RchiOBHm_Chr7g0240251

Aminotransferase class I and II

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
Physical Location & Seq
Reverse (-)
66213695 .. 66218382
4688 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ21534

Sequence Viewer

Length: 1389 bp
ATGGAGAACTTGCAAAACGAATATTTGTTTCCAGAGATATTCATGCGCGAGTTTCTGCATACTCAGAAGTACCCACATGCAAGAGTAATTAGACTTGGTATAGGTAATACTACAGAACCTATACCAGACATCATCACATCTGCTATGGCTGAGGAGAGTAAAGGTGGGCTACTAACAGTAAATCTTGCCGAGGAAAGTGGAAGAAGGAATTTAAATGAAACGCATCTAACAGTAAACAAAGGGATAATGGGAGTTGATCAAACTTATTATGCAAATAGAGATGACATGAGAGCCTCTCTCTTCACCATGGAGACAGAAAGTAGATCCACACAGAAACATGCACATGCTCTATCAACAGTTGAAGGTTACAGAGGGTACGGAGCTGAGCAAGGCCACATGGCATTGAGAATGTCAATTGCACAAAGATTCTACAAGAATATGGGCATAGAAGGCAATGAGGTGTTTGTATCAGATGGTGCCCAATGTGACATTTCTCGCCTTCAAATGCTTTTCGGTTCTAACGTGACAGTAGCTGTGCAAGACCCTTCTTTTCCGGCATACATAGATTCTAGTGTCATTGCTGGTCGAGCTGGCAACTTTCAGGAGGAAACTGGGAAGTATAAGAACATTGTCTACCTCAATTGCAGACCTGAGAATAATTTTTTTCCTGACTTATCAACTGCTTCAAGGGCGGATCTCATATTTTTCTGCTCTCCGAACAATCCAACTGGAAATGCTGCATCATGGCATCAACTAAAGCAACTGGTGGAGTTTGCTAAAGCAAATGGATCAATCATAGTTTATGACTCCTCATATGCTGCTTATATATCAGATGGAAGCCCAAGATCAATTTACGAAATTCCTGGTGCCAGAGAGGTTGCAATTGAAATATCATCCTTCTCCAAATTTGCTGGGTTCACAGGAGTCCGACTTGGTTGGACGGTTGTCCCTGAAGAGTTGTTGTATGCAAATGGATTTCCGGTCATAAAAGATTATAACCGCATAGTGTGCACCTGCTTCAATGGTGCATCAAATATAGCTCAGGCTGGAGGGCTAGCATGCCTTTCTGCAGAAGGTTATCAGGCTATAACAAATGTGGTTGACTACTACAAGGAGAATGCAAAAATCATTATCGACACATTCAGAGCACTTGGGTTGAAGGTGTATGGAGGCAAAAATGCTCCTTATATATGGGTACATTTTCCAGGGTTGAGTTCATGGGATGTGTTCAATCAAATTCTTGAAAAGACACACATAGTGACCATACCAGGAAAGGGATTTGGTCCTGCAGGTGAAGGGTATATCAGAGTTGGTGCTTTTGGCCACAGAGAAACCATATTGGAAGCTTCAGCAAGGCTAAAGAATTTTTTTGTAACTGATAATATTTGA

Protein Analysis

462

Amino Acids

51.13

Weight (kDa)

5.86

Isoelectric Point (pI)

36.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aminotran_1_2 PF00155 118 - 449 8.2e-32 Aminotransferase class I and II
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 996
AarI CACCTGC 2 cut(s) 1022, 1280
Acc36I ACCTGC 2 cut(s) 1022, 1280
AccB1I GGYRCC 2 cut(s) 476, 866
AccI GTMKAC 1 cut(s) 633
AccII CGCG 1 cut(s) 48
AciI CCGC 2 cut(s) 692, 1000
AclWI GGATC 3 cut(s) 318, 702, 796
AcoI YGGCCR 1 cut(s) 1321
AcsI RAATTY 5 cut(s) 208, 858, 905, 1236, 1363
AcuI CTGAAG 2 cut(s) 972, 1332
AdeI CACNNNGTG 1 cut(s) 1258
AfaI GTAC 3 cut(s) 71, 377, 1197
AfiI CCNNNNNNNGG 1 cut(s) 1274
AgsI TTSAA 8 cut(s) 362, 503, 687, 887, 1021, 1159, 1231, 1244
AjnI CCWGG 3 cut(s) 862, 1204, 1267
AluBI AGCT 5 cut(s) 383, 533, 590, 1040, 1346
AluI AGCT 5 cut(s) 383, 533, 590, 1040, 1346
Alw21I GWGCWC 2 cut(s) 1013, 1150
Alw26I GTCTC 1 cut(s) 305
Alw44I GTGCAC 1 cut(s) 1009
AlwI GGATC 3 cut(s) 318, 702, 796
AlwNI CAGNNNCTG 1 cut(s) 533
AoxI GGCC 2 cut(s) 391, 1321
ApaLI GTGCAC 1 cut(s) 1009
ApeKI GCWGC 2 cut(s) 737, 818
ApoI RAATTY 5 cut(s) 208, 858, 905, 1236, 1363
AspLEI GCGC 1 cut(s) 48
AspS9I GGNCC 1 cut(s) 1283
AsuHPI GGTGA 2 cut(s) 295, 1304
AsuNHI GCTAGC 1 cut(s) 1054
AvaII GGWCC 1 cut(s) 1283
BaeGI GKGCMC 2 cut(s) 481, 1013
BalI TGGCCA 1 cut(s) 1323
BanI GGYRCC 2 cut(s) 476, 866
Bbv12I GWGCWC 2 cut(s) 1013, 1150
BbvCI CCTCAGC 1 cut(s) 150
BbvI GCAGC 2 cut(s) 724, 805
BccI CCATC 2 cut(s) 467, 827
BciT130I CCWGG 3 cut(s) 864, 1206, 1269
BclI TGATCA 1 cut(s) 256
BcoDI GTCTC 1 cut(s) 305
BfaI CTAG 2 cut(s) 570, 1055
BfmI CTRYAG 3 cut(s) 111, 1068, 1287
BfuAI ACCTGC 2 cut(s) 1022, 1280
BisI GCNGC 2 cut(s) 738, 819
BlpI GCTNAGC 1 cut(s) 384
BlsI GCNGC 2 cut(s) 739, 820
Bme1390I CCNGG 3 cut(s) 864, 1206, 1269
Bme18I GGWCC 1 cut(s) 1283
BmgT120I GGNCC 1 cut(s) 1283
BmiI GGNNCC 2 cut(s) 478, 868
BmrFI CCNGG 3 cut(s) 864, 1206, 1269
BmrI ACTGGG 1 cut(s) 621
BmsI GCATC 4 cut(s) 232, 749, 757, 1037
BmtI GCTAGC 1 cut(s) 1058
BmuI ACTGGG 1 cut(s) 621
BoxI GACNNNNGTC 1 cut(s) 944
BplI GAGNNNNNCTC 4 cut(s) 280, 312, 282, 314
BpmI CTGGAG 1 cut(s) 1068
Bpu10I CCTNAGC 2 cut(s) 150, 1041
Bpu1102I GCTNAGC 1 cut(s) 384
BsaJI CCNNGG 3 cut(s) 189, 306, 1205
BsaWI WCCGGW 1 cut(s) 979
Bsc4I CCNNNNNNNGG 1 cut(s) 1274
Bse1I ACTGG 3 cut(s) 616, 733, 768
Bse3DI GCAATG 2 cut(s) 460, 576
BseBI CCWGG 3 cut(s) 864, 1206, 1269
BseDI CCNNGG 3 cut(s) 189, 306, 1205
BseGI GGATG 2 cut(s) 893, 1228
BseLI CCNNNNNNNGG 1 cut(s) 1274
BseMI GCAATG 2 cut(s) 460, 576
BseMII CTCAG 5 cut(s) 77, 141, 375, 642, 1055
BseNI ACTGG 3 cut(s) 616, 733, 768
BseRI GAGGAG 2 cut(s) 167, 799
BseSI GKGCMC 2 cut(s) 481, 1013
BseXI GCAGC 2 cut(s) 724, 805
BseYI CCCAGC 1 cut(s) 911
Bsh1236I CGCG 1 cut(s) 48
BshFI GGCC 2 cut(s) 393, 1323
BshNI GGYRCC 2 cut(s) 476, 866
BsiHKAI GWGCWC 2 cut(s) 1013, 1150
BsiSI CCGG 2 cut(s) 554, 980
BslFI GGGAC 1 cut(s) 932
BslI CCNNNNNNNGG 1 cut(s) 1274
BsmAI GTCTC 1 cut(s) 305
BsmFI GGGAC 1 cut(s) 932
BsmI GAATGC 1 cut(s) 1123
BsnI GGCC 2 cut(s) 393, 1323
Bsp1286I GDGCHC 3 cut(s) 481, 1013, 1150
Bsp143I GATC 5 cut(s) 256, 323, 694, 788, 845
Bsp1720I GCTNAGC 1 cut(s) 384
Bsp19I CCATGG 1 cut(s) 306
BspACI CCGC 2 cut(s) 692, 1000
BspANI GGCC 2 cut(s) 393, 1323
BspCNI CTCAG 5 cut(s) 76, 142, 376, 643, 1054
BspFNI CGCG 1 cut(s) 48
BspLI GGNNCC 2 cut(s) 478, 868
BspMAI CTGCAG 2 cut(s) 1072, 1291
BspMI ACCTGC 2 cut(s) 1022, 1280
BspOI GCTAGC 1 cut(s) 1058
BspPI GGATC 3 cut(s) 318, 702, 796
BspT107I GGYRCC 2 cut(s) 476, 866
BsrDI GCAATG 2 cut(s) 460, 576
BsrI ACTGG 3 cut(s) 616, 733, 768
BssECI CCNNGG 3 cut(s) 189, 306, 1205
BssMI GATC 5 cut(s) 256, 323, 694, 788, 845
BssT1I CCWWGG 1 cut(s) 306
Bst2UI CCWGG 3 cut(s) 864, 1206, 1269
Bst4CI ACNGT 5 cut(s) 178, 232, 358, 529, 943
Bst6I CTCTTC 2 cut(s) 305, 948
BstAPI GCANNNNNTGC 1 cut(s) 1008
BstC8I GCNNGC 3 cut(s) 592, 1056, 1060
BstDEI CTNAG 5 cut(s) 63, 150, 384, 651, 1041
BstDSI CCRYGG 1 cut(s) 306
BstF5I GGATG 2 cut(s) 893, 1228
BstFNI CGCG 1 cut(s) 48
BstHHI GCGC 1 cut(s) 48
BstKTI GATC 5 cut(s) 259, 326, 697, 791, 848
BstMAI GTCTC 1 cut(s) 305
BstMBI GATC 5 cut(s) 256, 323, 694, 788, 845
BstMWI GCNNNNNNNGC 4 cut(s) 450, 587, 689, 1008
BstNI CCWGG 3 cut(s) 864, 1206, 1269
BstNSI RCATGY 4 cut(s) 80, 341, 347, 1062
BstPAI GACNNNNGTC 1 cut(s) 944
BstSCI CCNGG 3 cut(s) 862, 1204, 1267
BstSFI CTRYAG 3 cut(s) 111, 1068, 1287
BstSLI GKGCMC 2 cut(s) 481, 1013
BstUI CGCG 1 cut(s) 48
BstV1I GCAGC 2 cut(s) 724, 805
BstX2I RGATCY 2 cut(s) 323, 694
BstYI RGATCY 2 cut(s) 323, 694
BsuRI GGCC 2 cut(s) 393, 1323
BtgI CCRYGG 1 cut(s) 306
BtsCI GGATG 2 cut(s) 893, 1228
BveI ACCTGC 2 cut(s) 1022, 1280
Cac8I GCNNGC 3 cut(s) 592, 1056, 1060
CaiI CAGNNNCTG 1 cut(s) 533
CfoI GCGC 1 cut(s) 48
Cfr13I GGNCC 1 cut(s) 1283
Csp6I GTAC 3 cut(s) 70, 376, 1196
CviQI GTAC 3 cut(s) 70, 376, 1196
DdeI CTNAG 5 cut(s) 63, 150, 384, 651, 1041
DpnI GATC 5 cut(s) 258, 325, 696, 790, 847
DpnII GATC 5 cut(s) 256, 323, 694, 788, 845
DraI TTTAAA 1 cut(s) 213
DraIII CACNNNGTG 1 cut(s) 1258
EaeI YGGCCR 1 cut(s) 1321
Eam1104I CTCTTC 2 cut(s) 305, 948
EarI CTCTTC 2 cut(s) 305, 948
EciI GGCGGA 1 cut(s) 707
Eco130I CCWWGG 1 cut(s) 306
Eco47I GGWCC 1 cut(s) 1283
Eco57I CTGAAG 2 cut(s) 972, 1332
EcoRII CCWGG 3 cut(s) 862, 1204, 1267
EcoT14I CCWWGG 1 cut(s) 306
ErhI CCWWGG 1 cut(s) 306
FaqI GGGAC 1 cut(s) 932
FauNDI CATATG 1 cut(s) 814
FbaI TGATCA 1 cut(s) 256
FblI GTMKAC 1 cut(s) 633
Fnu4HI GCNGC 2 cut(s) 738, 819
FokI GGATG 2 cut(s) 880, 1235
Fsp4HI GCNGC 2 cut(s) 738, 819
FspBI CTAG 2 cut(s) 570, 1055
GlaI GCGC 1 cut(s) 47
GluI GCNGC 2 cut(s) 738, 819
GsaI CCCAGC 1 cut(s) 915
GsuI CTGGAG 1 cut(s) 1068
HaeIII GGCC 2 cut(s) 393, 1323
HapII CCGG 2 cut(s) 554, 980
HhaI GCGC 1 cut(s) 48
Hin6I GCGC 1 cut(s) 46
HinP1I GCGC 1 cut(s) 46
HincII GTYRAC 1 cut(s) 1102
HindII GTYRAC 1 cut(s) 1102
HindIII AAGCTT 1 cut(s) 1344
HinfI GANTC 4 cut(s) 426, 566, 806, 924
HpaII CCGG 2 cut(s) 554, 980
HphI GGTGA 2 cut(s) 295, 1304
Hpy166II GTNNAC 5 cut(s) 235, 634, 918, 1011, 1102
Hpy188I TCNGA 7 cut(s) 66, 472, 717, 832, 929, 1145, 1307
Hpy188III TCNNGA 4 cut(s) 32, 602, 668, 1241
Hpy8I GTNNAC 5 cut(s) 235, 634, 918, 1011, 1102
HpyAV CCTTC 9 cut(s) 198, 356, 443, 509, 555, 907, 1067, 1153, 1289
HpyCH4III ACNGT 5 cut(s) 178, 232, 358, 529, 943
HpyCH4IV ACGT 1 cut(s) 522
HpyF10VI GCNNNNNNNGC 4 cut(s) 450, 587, 689, 1008
HpyF3I CTNAG 5 cut(s) 63, 150, 384, 651, 1041
HpySE526I ACGT 1 cut(s) 522
HspAI GCGC 1 cut(s) 46
Ksp22I TGATCA 1 cut(s) 256
Kzo9I GATC 5 cut(s) 256, 323, 694, 788, 845
LmnI GCTCC 2 cut(s) 380, 1186
Lsp1109I GCAGC 2 cut(s) 724, 805
LweI GCATC 4 cut(s) 232, 749, 757, 1037
MaeI CTAG 2 cut(s) 570, 1055
MaeII ACGT 1 cut(s) 522
MaeIII GTNAC 5 cut(s) 365, 485, 523, 1258, 1372
MalI GATC 5 cut(s) 258, 325, 696, 790, 847
MboI GATC 5 cut(s) 256, 323, 694, 788, 845
MboII GAAGA 3 cut(s) 213, 292, 965
MfeI CAATTG 3 cut(s) 414, 640, 882
MflI RGATCY 2 cut(s) 323, 694
MhlI GDGCHC 3 cut(s) 481, 1013, 1150
MlsI TGGCCA 1 cut(s) 1323
MluNI TGGCCA 1 cut(s) 1323
MlyI GAGTC 2 cut(s) 800, 933
MmeI TCCRAC 3 cut(s) 749, 917, 952
Mox20I TGGCCA 1 cut(s) 1323
MscI TGGCCA 1 cut(s) 1323
MseI TTAA 1 cut(s) 212
MslI CAYNNNNRTG 1 cut(s) 342
Msp20I TGGCCA 1 cut(s) 1323
MspI CCGG 2 cut(s) 554, 980
MspR9I CCNGG 3 cut(s) 864, 1206, 1269
MunI CAATTG 3 cut(s) 414, 640, 882
Mva1269I GAATGC 1 cut(s) 1123
MvaI CCWGG 3 cut(s) 864, 1206, 1269
MvnI CGCG 1 cut(s) 48
MwoI GCNNNNNNNGC 4 cut(s) 450, 587, 689, 1008
NcoI CCATGG 1 cut(s) 306
NdeI CATATG 1 cut(s) 814
NdeII GATC 5 cut(s) 256, 323, 694, 788, 845
NheI GCTAGC 1 cut(s) 1054
NlaIV GGNNCC 2 cut(s) 478, 868
NmeAIII GCCGAG 1 cut(s) 214
NmuCI GTSAC 3 cut(s) 485, 523, 1258
NspI RCATGY 4 cut(s) 80, 341, 347, 1062
PaeI GCATGC 1 cut(s) 1062
PaqCI CACCTGC 2 cut(s) 1022, 1280
PcsI WCGNNNNNNNCGW 1 cut(s) 519
PctI GAATGC 1 cut(s) 1123
PfeI GAWTC 2 cut(s) 426, 566
PkrI GCNGC 2 cut(s) 739, 820
PleI GAGTC 2 cut(s) 800, 932
PpsI GAGTC 2 cut(s) 800, 932
PshAI GACNNNNGTC 1 cut(s) 944
PsiI TTATAA 1 cut(s) 996
Psp6I CCWGG 3 cut(s) 862, 1204, 1267
PspFI CCCAGC 1 cut(s) 911
PspGI CCWGG 3 cut(s) 862, 1204, 1267
PspN4I GGNNCC 2 cut(s) 478, 868
PspPI GGNCC 1 cut(s) 1283
PsrI GAACNNNNNNTAC 2 cut(s) 617, 649
PstI CTGCAG 2 cut(s) 1072, 1291
PstNI CAGNNNCTG 1 cut(s) 533
PsuI RGATCY 2 cut(s) 323, 694
RsaI GTAC 3 cut(s) 71, 377, 1197
RsaNI GTAC 3 cut(s) 70, 376, 1196
RseI CAYNNNNRTG 1 cut(s) 342
SaqAI TTAA 1 cut(s) 212
SatI GCNGC 2 cut(s) 738, 819
Sau3AI GATC 5 cut(s) 256, 323, 694, 788, 845
Sau96I GGNCC 1 cut(s) 1283
SbfI CCTGCAGG 1 cut(s) 1291
SchI GAGTC 2 cut(s) 800, 933
ScrFI CCNGG 3 cut(s) 864, 1206, 1269
SdaI CCTGCAGG 1 cut(s) 1291
SduI GDGCHC 3 cut(s) 481, 1013, 1150
SfaNI GCATC 4 cut(s) 232, 749, 757, 1037
SfcI CTRYAG 3 cut(s) 111, 1068, 1287
SinI GGWCC 1 cut(s) 1283
SmiI ATTTAAAT 1 cut(s) 213
SmiMI CAYNNNNRTG 1 cut(s) 342
SphI GCATGC 1 cut(s) 1062
Sse8387I CCTGCAGG 1 cut(s) 1291
SsiI CCGC 2 cut(s) 692, 1000
SspI AATATT 2 cut(s) 23, 1384
SspMI CTAG 2 cut(s) 570, 1055
StyD4I CCNGG 3 cut(s) 862, 1204, 1267
StyI CCWWGG 1 cut(s) 306
SwaI ATTTAAAT 1 cut(s) 213
TaaI ACNGT 5 cut(s) 178, 232, 358, 529, 943
TaiI ACGT 1 cut(s) 525
TaqI TCGA 2 cut(s) 586, 1134
TfiI GAWTC 2 cut(s) 426, 566
Tru1I TTAA 1 cut(s) 212
Tru9I TTAA 1 cut(s) 212
TseFI GTSAC 3 cut(s) 485, 523, 1258
TseI GCWGC 2 cut(s) 737, 818
Tsp45I GTSAC 3 cut(s) 485, 523, 1258
TspDTI ATGAA 3 cut(s) 31, 231, 1206
TspGWI ACGGA 1 cut(s) 393
VneI GTGCAC 1 cut(s) 1009
VpaK11BI GGWCC 1 cut(s) 1283
XapI RAATTY 5 cut(s) 208, 858, 905, 1236, 1363
XceI RCATGY 4 cut(s) 80, 341, 347, 1062
XmiI GTMKAC 1 cut(s) 633
XspI CTAG 2 cut(s) 570, 1055
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.