Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0003782

Physical Location & Seq

Genomic Coordinates Reverse (-)

18560956 .. 18562202

Gene Structure 1247 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000001635

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGCTCACCCAGATTCGAAAGGCTGGTCGGGTTATCTGCGATCCCGTGACCACTTCTTCTTGGCTCTTACCTCTGGTTTCCTCTAGATCTGCAGCGGCGGCGGCGATTCCTTCTACTTTTTCCACTTCCCACAATACCAACAATGAGGGCAGTGATAACAAGAAGGTCATCCCTGACTTCGACCACGACCTCTGCTCCACCGCCCTTGGCCTGAGAAAGATCATCTCGGTCTCACCAACACGACGACCCTGGCTACTACCACTGTCACCGGCAGGAACGCATAACCCTTCCGACCCCGAAGCACTGGTTTGCTCACCCTCTGTTATCAGATCATCCCCGCGATCTGATCGAAGGAATCCTGACAACAACCGCTCCCACGCACTGGAAAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005663 GO:0005694 GO:0005886 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009653 GO:0009888 GO:0009987 GO:0010026 GO:0010090 GO:0010091 GO:0016020 GO:0016043 GO:0030154 GO:0032502 GO:0032989 GO:0032991 GO:0033554 GO:0034641 GO:0034645 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0046483 GO:0048468 GO:0048856 GO:0048869 GO:0050896 GO:0051716 GO:0071704 GO:0071840 GO:0071944 GO:0090304 GO:0090558 GO:0090626 GO:1901360 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DNA_pol3_delta2 DNA_pol3_gamma3

Protein Analysis

131

Amino Acids

14.06

Weight (kDa)

9.41

Isoelectric Point (pI)

69.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003782)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14460 AT2G02480 AT2G02480
fragaria_vesca	FvH4_5g27450 FvH4_5g27450
malus_domestica	MD08G1249500.v1.1
prunus_persica	Prupe.1G586700_v2.0.a1 Prupe.1G586700_v2.0.a1 Prupe.1G586700_v2.0.a1 Prupe.1G586700_v2.0.a1 Prupe.1G586700_v2.0.a1
pyrus_communis	pycom08g21590
rosa_chinensis	RchiOBHm_Chr2g0146641 RchiOBHm_Chr7g0218871
rosa_laevigata	RLG00000001635 RLG00000002346 RLG00000002355
rosa_multiflora	Rmu_sc0003823.1_g000001 Rmu_sc0006998.1_g000001
rosa_roxburghii	Rroxscaffold_3G00240440
rosa_rugosa	Rorug07G0179300
rosa_samantha	Rh3AG021300 Rh3CG020600 Rh5BG537900 Rh5CG561800 Rh7AG322600 Rh7BG313700 Rh7CG339400 Rh7DG319800 Rh7DG389400
rosa_wichuraiana	Rw5G027500 Rw7G026930 Rw7G027310 Rw7G028430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	382
AccBSI	CCGCTC	1 cut(s)	372
AccII	CGCG	1 cut(s)	340
AciI	CCGC	6 cut(s)	95, 98, 101, 201, 338, 370
AclWI	GGATC	1 cut(s)	35
AfiI	CCNNNNNNNGG	1 cut(s)	382
AjnI	CCWGG	1 cut(s)	248
Alw26I	GTCTC	1 cut(s)	235
AlwI	GGATC	1 cut(s)	35
AoxI	GGCC	1 cut(s)	208
ApeKI	GCWGC	1 cut(s)	92
ArsI	GACNNNNNNTTYG	2 cut(s)	10, 42
AsuHPI	GGTGA	3 cut(s)	225, 258, 306
AsuII	TTCGAA	1 cut(s)	16
BbvI	GCAGC	1 cut(s)	104
BciT130I	CCWGG	1 cut(s)	250
BcoDI	GTCTC	1 cut(s)	235
BfaI	CTAG	2 cut(s)	84, 391
BfmI	CTRYAG	1 cut(s)	90
BglII	AGATCT	1 cut(s)	86
BisI	GCNGC	4 cut(s)	93, 96, 99, 102
BlsI	GCNGC	4 cut(s)	94, 97, 100, 103
Bme1390I	CCNGG	1 cut(s)	250
BmrFI	CCNGG	1 cut(s)	250
Bpu14I	TTCGAA	1 cut(s)	16
BsaI	GGTCTC	1 cut(s)	235
BsaJI	CCNNGG	2 cut(s)	205, 248
BsaXI	ACNNNNNCTCC	4 cut(s)	179, 209, 356, 386
Bsc4I	CCNNNNNNNGG	1 cut(s)	382
Bse118I	RCCGGY	1 cut(s)	268
Bse1I	ACTGG	2 cut(s)	309, 387
BseBI	CCWGG	1 cut(s)	250
BseDI	CCNNGG	2 cut(s)	205, 248
BseGI	GGATG	2 cut(s)	168, 332
BseLI	CCNNNNNNNGG	1 cut(s)	382
BseMII	CTCAG	1 cut(s)	203
BseNI	ACTGG	2 cut(s)	309, 387
BseXI	GCAGC	1 cut(s)	104
Bsh1236I	CGCG	1 cut(s)	340
BshFI	GGCC	1 cut(s)	210
BsiSI	CCGG	1 cut(s)	269
BslI	CCNNNNNNNGG	1 cut(s)	382
BsmAI	GTCTC	1 cut(s)	235
BsnI	GGCC	1 cut(s)	210
Bso31I	GGTCTC	1 cut(s)	235
Bsp119I	TTCGAA	1 cut(s)	16
Bsp143I	GATC	6 cut(s)	40, 86, 219, 329, 341, 346
BspACI	CCGC	6 cut(s)	95, 98, 101, 201, 338, 370
BspANI	GGCC	1 cut(s)	210
BspCNI	CTCAG	1 cut(s)	204
BspFNI	CGCG	1 cut(s)	340
BspMAI	CTGCAG	1 cut(s)	94
BspPI	GGATC	1 cut(s)	35
BspT104I	TTCGAA	1 cut(s)	16
BspTNI	GGTCTC	1 cut(s)	235
BsrBI	CCGCTC	1 cut(s)	372
BsrFI	RCCGGY	1 cut(s)	268
BsrI	ACTGG	2 cut(s)	309, 387
BssAI	RCCGGY	1 cut(s)	268
BssECI	CCNNGG	2 cut(s)	205, 248
BssMI	GATC	6 cut(s)	40, 86, 219, 329, 341, 346
BssT1I	CCWWGG	1 cut(s)	205
Bst2UI	CCWGG	1 cut(s)	250
Bst4CI	ACNGT	1 cut(s)	264
BstBI	TTCGAA	1 cut(s)	16
BstDEI	CTNAG	1 cut(s)	212
BstF5I	GGATG	2 cut(s)	168, 332
BstFNI	CGCG	1 cut(s)	340
BstKTI	GATC	6 cut(s)	43, 89, 222, 332, 344, 349
BstMAI	GTCTC	1 cut(s)	235
BstMBI	GATC	6 cut(s)	40, 86, 219, 329, 341, 346
BstMWI	GCNNNNNNNGC	2 cut(s)	98, 101
BstNI	CCWGG	1 cut(s)	250
BstSCI	CCNGG	1 cut(s)	248
BstSFI	CTRYAG	1 cut(s)	90
BstUI	CGCG	1 cut(s)	340
BstV1I	GCAGC	1 cut(s)	104
BstX2I	RGATCY	1 cut(s)	86
BstYI	RGATCY	1 cut(s)	86
BsuRI	GGCC	1 cut(s)	210
BtsCI	GGATG	2 cut(s)	168, 332
BtsI	GCAGTG	1 cut(s)	157
BtsIMutI	CAGTG	4 cut(s)	157, 260, 302, 380
Cfr10I	RCCGGY	1 cut(s)	268
CspCI	CAANNNNNGTGG	2 cut(s)	187, 222
CviJI	RGCY	4 cut(s)	23, 64, 210, 253
CviKI_1	RGCY	4 cut(s)	23, 64, 210, 253
DdeI	CTNAG	1 cut(s)	212
DpnI	GATC	6 cut(s)	42, 88, 221, 331, 343, 348
DpnII	GATC	6 cut(s)	40, 86, 219, 329, 341, 346
Eco130I	CCWWGG	1 cut(s)	205
Eco31I	GGTCTC	1 cut(s)	235
EcoRII	CCWGG	1 cut(s)	248
EcoT14I	CCWWGG	1 cut(s)	205
ErhI	CCWWGG	1 cut(s)	205
FaiI	YATR	1 cut(s)	282
FauI	CCCGC	1 cut(s)	345
Fnu4HI	GCNGC	4 cut(s)	93, 96, 99, 102
FokI	GGATG	2 cut(s)	155, 319
Fsp4HI	GCNGC	4 cut(s)	93, 96, 99, 102
FspBI	CTAG	2 cut(s)	84, 391
GluI	GCNGC	4 cut(s)	93, 96, 99, 102
HaeIII	GGCC	1 cut(s)	210
HapII	CCGG	1 cut(s)	269
HinfI	GANTC	3 cut(s)	13, 106, 355
HpaII	CCGG	1 cut(s)	269
HphI	GGTGA	3 cut(s)	225, 258, 306
Hpy188I	TCNGA	3 cut(s)	292, 329, 346
Hpy188III	TCNNGA	2 cut(s)	84, 359
Hpy99I	CGWCG	1 cut(s)	246
HpyAV	CCTTC	4 cut(s)	120, 157, 297, 345
HpyCH4III	ACNGT	1 cut(s)	264
HpyCH4V	TGCA	1 cut(s)	92
HpyF10VI	GCNNNNNNNGC	2 cut(s)	98, 101
HpyF3I	CTNAG	1 cut(s)	212
Kzo9I	GATC	6 cut(s)	40, 86, 219, 329, 341, 346
LmnI	GCTCC	2 cut(s)	200, 377
Lsp1109I	GCAGC	1 cut(s)	104
MaeI	CTAG	2 cut(s)	84, 391
MaeIII	GTNAC	2 cut(s)	46, 264
MalI	GATC	6 cut(s)	42, 88, 221, 331, 343, 348
MbiI	CCGCTC	1 cut(s)	372
MboI	GATC	6 cut(s)	40, 86, 219, 329, 341, 346
MboII	GAAGA	1 cut(s)	48
MflI	RGATCY	1 cut(s)	86
MmeI	TCCRAC	1 cut(s)	315
MnlI	CCTC	5 cut(s)	81, 91, 139, 200, 328
MspA1I	CMGCKG	1 cut(s)	95
MspI	CCGG	1 cut(s)	269
MspR9I	CCNGG	1 cut(s)	250
MvaI	CCWGG	1 cut(s)	250
MvnI	CGCG	1 cut(s)	340
MwoI	GCNNNNNNNGC	2 cut(s)	98, 101
NdeII	GATC	6 cut(s)	40, 86, 219, 329, 341, 346
NmuCI	GTSAC	2 cut(s)	46, 264
NspV	TTCGAA	1 cut(s)	16
PfeI	GAWTC	3 cut(s)	13, 106, 355
PflMI	CCANNNNNTGG	1 cut(s)	382
PkrI	GCNGC	4 cut(s)	94, 97, 100, 103
Psp6I	CCWGG	1 cut(s)	248
PspGI	CCWGG	1 cut(s)	248
PstI	CTGCAG	1 cut(s)	94
PsuI	RGATCY	1 cut(s)	86
SatI	GCNGC	4 cut(s)	93, 96, 99, 102
Sau3AI	GATC	6 cut(s)	40, 86, 219, 329, 341, 346
ScrFI	CCNGG	1 cut(s)	250
SetI	ASST	3 cut(s)	73, 168, 192
SfcI	CTRYAG	1 cut(s)	90
SfuI	TTCGAA	1 cut(s)	16
SsiI	CCGC	6 cut(s)	95, 98, 101, 201, 338, 370
SspMI	CTAG	2 cut(s)	84, 391
StyD4I	CCNGG	1 cut(s)	248
StyI	CCWWGG	1 cut(s)	205
TaaI	ACNGT	1 cut(s)	264
TaqI	TCGA	3 cut(s)	16, 180, 349
TaqII	GACCGA	1 cut(s)	217
TauI	GCSGC	3 cut(s)	98, 101, 104
TfiI	GAWTC	3 cut(s)	13, 106, 355
TscAI	CASTG	4 cut(s)	157, 267, 309, 387
TseFI	GTSAC	2 cut(s)	46, 264
TseI	GCWGC	1 cut(s)	92
Tsp45I	GTSAC	2 cut(s)	46, 264
TspRI	CASTG	4 cut(s)	157, 267, 309, 387
Van91I	CCANNNNNTGG	1 cut(s)	382
XbaI	TCTAGA	1 cut(s)	83
XspI	CTAG	2 cut(s)	84, 391

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.