Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004200.1

Orthogroup ID

OG0003005

Physical Location & Seq

Genomic Coordinates Reverse (-)

36672 .. 40228

Gene Structure 3557 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004200.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1095 bp

atgtttaagcttcctactcttcggtcccatgaaaccatatggcagcctgtaattcatgccagcgtgagggccaaaaaggagcgacttggtttccgtacaaaggtgcctcgcagtgtaaacatggagaaattgcggaatggttatttgtttcctgagatttcaaagcttgagctccaacatgttgagaagtacccagatgccaaattgataagccttggaattggtgatacaacagaaccgctaccagaaatcataacctcaaccatggctaatgcttatatagactcaagtgtcataataggtcaggcaggtgagatcaaagatgaagctgggaggtataggagcattgaatacatgaactgcagccctcacaataatttttttccgaacttatcaactacttcaagagcagatattatattcttttgctctccaaacaatccaactggttatgcagcaacaaggaagcaattagagcaacttgtagagtttgcaaggcagaatggatcaattatcatatatgactctgcctattcatcttatatcagagatgatagtcctcggtcaatatacgatattcctggtgccagagaggttgctattgaaatttcatcattctccaaatttgctgggttcactggcatccgtctaggttggacggttgtccctgaggagctcttatactccaatggttttcctgttatatatgacttcaatcgtattgtgtgcacttgctttaatggagcatctaatattgctcaagctggtggattggcatgtctttctccagtaggtttccaggctgtgcattctatggttgactactacatggagaatgcaaagatattggtcgagacatttgcttctcttggttaccaagtatatggtggtgcaaatgctccctacatttgggtgcattttcctggctcaagttcttgggatgtattcactgagattcttgaaaaaacacacatccttacagttccaggttctggatttggtccagctggtgaagggtgtctcagaattagttcttttggccacagagagtgtatccgagaggcctcgcgtaggctcagaaccctatttcaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002376 GO:0003674 GO:0003824 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0007275 GO:0007568 GO:0008144 GO:0008150 GO:0008483 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009607 GO:0009617 GO:0009627 GO:0009719 GO:0009725 GO:0009735 GO:0009751 GO:0009814 GO:0009862 GO:0009863 GO:0009987 GO:0010033 GO:0010150 GO:0010285 GO:0014070 GO:0016740 GO:0016769 GO:0019842 GO:0023052 GO:0030170 GO:0032501 GO:0032502 GO:0032870 GO:0035690 GO:0036094 GO:0042221 GO:0042493 GO:0042742 GO:0043167 GO:0043168 GO:0043169 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0046677 GO:0046872 GO:0046914 GO:0048037 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050662 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0070279 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071407 GO:0071446 GO:0071495 GO:0090693 GO:0097159 GO:0098542 GO:0099402 GO:1901363 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko00300 ko01100 ko01110 ko01130 ko01230 map00300 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

Aminotran_1_2

Protein Analysis

364

Amino Acids

40.62

Weight (kDa)

6.72

Isoelectric Point (pI)

54.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003005)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G13810
fragaria_vesca	FvH4_5g30860 FvH4_5g30860 FvH4_5g38260 FvH4_5g38260 FvH4_5g38260 FvH4_5g38260 FvH4_5g38260
malus_domestica	MD08G1221500.v1.1 MD15G1412200.v1.1 MD15G1412400.v1.1
prunus_persica	Prupe.1G509100_v2.0.a1 Prupe.1G509100_v2.0.a1 Prupe.1G509500_v2.0.a1 Prupe.1G558600_v2.0.a1
pyrus_communis	pycom08g19210 pycom15g36710
rosa_chinensis	RchiOBHm_Chr7g0226031 RchiOBHm_Chr7g0240251
rosa_laevigata	RLG00000000691 RLG00000001773
rosa_multiflora	Rmu_sc0002676.1_g000021 Rmu_sc0004200.1_g000015
rosa_roxburghii	Rroxscaffold_3G00220280 Rroxscaffold_3G00233310
rosa_rugosa	Rorug07G0234200 Rorug07G0234300 Rorug07G0334400
rosa_samantha	Rh7AG369100 Rh7AG488400 Rh7BG368200 Rh7BG461300 Rh7CG387600 Rh7CG504500 Rh7DG379300 Rh7DG472600
rosa_wichuraiana	Rw0G020940 Rw7G040880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	299
AasI	GACNNNNNNGTC	1 cut(s)	290
Acc36I	ACCTGC	1 cut(s)	299
AccB1I	GGYRCC	2 cut(s)	103, 584
AccB7I	CCANNNNNTGG	1 cut(s)	992
AccII	CGCG	1 cut(s)	1069
AciI	CCGC	2 cut(s)	133, 239
AclWI	GGATC	1 cut(s)	514
AcoI	YGGCCR	1 cut(s)	1039
AcsI	RAATTY	2 cut(s)	606, 623
AfaI	GTAC	2 cut(s)	97, 191
AfiI	CCNNNNNNNGG	5 cut(s)	66, 100, 909, 992, 1071
AflIII	ACRYGT	1 cut(s)	178
AgsI	TTSAA	7 cut(s)	162, 350, 405, 605, 715, 962, 1091
AjnI	CCWGG	4 cut(s)	580, 798, 922, 985
AluBI	AGCT	7 cut(s)	10, 166, 172, 329, 676, 764, 1007
AluI	AGCT	7 cut(s)	10, 166, 172, 329, 676, 764, 1007
Alw21I	GWGCWC	3 cut(s)	174, 678, 731
Alw26I	GTCTC	2 cut(s)	848, 1025
Alw44I	GTGCAC	1 cut(s)	727
AlwI	GGATC	1 cut(s)	514
AlwNI	CAGNNNCTG	1 cut(s)	992
AoxI	GGCC	3 cut(s)	69, 1039, 1062
ApaLI	GTGCAC	1 cut(s)	727
ApeKI	GCWGC	3 cut(s)	43, 363, 455
ApoI	RAATTY	2 cut(s)	606, 623
Asp700I	GAANNNNTTC	1 cut(s)	1030
AspS9I	GGNCC	3 cut(s)	24, 69, 1001
AsuHPI	GGTGA	3 cut(s)	236, 323, 1022
AvaII	GGWCC	2 cut(s)	24, 1001
AxyI	CCTNAGG	1 cut(s)	669
BaeGI	GKGCMC	1 cut(s)	731
BalI	TGGCCA	1 cut(s)	1041
BanI	GGYRCC	2 cut(s)	103, 584
BanII	GRGCYC	2 cut(s)	174, 678
Bbv12I	GWGCWC	3 cut(s)	174, 678, 731
BbvI	GCAGC	3 cut(s)	55, 375, 467
BcgI	CGANNNNNNTGC	2 cut(s)	842, 876
BciT130I	CCWGG	4 cut(s)	582, 800, 924, 987
BciVI	GTATCC	1 cut(s)	1064
BcoDI	GTCTC	2 cut(s)	848, 1025
BfaI	CTAG	1 cut(s)	650
BfmI	CTRYAG	1 cut(s)	361
BfuAI	ACCTGC	1 cut(s)	299
BfuI	GTATCC	1 cut(s)	1064
BisI	GCNGC	3 cut(s)	44, 364, 456
BlsI	GCNGC	3 cut(s)	45, 365, 457
Bme1390I	CCNGG	4 cut(s)	582, 800, 924, 987
Bme18I	GGWCC	2 cut(s)	24, 1001
BmgT120I	GGNCC	3 cut(s)	24, 69, 1001
BmiI	GGNNCC	3 cut(s)	26, 105, 586
BmrFI	CCNGG	4 cut(s)	582, 800, 924, 987
BmsI	GCATC	3 cut(s)	187, 651, 755
BoxI	GACNNNNGTC	1 cut(s)	662
BpmI	CTGGAG	1 cut(s)	771
BpuEI	CTTGAG	4 cut(s)	188, 271, 744, 913
BsaJI	CCNNGG	3 cut(s)	214, 264, 560
Bsc4I	CCNNNNNNNGG	5 cut(s)	66, 100, 909, 992, 1071
Bse1I	ACTGG	3 cut(s)	451, 643, 788
Bse21I	CCTNAGG	1 cut(s)	669
BseBI	CCWGG	4 cut(s)	582, 800, 924, 987
BseDI	CCNNGG	3 cut(s)	214, 264, 560
BseGI	GGATG	3 cut(s)	642, 946, 972
BseLI	CCNNNNNNNGG	5 cut(s)	66, 100, 909, 992, 1071
BseMII	CTCAG	5 cut(s)	144, 660, 942, 1036, 1090
BseNI	ACTGG	3 cut(s)	451, 643, 788
BseRI	GAGGAG	1 cut(s)	686
BseSI	GKGCMC	1 cut(s)	731
BseXI	GCAGC	3 cut(s)	55, 375, 467
BseYI	CCCAGC	2 cut(s)	329, 629
Bsh1236I	CGCG	1 cut(s)	1069
BshFI	GGCC	3 cut(s)	71, 1041, 1064
BshNI	GGYRCC	2 cut(s)	103, 584
BsiHKAI	GWGCWC	3 cut(s)	174, 678, 731
BslFI	GGGAC	2 cut(s)	10, 650
BslI	CCNNNNNNNGG	5 cut(s)	66, 100, 909, 992, 1071
BsmAI	GTCTC	2 cut(s)	848, 1025
BsmFI	GGGAC	2 cut(s)	10, 650
BsmI	GAATGC	2 cut(s)	808, 841
BsnI	GGCC	3 cut(s)	71, 1041, 1064
Bsp1286I	GDGCHC	3 cut(s)	174, 678, 731
Bsp143I	GATC	2 cut(s)	315, 506
Bsp19I	CCATGG	1 cut(s)	264
BspACI	CCGC	2 cut(s)	133, 239
BspANI	GGCC	3 cut(s)	71, 1041, 1064
BspCNI	CTCAG	5 cut(s)	145, 661, 943, 1035, 1089
BspFNI	CGCG	1 cut(s)	1069
BspLI	GGNNCC	3 cut(s)	26, 105, 586
BspMAI	CTGCAG	1 cut(s)	365
BspMI	ACCTGC	1 cut(s)	299
BspPI	GGATC	1 cut(s)	514
BspT107I	GGYRCC	2 cut(s)	103, 584
BsrI	ACTGG	3 cut(s)	451, 643, 788
BssECI	CCNNGG	3 cut(s)	214, 264, 560
BssMI	GATC	2 cut(s)	315, 506
BssT1I	CCWWGG	2 cut(s)	214, 264
Bst2UI	CCWGG	4 cut(s)	582, 800, 924, 987
Bst4CI	ACNGT	2 cut(s)	661, 982
Bst6I	CTCTTC	1 cut(s)	24
BstC8I	GCNNGC	1 cut(s)	61
BstDEI	CTNAG	5 cut(s)	153, 669, 951, 1022, 1076
BstDSI	CCRYGG	1 cut(s)	264
BstEII	GGTNACC	1 cut(s)	872
BstENI	CCTNNNNNAGG	1 cut(s)	1069
BstF5I	GGATG	3 cut(s)	642, 946, 972
BstFNI	CGCG	1 cut(s)	1069
BstKTI	GATC	2 cut(s)	318, 509
BstMAI	GTCTC	2 cut(s)	848, 1025
BstMBI	GATC	2 cut(s)	315, 506
BstMWI	GCNNNNNNNGC	1 cut(s)	475
BstNI	CCWGG	4 cut(s)	582, 800, 924, 987
BstNSI	RCATGY	2 cut(s)	182, 780
BstPAI	GACNNNNGTC	1 cut(s)	662
BstPI	GGTNACC	1 cut(s)	872
BstSCI	CCNGG	4 cut(s)	580, 798, 922, 985
BstSFI	CTRYAG	1 cut(s)	361
BstSLI	GKGCMC	1 cut(s)	731
BstUI	CGCG	1 cut(s)	1069
BstV1I	GCAGC	3 cut(s)	55, 375, 467
BstXI	CCANNNNNNTGG	1 cut(s)	884
Bsu36I	CCTNAGG	1 cut(s)	669
BsuI	GTATCC	1 cut(s)	1064
BsuRI	GGCC	3 cut(s)	71, 1041, 1064
BtgI	CCRYGG	1 cut(s)	264
BtsCI	GGATG	3 cut(s)	642, 946, 972
BtsI	GCAGTG	1 cut(s)	118
BtsIMutI	CAGTG	3 cut(s)	118, 636, 948
BveI	ACCTGC	1 cut(s)	299
Cac8I	GCNNGC	1 cut(s)	61
CaiI	CAGNNNCTG	1 cut(s)	992
Cfr13I	GGNCC	3 cut(s)	24, 69, 1001
Csp6I	GTAC	2 cut(s)	96, 190
CviAII	CATG	8 cut(s)	29, 56, 121, 179, 265, 355, 777, 829
CviQI	GTAC	2 cut(s)	96, 190
DdeI	CTNAG	5 cut(s)	153, 669, 951, 1022, 1076
DpnI	GATC	2 cut(s)	317, 508
DpnII	GATC	2 cut(s)	315, 506
DrdI	GACNNNNNNGTC	1 cut(s)	290
DseDI	GACNNNNNNGTC	1 cut(s)	290
EaeI	YGGCCR	1 cut(s)	1039
Eam1104I	CTCTTC	1 cut(s)	24
EarI	CTCTTC	1 cut(s)	24
Ecl136II	GAGCTC	2 cut(s)	172, 676
Eco130I	CCWWGG	2 cut(s)	214, 264
Eco147I	AGGCCT	1 cut(s)	1064
Eco24I	GRGCYC	2 cut(s)	174, 678
Eco47I	GGWCC	2 cut(s)	24, 1001
Eco53kI	GAGCTC	2 cut(s)	172, 676
Eco81I	CCTNAGG	1 cut(s)	669
Eco91I	GGTNACC	1 cut(s)	872
EcoICRI	GAGCTC	2 cut(s)	172, 676
EcoNI	CCTNNNNNAGG	1 cut(s)	1069
EcoO65I	GGTNACC	1 cut(s)	872
EcoRII	CCWGG	4 cut(s)	580, 798, 922, 985
EcoT14I	CCWWGG	2 cut(s)	214, 264
EcoT38I	GRGCYC	2 cut(s)	174, 678
ErhI	CCWWGG	2 cut(s)	214, 264
FaeI	CATG	8 cut(s)	32, 59, 124, 182, 268, 358, 780, 832
FaqI	GGGAC	2 cut(s)	10, 650
FatI	CATG	8 cut(s)	28, 55, 120, 178, 264, 354, 776, 828
FauNDI	CATATG	1 cut(s)	38
Fnu4HI	GCNGC	3 cut(s)	44, 364, 456
FokI	GGATG	3 cut(s)	629, 953, 959
FriOI	GRGCYC	2 cut(s)	174, 678
Fsp4HI	GCNGC	3 cut(s)	44, 364, 456
FspBI	CTAG	1 cut(s)	650
GluI	GCNGC	3 cut(s)	44, 364, 456
GsaI	CCCAGC	2 cut(s)	333, 633
GsuI	CTGGAG	1 cut(s)	771
HaeIII	GGCC	3 cut(s)	71, 1041, 1064
Hin1II	CATG	8 cut(s)	32, 59, 124, 182, 268, 358, 780, 832
HincII	GTYRAC	1 cut(s)	820
HindII	GTYRAC	1 cut(s)	820
HindIII	AAGCTT	2 cut(s)	8, 164
HinfI	GANTC	3 cut(s)	284, 524, 955
HphI	GGTGA	3 cut(s)	236, 323, 1022
Hpy166II	GTNNAC	4 cut(s)	118, 636, 729, 820
Hpy188I	TCNGA	5 cut(s)	387, 548, 1025, 1058, 1079
Hpy188III	TCNNGA	5 cut(s)	152, 405, 853, 959, 993
Hpy8I	GTNNAC	4 cut(s)	118, 636, 729, 820
HpyAV	CCTTC	1 cut(s)	1007
HpyCH4III	ACNGT	2 cut(s)	661, 982
HpyCH4V	TGCA	8 cut(s)	363, 455, 494, 729, 808, 839, 893, 916
HpyF10VI	GCNNNNNNNGC	1 cut(s)	475
HpyF3I	CTNAG	5 cut(s)	153, 669, 951, 1022, 1076
Hsp92II	CATG	8 cut(s)	32, 59, 124, 182, 268, 358, 780, 832
Kzo9I	GATC	2 cut(s)	315, 506
LmnI	GCTCC	6 cut(s)	79, 177, 342, 673, 743, 904
Lsp1109I	GCAGC	3 cut(s)	55, 375, 467
LweI	GCATC	3 cut(s)	187, 651, 755
MaeI	CTAG	1 cut(s)	650
MaeIII	GTNAC	1 cut(s)	872
MalI	GATC	2 cut(s)	317, 508
MboI	GATC	2 cut(s)	315, 506
MboII	GAAGA	1 cut(s)	11
MhlI	GDGCHC	3 cut(s)	174, 678, 731
MlsI	TGGCCA	1 cut(s)	1041
MluNI	TGGCCA	1 cut(s)	1041
MlyI	GAGTC	2 cut(s)	278, 518
MmeI	TCCRAC	3 cut(s)	199, 467, 635
Mox20I	TGGCCA	1 cut(s)	1041
MroXI	GAANNNNTTC	1 cut(s)	1030
MscI	TGGCCA	1 cut(s)	1041
MseI	TTAA	2 cut(s)	6, 738
MslI	CAYNNNNRTG	1 cut(s)	911
Msp20I	TGGCCA	1 cut(s)	1041
MspA1I	CMGCKG	1 cut(s)	1007
MspR9I	CCNGG	4 cut(s)	582, 800, 924, 987
Mva1269I	GAATGC	2 cut(s)	808, 841
MvaI	CCWGG	4 cut(s)	582, 800, 924, 987
MvnI	CGCG	1 cut(s)	1069
MwoI	GCNNNNNNNGC	1 cut(s)	475
NcoI	CCATGG	1 cut(s)	264
NdeI	CATATG	1 cut(s)	38
NdeII	GATC	2 cut(s)	315, 506
NlaIII	CATG	8 cut(s)	32, 59, 124, 182, 268, 358, 780, 832
NlaIV	GGNNCC	3 cut(s)	26, 105, 586
NspI	RCATGY	2 cut(s)	182, 780
PaqCI	CACCTGC	1 cut(s)	299
PceI	AGGCCT	1 cut(s)	1064
PciI	ACATGT	1 cut(s)	178
PctI	GAATGC	2 cut(s)	808, 841
PdmI	GAANNNNTTC	1 cut(s)	1030
PfeI	GAWTC	1 cut(s)	955
PflMI	CCANNNNNTGG	1 cut(s)	992
PkrI	GCNGC	3 cut(s)	45, 365, 457
PleI	GAGTC	2 cut(s)	278, 518
PpsI	GAGTC	2 cut(s)	278, 518
PscI	ACATGT	1 cut(s)	178
PshAI	GACNNNNGTC	1 cut(s)	662
Psp124BI	GAGCTC	2 cut(s)	174, 678
Psp6I	CCWGG	4 cut(s)	580, 798, 922, 985
PspEI	GGTNACC	1 cut(s)	872
PspFI	CCCAGC	2 cut(s)	329, 629
PspGI	CCWGG	4 cut(s)	580, 798, 922, 985
PspN4I	GGNNCC	3 cut(s)	26, 105, 586
PspPI	GGNCC	3 cut(s)	24, 69, 1001
PstI	CTGCAG	1 cut(s)	365
PstNI	CAGNNNCTG	1 cut(s)	992
PvuII	CAGCTG	1 cut(s)	1007
RsaI	GTAC	2 cut(s)	97, 191
RsaNI	GTAC	2 cut(s)	96, 190
RseI	CAYNNNNRTG	1 cut(s)	911
SacI	GAGCTC	2 cut(s)	174, 678
SaqAI	TTAA	2 cut(s)	6, 738
SatI	GCNGC	3 cut(s)	44, 364, 456
Sau3AI	GATC	2 cut(s)	315, 506
Sau96I	GGNCC	3 cut(s)	24, 69, 1001
SchI	GAGTC	2 cut(s)	278, 518
ScrFI	CCNGG	4 cut(s)	582, 800, 924, 987
SduI	GDGCHC	3 cut(s)	174, 678, 731
SfaNI	GCATC	3 cut(s)	187, 651, 755
SfcI	CTRYAG	1 cut(s)	361
SinI	GGWCC	2 cut(s)	24, 1001
SmiMI	CAYNNNNRTG	1 cut(s)	911
SmlI	CTYRAG	4 cut(s)	167, 286, 759, 928
SmoI	CTYRAG	4 cut(s)	167, 286, 759, 928
SseBI	AGGCCT	1 cut(s)	1064
SsiI	CCGC	2 cut(s)	133, 239
SspI	AATATT	1 cut(s)	754
SspMI	CTAG	1 cut(s)	650
SstI	GAGCTC	2 cut(s)	174, 678
StuI	AGGCCT	1 cut(s)	1064
StyD4I	CCNGG	4 cut(s)	580, 798, 922, 985
StyI	CCWWGG	2 cut(s)	214, 264
TaaI	ACNGT	2 cut(s)	661, 982
TaqI	TCGA	1 cut(s)	852
TaqII	GACCGA	2 cut(s)	12, 552
TfiI	GAWTC	1 cut(s)	955
Tru1I	TTAA	2 cut(s)	6, 738
Tru9I	TTAA	2 cut(s)	6, 738
TscAI	CASTG	3 cut(s)	118, 643, 955
TseI	GCWGC	3 cut(s)	43, 363, 455
TspDTI	ATGAA	6 cut(s)	44, 45, 339, 371, 525, 600
TspGWI	ACGGA	2 cut(s)	83, 635
TspRI	CASTG	3 cut(s)	118, 643, 955
Van91I	CCANNNNNTGG	1 cut(s)	992
VneI	GTGCAC	1 cut(s)	727
VpaK11BI	GGWCC	2 cut(s)	24, 1001
XagI	CCTNNNNNAGG	1 cut(s)	1069
XapI	RAATTY	2 cut(s)	606, 623
XceI	RCATGY	2 cut(s)	182, 780
XcmI	CCANNNNNNNNNTGG	1 cut(s)	884
XmnI	GAANNNNTTC	1 cut(s)	1030
XspI	CTAG	1 cut(s)	650

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.