FvH4_5g30860

Aminotransferase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
Physical Location & Seq
Forward (+)
21721267 .. 21726470
5204 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g30860.t1

Sequence Viewer

Length: 1251 bp
ATGAGAGCCGAAAAGGAGCGACTTGGTTTCCGTACAAAGGTACCTCGCAGTGTAAACATGGAGAAATTGCGGAATGGTTATTTGTTTCCTGAGATATCAAAGCTTGAGCTTCAACACACTGAGAAGTACCCAGATGCAAAATTAATAAGCCTTGGAATTGGTGATACGACAGAACCGCTACCAGAAATCATAACCTCAAGCATGGCTAATTATGCACATGCCCTTTCAACTGCTGATGGTTATACAGGGTACGGACCGGAGCAAGGCAACAAGGCATTGCGGGAGGCAATTGCAAAAGTATTCTATAAAGATCTACCAGTAATAGACACAGAAGTTTTTGTATCAGATGGTGCTCAGTGTGATATTACTCGCCTTCAGCTGCTTCTCGGTTCAAATGTGACAATTGCTGTGCAAGATCCATCCTTTCCAGCTTATATAGACTCGAGTGTCATAATAGGGCAGGCTGGTGAGATCAAAGATGAAGCTGGGAGGTATAGGAGCATTGAATACATGAACTGCAGCCCACACAATAATTTTTTTCCTAACTTATCAACCACTTCAAGAGCAGATATTATATTCTTTTGCTCTCCAAACAATCCAACTGGTCATGCAGCAACAAGGAAGCAATTAGAGCAACTGGTAGAATTTGCAAGACAGAATGGATCAATTATTATATATGACTCTGCCTATTCATCTTATATCAGAGATGATAGTCCTCGATCAATATACGAAATTCCTGGTGCCAGAGAGGTTGCTATTGAAATTTCATCATTCTCCAAATTTGCTGGGTTCACTGGCATCCGTCTAGGTTGGACAGTTGTCCCTGAGGAACTCCTATACTCCAATGGTTTTCCTGTGATACATGACTTCAATCGCATTGTGTGCACATGCTTTAATGGAGCATCTAATATTGCTCAAGCTGGTGGATTAGCATGTCTTTCCCCAGAAGGTATCCAGGCTGTGCATTCTATGGTTGACTACTACATGGAGAATGCAAAGATATTGGTTGAGACATTTGCTTCTCTTGGTTACCAAGTATATGGTGGTGCAAATGCTCCATACGTTTGGGTGCATTTTCCTGGCTCAAGTTCTTGGGATGTATTCACTGAGATTCTTGAAAAAACGCACATCCTTACAGTTCCAGGTTCTGGATTTGGTCCAGCTGGTGAAGGGTGCCTGAGAATTAGTGCTTTTGGCCACAGAGAGAGTATCCGAGAGGCCTCACGTAGGCTTAGAACCCTATTTCAATAA

Protein Analysis

417

Amino Acids

45.93

Weight (kDa)

5.57

Isoelectric Point (pI)

49.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aminotran_1_2 PF00155 47 - 410 1.4e-39 Aminotransferase class I and II
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 446
Acc65I GGTACC 1 cut(s) 40
AccB1I GGYRCC 3 cut(s) 40, 740, 1173
AccB7I CCANNNNNTGG 1 cut(s) 1148
AciI CCGC 3 cut(s) 70, 176, 280
AclWI GGATC 2 cut(s) 410, 670
AcoI YGGCCR 1 cut(s) 1195
AcsI RAATTY 4 cut(s) 644, 732, 762, 779
AcuI CTGAAG 1 cut(s) 359
AfaI GTAC 4 cut(s) 34, 42, 128, 251
AfiI CCNNNNNNNGG 4 cut(s) 37, 263, 1148, 1227
AgsI TTSAA 9 cut(s) 113, 228, 393, 506, 561, 761, 871, 1118, 1247
AjnI CCWGG 4 cut(s) 736, 954, 1078, 1141
AluBI AGCT 7 cut(s) 103, 109, 379, 431, 485, 920, 1163
AluI AGCT 7 cut(s) 103, 109, 379, 431, 485, 920, 1163
Alw21I GWGCWC 2 cut(s) 355, 887
Alw26I GTCTC 1 cut(s) 1004
Alw44I GTGCAC 1 cut(s) 883
AlwI GGATC 2 cut(s) 410, 670
AlwNI CAGNNNCTG 1 cut(s) 1148
Ama87I CYCGRG 1 cut(s) 442
AoxI GGCC 2 cut(s) 1195, 1218
ApaLI GTGCAC 1 cut(s) 883
ApeKI GCWGC 3 cut(s) 379, 519, 611
ApoI RAATTY 4 cut(s) 644, 732, 762, 779
AseI ATTAAT 1 cut(s) 143
Asp718I GGTACC 1 cut(s) 40
AspS9I GGNCC 2 cut(s) 254, 1157
AsuHPI GGTGA 3 cut(s) 173, 479, 1178
AvaI CYCGRG 1 cut(s) 442
AvaII GGWCC 2 cut(s) 254, 1157
AxyI CCTNAGG 1 cut(s) 825
BaeGI GKGCMC 1 cut(s) 887
BaeI ACNNNNGTAYC 2 cut(s) 24, 57
BalI TGGCCA 1 cut(s) 1197
BanI GGYRCC 3 cut(s) 40, 740, 1173
Bbv12I GWGCWC 2 cut(s) 355, 887
BbvI GCAGC 3 cut(s) 366, 531, 623
BccI CCATC 3 cut(s) 230, 341, 427
BciT130I CCWGG 4 cut(s) 738, 956, 1080, 1143
BciVI GTATCC 2 cut(s) 962, 1220
BcoDI GTCTC 1 cut(s) 1004
BfaI CTAG 1 cut(s) 806
BfmI CTRYAG 1 cut(s) 517
BfuI GTATCC 2 cut(s) 962, 1220
BglII AGATCT 1 cut(s) 310
BisI GCNGC 3 cut(s) 380, 520, 612
BlsI GCNGC 3 cut(s) 381, 521, 613
Bme1390I CCNGG 4 cut(s) 738, 956, 1080, 1143
Bme18I GGWCC 2 cut(s) 254, 1157
BmeT110I CYCGRG 1 cut(s) 442
BmgT120I GGNCC 2 cut(s) 254, 1157
BmiI GGNNCC 3 cut(s) 42, 742, 1175
BmrFI CCNGG 4 cut(s) 738, 956, 1080, 1143
BmsI GCATC 3 cut(s) 124, 807, 911
BoxI GACNNNNGTC 1 cut(s) 818
BpuEI CTTGAG 4 cut(s) 125, 181, 900, 1069
BsaAI YACGTR 1 cut(s) 1226
BsaJI CCNNGG 1 cut(s) 151
BsaWI WCCGGW 1 cut(s) 256
Bsc4I CCNNNNNNNGG 4 cut(s) 37, 263, 1148, 1227
Bse1I ACTGG 4 cut(s) 317, 607, 642, 799
Bse21I CCTNAGG 1 cut(s) 825
Bse3DI GCAATG 1 cut(s) 275
BseBI CCWGG 4 cut(s) 738, 956, 1080, 1143
BseDI CCNNGG 1 cut(s) 151
BseGI GGATG 4 cut(s) 419, 798, 1102, 1128
BseLI CCNNNNNNNGG 4 cut(s) 37, 263, 1148, 1227
BseMI GCAATG 1 cut(s) 275
BseMII CTCAG 6 cut(s) 81, 111, 368, 816, 1098, 1169
BseNI ACTGG 4 cut(s) 317, 607, 642, 799
BseSI GKGCMC 1 cut(s) 887
BseXI GCAGC 3 cut(s) 366, 531, 623
BseYI CCCAGC 2 cut(s) 485, 785
BshFI GGCC 2 cut(s) 1197, 1220
BshNI GGYRCC 3 cut(s) 40, 740, 1173
BsiHKAI GWGCWC 2 cut(s) 355, 887
BsiHKCI CYCGRG 1 cut(s) 442
BsiSI CCGG 1 cut(s) 257
BslFI GGGAC 1 cut(s) 806
BslI CCNNNNNNNGG 4 cut(s) 37, 263, 1148, 1227
BsmAI GTCTC 1 cut(s) 1004
BsmFI GGGAC 1 cut(s) 806
BsmI GAATGC 2 cut(s) 964, 997
BsnI GGCC 2 cut(s) 1197, 1220
BsoBI CYCGRG 1 cut(s) 442
Bsp1286I GDGCHC 2 cut(s) 355, 887
Bsp143I GATC 5 cut(s) 310, 415, 471, 662, 719
BspACI CCGC 3 cut(s) 70, 176, 280
BspANI GGCC 2 cut(s) 1197, 1220
BspCNI CTCAG 6 cut(s) 82, 112, 367, 817, 1099, 1170
BspLI GGNNCC 3 cut(s) 42, 742, 1175
BspMAI CTGCAG 1 cut(s) 521
BspPI GGATC 2 cut(s) 410, 670
BspT107I GGYRCC 3 cut(s) 40, 740, 1173
BsrDI GCAATG 1 cut(s) 275
BsrI ACTGG 4 cut(s) 317, 607, 642, 799
BssECI CCNNGG 1 cut(s) 151
BssMI GATC 5 cut(s) 310, 415, 471, 662, 719
BssT1I CCWWGG 1 cut(s) 151
Bst2UI CCWGG 4 cut(s) 738, 956, 1080, 1143
Bst4CI ACNGT 2 cut(s) 817, 1138
BstAPI GCANNNNNTGC 1 cut(s) 882
BstBAI YACGTR 1 cut(s) 1226
BstC8I GCNNGC 1 cut(s) 462
BstDEI CTNAG 7 cut(s) 90, 120, 354, 825, 1107, 1178, 1232
BstEII GGTNACC 1 cut(s) 1028
BstENI CCTNNNNNAGG 1 cut(s) 1225
BstF5I GGATG 4 cut(s) 419, 798, 1102, 1128
BstKTI GATC 5 cut(s) 313, 418, 474, 665, 722
BstMAI GTCTC 1 cut(s) 1004
BstMBI GATC 5 cut(s) 310, 415, 471, 662, 719
BstMWI GCNNNNNNNGC 3 cut(s) 212, 631, 882
BstNI CCWGG 4 cut(s) 738, 956, 1080, 1143
BstNSI RCATGY 3 cut(s) 221, 891, 936
BstPAI GACNNNNGTC 1 cut(s) 818
BstPI GGTNACC 1 cut(s) 1028
BstSCI CCNGG 4 cut(s) 736, 954, 1078, 1141
BstSFI CTRYAG 1 cut(s) 517
BstSLI GKGCMC 1 cut(s) 887
BstV1I GCAGC 3 cut(s) 366, 531, 623
BstX2I RGATCY 2 cut(s) 310, 415
BstXI CCANNNNNNTGG 2 cut(s) 1040, 1065
BstYI RGATCY 2 cut(s) 310, 415
Bsu36I CCTNAGG 1 cut(s) 825
BsuI GTATCC 2 cut(s) 962, 1220
BsuRI GGCC 2 cut(s) 1197, 1220
BtsCI GGATG 4 cut(s) 419, 798, 1102, 1128
BtsI GCAGTG 1 cut(s) 55
BtsIMutI CAGTG 5 cut(s) 55, 117, 362, 792, 1104
Cac8I GCNNGC 1 cut(s) 462
CaiI CAGNNNCTG 1 cut(s) 1148
Cfr13I GGNCC 2 cut(s) 254, 1157
CpoI CGGWCCG 1 cut(s) 254
Csp6I GTAC 4 cut(s) 33, 41, 127, 250
CspI CGGWCCG 1 cut(s) 254
CviAII CATG 9 cut(s) 58, 202, 218, 511, 608, 863, 888, 933, 985
CviQI GTAC 4 cut(s) 33, 41, 127, 250
DdeI CTNAG 7 cut(s) 90, 120, 354, 825, 1107, 1178, 1232
DpnI GATC 5 cut(s) 312, 417, 473, 664, 721
DpnII GATC 5 cut(s) 310, 415, 471, 662, 719
DrdI GACNNNNNNGTC 1 cut(s) 446
DseDI GACNNNNNNGTC 1 cut(s) 446
EaeI YGGCCR 1 cut(s) 1195
Eco130I CCWWGG 1 cut(s) 151
Eco147I AGGCCT 1 cut(s) 1220
Eco32I GATATC 1 cut(s) 96
Eco47I GGWCC 2 cut(s) 254, 1157
Eco57I CTGAAG 1 cut(s) 359
Eco81I CCTNAGG 1 cut(s) 825
Eco88I CYCGRG 1 cut(s) 442
Eco91I GGTNACC 1 cut(s) 1028
EcoNI CCTNNNNNAGG 1 cut(s) 1225
EcoO65I GGTNACC 1 cut(s) 1028
EcoRII CCWGG 4 cut(s) 736, 954, 1078, 1141
EcoRV GATATC 1 cut(s) 96
EcoT14I CCWWGG 1 cut(s) 151
ErhI CCWWGG 1 cut(s) 151
FaeI CATG 9 cut(s) 61, 205, 221, 514, 611, 866, 891, 936, 988
FaqI GGGAC 1 cut(s) 806
FatI CATG 9 cut(s) 57, 201, 217, 510, 607, 862, 887, 932, 984
FauI CCCGC 1 cut(s) 273
Fnu4HI GCNGC 3 cut(s) 380, 520, 612
FokI GGATG 4 cut(s) 406, 785, 1109, 1115
Fsp4HI GCNGC 3 cut(s) 380, 520, 612
FspBI CTAG 1 cut(s) 806
GluI GCNGC 3 cut(s) 380, 520, 612
GsaI CCCAGC 2 cut(s) 489, 789
HaeIII GGCC 2 cut(s) 1197, 1220
HapII CCGG 1 cut(s) 257
Hin1II CATG 9 cut(s) 61, 205, 221, 514, 611, 866, 891, 936, 988
HincII GTYRAC 1 cut(s) 976
HindII GTYRAC 1 cut(s) 976
HindIII AAGCTT 1 cut(s) 101
HinfI GANTC 3 cut(s) 440, 680, 1111
HpaII CCGG 1 cut(s) 257
HphI GGTGA 3 cut(s) 173, 479, 1178
Hpy166II GTNNAC 4 cut(s) 55, 792, 885, 976
Hpy188I TCNGA 3 cut(s) 346, 704, 1214
Hpy188III TCNNGA 4 cut(s) 89, 561, 1115, 1149
Hpy8I GTNNAC 4 cut(s) 55, 792, 885, 976
HpyAV CCTTC 3 cut(s) 383, 941, 1163
HpyCH4III ACNGT 2 cut(s) 817, 1138
HpyCH4IV ACGT 2 cut(s) 1062, 1225
HpyF10VI GCNNNNNNNGC 3 cut(s) 212, 631, 882
HpyF3I CTNAG 7 cut(s) 90, 120, 354, 825, 1107, 1178, 1232
HpySE526I ACGT 2 cut(s) 1062, 1225
Hsp92II CATG 9 cut(s) 61, 205, 221, 514, 611, 866, 891, 936, 988
KpnI GGTACC 1 cut(s) 44
Kzo9I GATC 5 cut(s) 310, 415, 471, 662, 719
LmnI GCTCC 5 cut(s) 16, 259, 498, 899, 1060
Lsp1109I GCAGC 3 cut(s) 366, 531, 623
LweI GCATC 3 cut(s) 124, 807, 911
MaeI CTAG 1 cut(s) 806
MaeII ACGT 2 cut(s) 1062, 1225
MaeIII GTNAC 2 cut(s) 397, 1028
MalI GATC 5 cut(s) 312, 417, 473, 664, 721
MboI GATC 5 cut(s) 310, 415, 471, 662, 719
MfeI CAATTG 2 cut(s) 288, 402
MflI RGATCY 2 cut(s) 310, 415
MhlI GDGCHC 2 cut(s) 355, 887
MlsI TGGCCA 1 cut(s) 1197
MluNI TGGCCA 1 cut(s) 1197
MlyI GAGTC 2 cut(s) 434, 674
MmeI TCCRAC 2 cut(s) 623, 791
MnlI CCTC 9 cut(s) 54, 205, 277, 483, 726, 742, 820, 1210, 1231
Mox20I TGGCCA 1 cut(s) 1197
MscI TGGCCA 1 cut(s) 1197
MseI TTAA 2 cut(s) 143, 894
Msp20I TGGCCA 1 cut(s) 1197
MspA1I CMGCKG 2 cut(s) 379, 1163
MspI CCGG 1 cut(s) 257
MspR9I CCNGG 4 cut(s) 738, 956, 1080, 1143
MunI CAATTG 2 cut(s) 288, 402
Mva1269I GAATGC 2 cut(s) 964, 997
MvaI CCWGG 4 cut(s) 738, 956, 1080, 1143
MwoI GCNNNNNNNGC 3 cut(s) 212, 631, 882
NdeII GATC 5 cut(s) 310, 415, 471, 662, 719
NlaIII CATG 9 cut(s) 61, 205, 221, 514, 611, 866, 891, 936, 988
NlaIV GGNNCC 3 cut(s) 42, 742, 1175
NmuCI GTSAC 1 cut(s) 397
NspI RCATGY 3 cut(s) 221, 891, 936
PaeR7I CTCGAG 1 cut(s) 442
PceI AGGCCT 1 cut(s) 1220
PctI GAATGC 2 cut(s) 964, 997
PfeI GAWTC 1 cut(s) 1111
PflMI CCANNNNNTGG 1 cut(s) 1148
PkrI GCNGC 3 cut(s) 381, 521, 613
PleI GAGTC 2 cut(s) 434, 674
PpsI GAGTC 2 cut(s) 434, 674
Ppu21I YACGTR 1 cut(s) 1226
PshAI GACNNNNGTC 1 cut(s) 818
PshBI ATTAAT 1 cut(s) 143
Psp6I CCWGG 4 cut(s) 736, 954, 1078, 1141
PspEI GGTNACC 1 cut(s) 1028
PspFI CCCAGC 2 cut(s) 485, 785
PspGI CCWGG 4 cut(s) 736, 954, 1078, 1141
PspN4I GGNNCC 3 cut(s) 42, 742, 1175
PspPI GGNCC 2 cut(s) 254, 1157
PspXI VCTCGAGB 1 cut(s) 442
PstI CTGCAG 1 cut(s) 521
PstNI CAGNNNCTG 1 cut(s) 1148
PsuI RGATCY 2 cut(s) 310, 415
PvuII CAGCTG 2 cut(s) 379, 1163
RsaI GTAC 4 cut(s) 34, 42, 128, 251
RsaNI GTAC 4 cut(s) 33, 41, 127, 250
Rsr2I CGGWCCG 1 cut(s) 254
RsrII CGGWCCG 1 cut(s) 254
SaqAI TTAA 2 cut(s) 143, 894
SatI GCNGC 3 cut(s) 380, 520, 612
Sau3AI GATC 5 cut(s) 310, 415, 471, 662, 719
Sau96I GGNCC 2 cut(s) 254, 1157
SchI GAGTC 2 cut(s) 434, 674
ScrFI CCNGG 4 cut(s) 738, 956, 1080, 1143
SduI GDGCHC 2 cut(s) 355, 887
SfaNI GCATC 3 cut(s) 124, 807, 911
SfcI CTRYAG 1 cut(s) 517
Sfr274I CTCGAG 1 cut(s) 442
SinI GGWCC 2 cut(s) 254, 1157
SlaI CTCGAG 1 cut(s) 442
SmlI CTYRAG 5 cut(s) 104, 196, 442, 915, 1084
SmoI CTYRAG 5 cut(s) 104, 196, 442, 915, 1084
SseBI AGGCCT 1 cut(s) 1220
SsiI CCGC 3 cut(s) 70, 176, 280
SspI AATATT 1 cut(s) 910
SspMI CTAG 1 cut(s) 806
StuI AGGCCT 1 cut(s) 1220
StyD4I CCNGG 4 cut(s) 736, 954, 1078, 1141
StyI CCWWGG 1 cut(s) 151
TaaI ACNGT 2 cut(s) 817, 1138
TaiI ACGT 2 cut(s) 1065, 1228
TaqI TCGA 2 cut(s) 443, 718
TfiI GAWTC 1 cut(s) 1111
Tru1I TTAA 2 cut(s) 143, 894
Tru9I TTAA 2 cut(s) 143, 894
TscAI CASTG 5 cut(s) 55, 124, 362, 799, 1111
TseFI GTSAC 1 cut(s) 397
TseI GCWGC 3 cut(s) 379, 519, 611
Tsp45I GTSAC 1 cut(s) 397
TspDTI ATGAA 4 cut(s) 495, 527, 681, 756
TspGWI ACGGA 3 cut(s) 20, 267, 791
TspRI CASTG 5 cut(s) 55, 124, 362, 799, 1111
Van91I CCANNNNNTGG 1 cut(s) 1148
VneI GTGCAC 1 cut(s) 883
VpaK11BI GGWCC 2 cut(s) 254, 1157
VspI ATTAAT 1 cut(s) 143
XagI CCTNNNNNAGG 1 cut(s) 1225
XapI RAATTY 4 cut(s) 644, 732, 762, 779
XceI RCATGY 3 cut(s) 221, 891, 936
XcmI CCANNNNNNNNNTGG 1 cut(s) 1040
XhoI CTCGAG 1 cut(s) 442
XspI CTAG 1 cut(s) 806
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.