AT2G02480
fragaria_vesca	FvH4_5g27450 FvH4_5g27450
malus_domestica	MD08G1249500.v1.1
prunus_persica	Prupe.1G586700_v2.0.a1 Prupe.1G586700_v2.0.a1 Prupe.1G586700_v2.0.a1 Prupe.1G586700_v2.0.a1 Prupe.1G586700_v2.0.a1
pyrus_communis	pycom08g21590
rosa_chinensis	RchiOBHm_Chr2g0146641 RchiOBHm_Chr7g0218871
rosa_laevigata	RLG00000001635 RLG00000002346 RLG00000002355
rosa_multiflora	Rmu_sc0003823.1_g000001 Rmu_sc0006998.1_g000001
rosa_roxburghii	Rroxscaffold_3G00240440
rosa_rugosa	Rorug07G0179300
rosa_samantha	Rh3AG021300 Rh3CG020600 Rh5BG537900 Rh5CG561800 Rh7AG322600 Rh7BG313700 Rh7CG339400 Rh7DG319800 Rh7DG389400
rosa_wichuraiana	Rw5G027500 Rw7G026930 Rw7G027310 Rw7G028430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	774, 1358, 3549
AasI	GACNNNNNNGTC	1 cut(s)	3073
AatII	GACGTC	1 cut(s)	3562
Acc16I	TGCGCA	1 cut(s)	1086
Acc65I	GGTACC	2 cut(s)	1556, 1587
AccB1I	GGYRCC	3 cut(s)	1556, 1587, 3227
AccBSI	CCGCTC	3 cut(s)	161, 463, 3141
AccI	GTMKAC	2 cut(s)	761, 3610
AccII	CGCG	3 cut(s)	84, 93, 3183
AclWI	GGATC	7 cut(s)	23, 89, 630, 817, 1545, 2099, 3145
AcoI	YGGCCR	3 cut(s)	1330, 1830, 2130
AcsI	RAATTY	4 cut(s)	1440, 1968, 2857, 3319
AcuI	CTGAAG	4 cut(s)	352, 2270, 2790, 2796
AcyI	GRCGYC	1 cut(s)	3559
AfaI	GTAC	8 cut(s)	239, 802, 1301, 1558, 1589, 1771, 2170, 2499
AfeI	AGCGCT	1 cut(s)	2297
AfiI	CCNNNNNNNGG	7 cut(s)	97, 160, 1839, 2624, 3280, 3284, 3605
AflII	CTTAAG	1 cut(s)	562
AhdI	GACNNNNNGTC	1 cut(s)	2885
AhlI	ACTAGT	1 cut(s)	764
AjnI	CCWGG	5 cut(s)	1401, 1832, 2911, 3232, 3492
AjuI	GAANNNNNNNTTGG	2 cut(s)	2503, 2535
Alw21I	GWGCWC	4 cut(s)	60, 1511, 2206, 2509
Alw26I	GTCTC	2 cut(s)	2127, 3191
Alw44I	GTGCAC	1 cut(s)	1507
AlwI	GGATC	7 cut(s)	23, 89, 630, 817, 1545, 2099, 3145
AlwNI	CAGNNNCTG	2 cut(s)	2057, 3274
Aor51HI	AGCGCT	1 cut(s)	2297
ApaLI	GTGCAC	1 cut(s)	1507
ApoI	RAATTY	4 cut(s)	1440, 1968, 2857, 3319
Asp700I	GAANNNNTTC	3 cut(s)	230, 2781, 2871
Asp718I	GGTACC	2 cut(s)	1556, 1587
AspLEI	GCGC	4 cut(s)	120, 438, 1087, 2298
AsuC2I	CCSGG	5 cut(s)	99, 156, 385, 578, 879
AsuHPI	GGTGA	4 cut(s)	52, 1130, 1655, 3482
AsuII	TTCGAA	1 cut(s)	70
AxyI	CCTNAGG	1 cut(s)	3279
BaeGI	GKGCMC	2 cut(s)	1511, 2695
BalI	TGGCCA	3 cut(s)	1332, 1832, 2132
BanI	GGYRCC	3 cut(s)	1556, 1587, 3227
BanII	GRGCYC	2 cut(s)	60, 254
BbsI	GAAGAC	2 cut(s)	1723, 3668
Bbv12I	GWGCWC	4 cut(s)	60, 1511, 2206, 2509
BciT130I	CCWGG	5 cut(s)	1403, 1834, 2913, 3234, 3494
BclI	TGATCA	2 cut(s)	2587, 3433
BcnI	CCSGG	5 cut(s)	99, 156, 385, 578, 879
BcoDI	GTCTC	2 cut(s)	2127, 3191
BcuI	ACTAGT	1 cut(s)	764
BfmI	CTRYAG	4 cut(s)	742, 1498, 2058, 3209
BfoI	RGCGCY	2 cut(s)	121, 2299
BfrI	CTTAAG	1 cut(s)	562
BglII	AGATCT	2 cut(s)	140, 2026
BmcAI	AGTACT	1 cut(s)	802
BmeRI	GACNNNNNGTC	1 cut(s)	2885
BmrI	ACTGGG	1 cut(s)	1158
BmsI	GCATC	5 cut(s)	417, 1082, 1634, 1870, 1915
BmuI	ACTGGG	1 cut(s)	1158
BoxI	GACNNNNGTC	2 cut(s)	1039, 2355
BpiI	GAAGAC	2 cut(s)	1723, 3668
BplI	GAGNNNNNCTC	2 cut(s)	593, 625
BpmI	CTGGAG	1 cut(s)	2331
Bpu10I	CCTNAGC	2 cut(s)	665, 2279
Bpu14I	TTCGAA	1 cut(s)	70
BpuEI	CTTGAG	1 cut(s)	3400
BpuMI	CCSGG	5 cut(s)	99, 156, 385, 578, 879
Bsa29I	ATCGAT	1 cut(s)	3314
BsaBI	GATNNNNATC	1 cut(s)	3438
BsaHI	GRCGYC	1 cut(s)	3559
BsaJI	CCNNGG	9 cut(s)	98, 154, 373, 1402, 1411, 2109, 3232, 3493, 3644
BsaXI	ACNNNNNCTCC	2 cut(s)	1154, 1184
Bsc4I	CCNNNNNNNGG	7 cut(s)	97, 160, 1839, 2624, 3280, 3284, 3605
Bse118I	RCCGGY	1 cut(s)	414
Bse1I	ACTGG	6 cut(s)	248, 400, 1153, 1423, 1945, 2945
Bse21I	CCTNAGG	1 cut(s)	3279
Bse3DI	GCAATG	8 cut(s)	21, 650, 1100, 2049, 2151, 2890, 3118, 3350
Bse8I	GATNNNNATC	1 cut(s)	3438
BseBI	CCWGG	5 cut(s)	1403, 1834, 2913, 3234, 3494
BseCI	ATCGAT	1 cut(s)	3314
BseDI	CCNNGG	9 cut(s)	98, 154, 373, 1402, 1411, 2109, 3232, 3493, 3644
BseJI	GATNNNNATC	1 cut(s)	3438
BseLI	CCNNNNNNNGG	7 cut(s)	97, 160, 1839, 2624, 3280, 3284, 3605
BseMI	GCAATG	8 cut(s)	21, 650, 1100, 2049, 2151, 2890, 3118, 3350
BseMII	CTCAG	8 cut(s)	591, 609, 617, 2138, 2385, 2890, 3293, 3353
BseNI	ACTGG	6 cut(s)	248, 400, 1153, 1423, 1945, 2945
BseRI	GAGGAG	5 cut(s)	308, 311, 1143, 1168, 3534
BseSI	GKGCMC	2 cut(s)	1511, 2695
BseYI	CCCAGC	1 cut(s)	1957
Bsh1236I	CGCG	3 cut(s)	84, 93, 3183
Bsh1285I	CGRYCG	1 cut(s)	419
BshNI	GGYRCC	3 cut(s)	1556, 1587, 3227
BshVI	ATCGAT	1 cut(s)	3314
BsiEI	CGRYCG	1 cut(s)	419
BsiHKAI	GWGCWC	4 cut(s)	60, 1511, 2206, 2509
BsiSI	CCGG	8 cut(s)	98, 156, 385, 415, 433, 577, 686, 878
BslFI	GGGAC	5 cut(s)	115, 490, 1419, 3079, 3598
BslI	CCNNNNNNNGG	7 cut(s)	97, 160, 1839, 2624, 3280, 3284, 3605
BsmAI	GTCTC	2 cut(s)	2127, 3191
BsmFI	GGGAC	5 cut(s)	115, 490, 1419, 3079, 3598
BsmI	GAATGC	2 cut(s)	347, 1909
Bsp119I	TTCGAA	1 cut(s)	70
Bsp1286I	GDGCHC	6 cut(s)	60, 254, 1511, 2206, 2509, 2695
Bsp1407I	TGTACA	2 cut(s)	237, 2497
Bsp19I	CCATGG	1 cut(s)	2109
Bsp68I	TCGCGA	1 cut(s)	3183
BspCNI	CTCAG	8 cut(s)	592, 610, 618, 2137, 2386, 2889, 3292, 3352
BspDI	ATCGAT	1 cut(s)	3314
BspFNI	CGCG	3 cut(s)	84, 93, 3183
BspMAI	CTGCAG	2 cut(s)	1502, 2062
BspPI	GGATC	7 cut(s)	23, 89, 630, 817, 1545, 2099, 3145
BspQI	GCTCTTC	1 cut(s)	259
BspT104I	TTCGAA	1 cut(s)	70
BspT107I	GGYRCC	3 cut(s)	1556, 1587, 3227
BspTI	CTTAAG	1 cut(s)	562
BsrBI	CCGCTC	3 cut(s)	161, 463, 3141
BsrDI	GCAATG	8 cut(s)	21, 650, 1100, 2049, 2151, 2890, 3118, 3350
BsrFI	RCCGGY	1 cut(s)	414
BsrGI	TGTACA	2 cut(s)	237, 2497
BsrI	ACTGG	6 cut(s)	248, 400, 1153, 1423, 1945, 2945
BssAI	RCCGGY	1 cut(s)	414
BssECI	CCNNGG	9 cut(s)	98, 154, 373, 1402, 1411, 2109, 3232, 3493, 3644
BssNI	GRCGYC	1 cut(s)	3559
BssT1I	CCWWGG	2 cut(s)	2109, 3644
Bst2UI	CCWGG	5 cut(s)	1403, 1834, 2913, 3234, 3494
Bst4CI	ACNGT	6 cut(s)	805, 2068, 2168, 2697, 3392, 3615
Bst6I	CTCTTC	5 cut(s)	259, 279, 736, 1805, 1851
BstACI	GRCGYC	1 cut(s)	3559
BstAFI	CTTAAG	1 cut(s)	562
BstAPI	GCANNNNNTGC	1 cut(s)	1506
BstAUI	TGTACA	2 cut(s)	237, 2497
BstBI	TTCGAA	1 cut(s)	70
BstC8I	GCNNGC	4 cut(s)	82, 2134, 2973, 3641
BstDSI	CCRYGG	3 cut(s)	373, 1411, 2109
BstENI	CCTNNNNNAGG	1 cut(s)	3278
BstFNI	CGCG	3 cut(s)	84, 93, 3183
BstH2I	RGCGCY	2 cut(s)	121, 2299
BstHHI	GCGC	4 cut(s)	120, 438, 1087, 2298
BstMAI	GTCTC	2 cut(s)	2127, 3191
BstMCI	CGRYCG	1 cut(s)	419
BstMWI	GCNNNNNNNGC	6 cut(s)	90, 158, 661, 1506, 1904, 2798
BstNI	CCWGG	5 cut(s)	1403, 1834, 2913, 3234, 3494
BstNSI	RCATGY	3 cut(s)	943, 2246, 2492
BstPAI	GACNNNNGTC	2 cut(s)	1039, 2355
BstSFI	CTRYAG	4 cut(s)	742, 1498, 2058, 3209
BstSLI	GKGCMC	2 cut(s)	1511, 2695
BstUI	CGCG	3 cut(s)	84, 93, 3183
BstV2I	GAAGAC	2 cut(s)	1723, 3668
BstX2I	RGATCY	6 cut(s)	140, 622, 809, 1537, 2026, 3150
BstYI	RGATCY	6 cut(s)	140, 622, 809, 1537, 2026, 3150
Bsu15I	ATCGAT	1 cut(s)	3314
Bsu36I	CCTNAGG	1 cut(s)	3279
BsuTUI	ATCGAT	1 cut(s)	3314
BtgI	CCRYGG	3 cut(s)	373, 1411, 2109
BtgZI	GCGATG	1 cut(s)	3513
BtsI	GCAGTG	2 cut(s)	2055, 3535
BtuMI	TCGCGA	1 cut(s)	3183
Cac8I	GCNNGC	4 cut(s)	82, 2134, 2973, 3641
CaiI	CAGNNNCTG	2 cut(s)	2057, 3274
CfoI	GCGC	4 cut(s)	120, 438, 1087, 2298
Cfr10I	RCCGGY	1 cut(s)	414
ClaI	ATCGAT	1 cut(s)	3314
CseI	GACGC	2 cut(s)	335, 2889
Csp6I	GTAC	8 cut(s)	238, 801, 1300, 1557, 1588, 1770, 2169, 2498
CspCI	CAANNNNNGTGG	4 cut(s)	874, 909, 1162, 1197
CviQI	GTAC	8 cut(s)	238, 801, 1300, 1557, 1588, 1770, 2169, 2498
DrdI	GACNNNNNNGTC	1 cut(s)	3073
DriI	GACNNNNNGTC	1 cut(s)	2885
DseDI	GACNNNNNNGTC	1 cut(s)	3073
EaeI	YGGCCR	3 cut(s)	1330, 1830, 2130
Eam1104I	CTCTTC	5 cut(s)	259, 279, 736, 1805, 1851
Eam1105I	GACNNNNNGTC	1 cut(s)	2885
EarI	CTCTTC	5 cut(s)	259, 279, 736, 1805, 1851
Ecl136II	GAGCTC	1 cut(s)	58
Eco130I	CCWWGG	2 cut(s)	2109, 3644
Eco24I	GRGCYC	2 cut(s)	60, 254
Eco32I	GATATC	1 cut(s)	443
Eco47III	AGCGCT	1 cut(s)	2297
Eco53kI	GAGCTC	1 cut(s)	58
Eco57I	CTGAAG	4 cut(s)	352, 2270, 2790, 2796
Eco81I	CCTNAGG	1 cut(s)	3279
EcoICRI	GAGCTC	1 cut(s)	58
EcoNI	CCTNNNNNAGG	1 cut(s)	3278
EcoO109I	RGGNCCY	5 cut(s)	1406, 2607, 3066, 3271, 3585
EcoRI	GAATTC	1 cut(s)	3319
EcoRII	CCWGG	5 cut(s)	1401, 1832, 2911, 3232, 3492
EcoRV	GATATC	1 cut(s)	443
EcoT14I	CCWWGG	2 cut(s)	2109, 3644
EcoT22I	ATGCAT	1 cut(s)	1885
EcoT38I	GRGCYC	2 cut(s)	60, 254
ErhI	CCWWGG	2 cut(s)	2109, 3644
FalI	AAGNNNNNCTT	2 cut(s)	218, 250
FaqI	GGGAC	5 cut(s)	115, 490, 1419, 3079, 3598
FauI	CCCGC	2 cut(s)	89, 2149
FbaI	TGATCA	2 cut(s)	2587, 3433
FblI	GTMKAC	2 cut(s)	761, 3610
FriOI	GRGCYC	2 cut(s)	60, 254
FspI	TGCGCA	1 cut(s)	1086
GlaI	GCGC	4 cut(s)	119, 437, 1086, 2297
GsaI	CCCAGC	1 cut(s)	1961
GsuI	CTGGAG	1 cut(s)	2331
HaeII	RGCGCY	2 cut(s)	121, 2299
HapII	CCGG	8 cut(s)	98, 156, 385, 415, 433, 577, 686, 878
HgaI	GACGC	2 cut(s)	335, 2889
HhaI	GCGC	4 cut(s)	120, 438, 1087, 2298
Hin1I	GRCGYC	1 cut(s)	3559
Hin6I	GCGC	4 cut(s)	118, 436, 1085, 2296
HinP1I	GCGC	4 cut(s)	118, 436, 1085, 2296
HincII	GTYRAC	3 cut(s)	762, 1431, 3078
HindII	GTYRAC	3 cut(s)	762, 1431, 3078
HindIII	AAGCTT	2 cut(s)	662, 1200
HpaII	CCGG	8 cut(s)	98, 156, 385, 415, 433, 577, 686, 878
HphI	GGTGA	4 cut(s)	52, 1130, 1655, 3482
Hpy99I	CGWCG	4 cut(s)	268, 1038, 1048, 3564
HpyCH4III	ACNGT	6 cut(s)	805, 2068, 2168, 2697, 3392, 3615
HpyCH4IV	ACGT	3 cut(s)	1427, 2796, 3559
HpyF10VI	GCNNNNNNNGC	6 cut(s)	90, 158, 661, 1506, 1904, 2798
HpySE526I	ACGT	3 cut(s)	1427, 2796, 3559
Hsp92I	GRCGYC	1 cut(s)	3559
HspAI	GCGC	4 cut(s)	118, 436, 1085, 2296
KflI	GGGWCCC	3 cut(s)	1406, 3066, 3585
KpnI	GGTACC	2 cut(s)	1560, 1591
Ksp22I	TGATCA	2 cut(s)	2587, 3433
LguI	GCTCTTC	1 cut(s)	259
LmnI	GCTCC	6 cut(s)	158, 435, 962, 1390, 1474, 1618
LweI	GCATC	5 cut(s)	417, 1082, 1634, 1870, 1915
MaeII	ACGT	3 cut(s)	1427, 2796, 3559
MaeIII	GTNAC	5 cut(s)	389, 1661, 2019, 2357, 2459
MbiI	CCGCTC	3 cut(s)	161, 463, 3141
MfeI	CAATTG	1 cut(s)	3043
MflI	RGATCY	6 cut(s)	140, 622, 809, 1537, 2026, 3150
MhlI	GDGCHC	6 cut(s)	60, 254, 1511, 2206, 2509, 2695
MlsI	TGGCCA	3 cut(s)	1332, 1832, 2132
MluNI	TGGCCA	3 cut(s)	1332, 1832, 2132
MlyI	GAGTC	6 cut(s)	512, 722, 2087, 2183, 2608, 3253
MmeI	TCCRAC	4 cut(s)	787, 1920, 2547, 3504
Mox20I	TGGCCA	3 cut(s)	1332, 1832, 2132
Mph1103I	ATGCAT	1 cut(s)	1885
MroXI	GAANNNNTTC	3 cut(s)	230, 2781, 2871
MscI	TGGCCA	3 cut(s)	1332, 1832, 2132
MseI	TTAA	8 cut(s)	563, 1551, 1698, 1812, 2138, 2237, 2678, 3359
MslI	CAYNNNNRTG	2 cut(s)	513, 2745
Msp20I	TGGCCA	3 cut(s)	1332, 1832, 2132
MspCI	CTTAAG	1 cut(s)	562
MspI	CCGG	8 cut(s)	98, 156, 385, 415, 433, 577, 686, 878
MunI	CAATTG	1 cut(s)	3043
Mva1269I	GAATGC	2 cut(s)	347, 1909
MvaI	CCWGG	5 cut(s)	1403, 1834, 2913, 3234, 3494
MvnI	CGCG	3 cut(s)	84, 93, 3183
MwoI	GCNNNNNNNGC	6 cut(s)	90, 158, 661, 1506, 1904, 2798
NciI	CCSGG	5 cut(s)	99, 156, 385, 578, 879
NcoI	CCATGG	1 cut(s)	2109
NmeAIII	GCCGAG	1 cut(s)	3477
NmuCI	GTSAC	4 cut(s)	389, 1661, 2357, 2459
NruI	TCGCGA	1 cut(s)	3183
NsbI	TGCGCA	1 cut(s)	1086
NsiI	ATGCAT	1 cut(s)	1885
NspI	RCATGY	3 cut(s)	943, 2246, 2492
NspV	TTCGAA	1 cut(s)	70
PciSI	GCTCTTC	1 cut(s)	259
PctI	GAATGC	2 cut(s)	347, 1909
PdmI	GAANNNNTTC	3 cut(s)	230, 2781, 2871
PfoI	TCCNGGA	1 cut(s)	383
PleI	GAGTC	6 cut(s)	511, 722, 2087, 2183, 2608, 3252
PpsI	GAGTC	6 cut(s)	511, 722, 2087, 2183, 2608, 3252
PpuMI	RGGWCCY	4 cut(s)	1406, 3066, 3271, 3585
PshAI	GACNNNNGTC	2 cut(s)	1039, 2355
PsiI	TTATAA	3 cut(s)	774, 1358, 3549
Psp124BI	GAGCTC	1 cut(s)	60
Psp5II	RGGWCCY	4 cut(s)	1406, 3066, 3271, 3585
Psp6I	CCWGG	5 cut(s)	1401, 1832, 2911, 3232, 3492
PspFI	CCCAGC	1 cut(s)	1957
PspGI	CCWGG	5 cut(s)	1401, 1832, 2911, 3232, 3492
PspPPI	RGGWCCY	4 cut(s)	1406, 3066, 3271, 3585
PsrI	GAACNNNNNNTAC	2 cut(s)	2152, 2184
PstI	CTGCAG	2 cut(s)	1502, 2062
PstNI	CAGNNNCTG	2 cut(s)	2057, 3274
PsuI	RGATCY	6 cut(s)	140, 622, 809, 1537, 2026, 3150
RruI	TCGCGA	1 cut(s)	3183
RsaI	GTAC	8 cut(s)	239, 802, 1301, 1558, 1589, 1771, 2170, 2499
RsaNI	GTAC	8 cut(s)	238, 801, 1300, 1557, 1588, 1770, 2169, 2498
RseI	CAYNNNNRTG	2 cut(s)	513, 2745
SacI	GAGCTC	1 cut(s)	60
SalI	GTCGAC	1 cut(s)	760
SapI	GCTCTTC	1 cut(s)	259
SaqAI	TTAA	8 cut(s)	563, 1551, 1698, 1812, 2138, 2237, 2678, 3359
ScaI	AGTACT	1 cut(s)	802
SchI	GAGTC	6 cut(s)	512, 722, 2087, 2183, 2608, 3253
SduI	GDGCHC	6 cut(s)	60, 254, 1511, 2206, 2509, 2695
SfaNI	GCATC	5 cut(s)	417, 1082, 1634, 1870, 1915
SfcI	CTRYAG	4 cut(s)	742, 1498, 2058, 3209
SfuI	TTCGAA	1 cut(s)	70
SmiMI	CAYNNNNRTG	2 cut(s)	513, 2745
SmlI	CTYRAG	2 cut(s)	562, 3379
SmoI	CTYRAG	2 cut(s)	562, 3379
SpeI	ACTAGT	1 cut(s)	764
SspI	AATATT	2 cut(s)	1339, 1703
SstI	GAGCTC	1 cut(s)	60
StyI	CCWWGG	2 cut(s)	2109, 3644
TaaI	ACNGT	6 cut(s)	805, 2068, 2168, 2697, 3392, 3615
TaiI	ACGT	3 cut(s)	1430, 2799, 3562
TaqI	TCGA	9 cut(s)	70, 266, 501, 761, 1921, 2612, 2889, 2958, 3314
TatI	WGTACW	4 cut(s)	237, 800, 1299, 2497
TauI	GCSGC	6 cut(s)	80, 152, 213, 216, 347, 463
Tru1I	TTAA	8 cut(s)	563, 1551, 1698, 1812, 2138, 2237, 2678, 3359
Tru9I	TTAA	8 cut(s)	563, 1551, 1698, 1812, 2138, 2237, 2678, 3359
TseFI	GTSAC	4 cut(s)	389, 1661, 2357, 2459
Tsp45I	GTSAC	4 cut(s)	389, 1661, 2357, 2459
TspGWI	ACGGA	2 cut(s)	390, 1237
Vha464I	CTTAAG	1 cut(s)	562
VneI	GTGCAC	1 cut(s)	1507
XagI	CCTNNNNNAGG	1 cut(s)	3278
XapI	RAATTY	4 cut(s)	1440, 1968, 2857, 3319
XbaI	TCTAGA	4 cut(s)	137, 1076, 1864, 2825
XceI	RCATGY	3 cut(s)	943, 2246, 2492
XcmI	CCANNNNNNNNNTGG	3 cut(s)	1409, 2086, 2140
XmiI	GTMKAC	2 cut(s)	761, 3610
XmnI	GAANNNNTTC	3 cut(s)	230, 2781, 2871
ZraI	GACGTC	1 cut(s)	3560
ZrmI	AGTACT	1 cut(s)	802
Zsp2I	ATGCAT	1 cut(s)	1885

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.