Rroxscaffold_3G00220280

Aminotransferase class I and II

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
Physical Location & Seq
Forward (+)
2488963 .. 2493749
4787 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00220280.1

Sequence Viewer

Length: 1368 bp
ATGAATTATCTTCAATTGTCGTCTCGTATTTGCATGCCTTCTTGTACTTCATCACAGCCAAAAACAATCGGGACCAGTTCAAACTCTGAAAATGAGAGCAAAGTTGGGAAGCTATTACAATCTCAAAAAGGTCATTGCACAAAAGTCTCGCGCAGTGTCAATATGGAGAACTTGCAAAACGAATATTTGTTTCCAGAGATATTCATGCGCGAGTTTCTGCATACTCAGAAGTACCCACATGCAAGAGTAATTAGACTTGGTATAGGTAATACTACAGAACCTATACCAGACATCATCACATCTGCTATGGCTGAGCATGCACATGCTCTATCAACAGTTGAAGGTTACAGAGGGTACGGAGCTGAGCAAGGCCACATGGCATTGAGAATGTCAATTGCACAAAGATTCTACAAGAATATGGGCATAGAAGGCAATGAGGTGTTTGTATCAGATGGTGCCCAATGTGACATTTCTCGCCTTCAAATGCTTTTAGGTTCCAACGTGACAGTAGCTGTGCAAGACCCTTCTTTCCCGGCATACATAGATTCTAGTGTCATTGCTGGTCGAGCTGGTAACTTTCAGGAGGAAACCGGGAAGTATAAGAATATTGTCTACCTCAATTGCAGACCTGAGAATAATTTTTTTCCTGACTTATCAACTGCTTCAAGGGCGGATCTCATATTTTTCTGCTCTCCAAACAATCCAACTGGAAATGCTGCATCATGGCATCAACTAAAGCAACTGGTGGAGTTCGCTAAAGCAAATGGATCAATCATAGTTTATGACTCCTCATATGCTGCTTATATATCAGATGGAAGCCCAAGATCAATTTATGAAATTCCTGGTGCCAAAGAGGTTGCAATTGAAATATCATCCTTCTCCAAATTTGCGGGGTTCACAGGAGTCCGACTTGGTTGGACGGTTGTCCCTGAAGAGTTGTTGTATGCAAATGGATTTCCGGTCATAAAAGATTATAACCGCATAGTGTGCACCTGCTTCAATGGTGCATCAAATATAGCTCAGGCTGGAGGGCTAGCATGCCTTTCTGCAGAAGGTTATCAGGCTATAACAAATGTGGTTGACTACTACAAGGAGAATGCAAAAATCATTATCGACACATTCAGATCACTTGGGTTGAAGGTGTATGGAGGCAAAAATGCTCCTTATATATGGGTACATTTTCAAGGGTTGAGTTCATGGGATGTGTTCAATCAAATTCTTGAAAAGACACACATAGTGACCATACCAGGAAAGGGATTTGGTCCTGCAGGTGAAGGGTATATCAGAGTTGGTGCTTTTGGCCACAGAGAAACCATATTGGAAGCTTCAGCAAGGCTAAAGAATTTTTTTGTTACTGATAATATTTGA

Protein Analysis

455

Amino Acids

50.11

Weight (kDa)

6.8

Isoelectric Point (pI)

41.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aminotran_1_2 PF00155 83 - 442 2.1e-33 Aminotransferase class I and II
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 975
AarI CACCTGC 2 cut(s) 1001, 1259
Acc36I ACCTGC 2 cut(s) 1001, 1259
AccB1I GGYRCC 2 cut(s) 455, 845
AccI GTMKAC 1 cut(s) 612
AccII CGCG 2 cut(s) 151, 210
AciI CCGC 3 cut(s) 671, 890, 979
AclWI GGATC 2 cut(s) 681, 775
AcoI YGGCCR 1 cut(s) 1300
AcsI RAATTY 4 cut(s) 837, 884, 1215, 1342
AcuI CTGAAG 2 cut(s) 951, 1311
AdeI CACNNNGTG 1 cut(s) 1237
AfaI GTAC 4 cut(s) 46, 233, 356, 1176
AfiI CCNNNNNNNGG 1 cut(s) 1253
AjnI CCWGG 2 cut(s) 841, 1246
AluBI AGCT 6 cut(s) 112, 362, 512, 569, 1019, 1325
AluI AGCT 6 cut(s) 112, 362, 512, 569, 1019, 1325
Alw21I GWGCWC 1 cut(s) 992
Alw26I GTCTC 2 cut(s) 27, 151
Alw44I GTGCAC 1 cut(s) 988
AlwI GGATC 2 cut(s) 681, 775
AlwNI CAGNNNCTG 1 cut(s) 512
AoxI GGCC 2 cut(s) 370, 1300
ApaLI GTGCAC 1 cut(s) 988
ApeKI GCWGC 2 cut(s) 716, 797
ApoI RAATTY 4 cut(s) 837, 884, 1215, 1342
AspLEI GCGC 2 cut(s) 153, 210
AspS9I GGNCC 2 cut(s) 72, 1262
AsuC2I CCSGG 2 cut(s) 533, 592
AsuHPI GGTGA 1 cut(s) 1283
AsuNHI GCTAGC 1 cut(s) 1033
AvaII GGWCC 2 cut(s) 72, 1262
BaeGI GKGCMC 2 cut(s) 460, 992
BalI TGGCCA 1 cut(s) 1302
BanI GGYRCC 2 cut(s) 455, 845
Bbv12I GWGCWC 1 cut(s) 992
BbvI GCAGC 2 cut(s) 703, 784
BccI CCATC 2 cut(s) 446, 806
BciT130I CCWGG 2 cut(s) 843, 1248
BcnI CCSGG 2 cut(s) 533, 592
BcoDI GTCTC 2 cut(s) 27, 151
BfaI CTAG 2 cut(s) 549, 1034
BfmI CTRYAG 3 cut(s) 273, 1047, 1266
BfuAI ACCTGC 2 cut(s) 1001, 1259
BisI GCNGC 2 cut(s) 717, 798
BlpI GCTNAGC 2 cut(s) 312, 363
BlsI GCNGC 2 cut(s) 718, 799
Bme1390I CCNGG 4 cut(s) 533, 592, 843, 1248
Bme18I GGWCC 2 cut(s) 72, 1262
BmgT120I GGNCC 2 cut(s) 72, 1262
BmiI GGNNCC 4 cut(s) 73, 457, 496, 847
BmrFI CCNGG 4 cut(s) 533, 592, 843, 1248
BmsI GCATC 3 cut(s) 728, 736, 1016
BmtI GCTAGC 1 cut(s) 1037
BoxI GACNNNNGTC 1 cut(s) 923
BpmI CTGGAG 1 cut(s) 1047
Bpu10I CCTNAGC 1 cut(s) 1020
Bpu1102I GCTNAGC 2 cut(s) 312, 363
BpuMI CCSGG 2 cut(s) 533, 592
BsaWI WCCGGW 1 cut(s) 958
Bsc4I CCNNNNNNNGG 1 cut(s) 1253
Bse1I ACTGG 3 cut(s) 75, 712, 747
Bse3DI GCAATG 3 cut(s) 133, 439, 555
BseBI CCWGG 2 cut(s) 843, 1248
BseGI GGATG 2 cut(s) 872, 1207
BseLI CCNNNNNNNGG 1 cut(s) 1253
BseMI GCAATG 3 cut(s) 133, 439, 555
BseMII CTCAG 5 cut(s) 239, 303, 354, 621, 1034
BseNI ACTGG 3 cut(s) 75, 712, 747
BseRI GAGGAG 1 cut(s) 778
BseSI GKGCMC 2 cut(s) 460, 992
BseXI GCAGC 2 cut(s) 703, 784
Bsh1236I CGCG 2 cut(s) 151, 210
BshFI GGCC 2 cut(s) 372, 1302
BshNI GGYRCC 2 cut(s) 455, 845
BsiHKAI GWGCWC 1 cut(s) 992
BsiSI CCGG 3 cut(s) 533, 591, 959
BslFI GGGAC 2 cut(s) 85, 911
BslI CCNNNNNNNGG 1 cut(s) 1253
BsmAI GTCTC 2 cut(s) 27, 151
BsmBI CGTCTC 1 cut(s) 27
BsmFI GGGAC 2 cut(s) 85, 911
BsmI GAATGC 1 cut(s) 1102
BsnI GGCC 2 cut(s) 372, 1302
Bsp1286I GDGCHC 2 cut(s) 460, 992
Bsp143I GATC 4 cut(s) 673, 767, 824, 1124
Bsp1720I GCTNAGC 2 cut(s) 312, 363
BspACI CCGC 3 cut(s) 671, 890, 979
BspANI GGCC 2 cut(s) 372, 1302
BspCNI CTCAG 5 cut(s) 238, 304, 355, 622, 1033
BspFNI CGCG 2 cut(s) 151, 210
BspLI GGNNCC 4 cut(s) 73, 457, 496, 847
BspMAI CTGCAG 2 cut(s) 1051, 1270
BspMI ACCTGC 2 cut(s) 1001, 1259
BspOI GCTAGC 1 cut(s) 1037
BspPI GGATC 2 cut(s) 681, 775
BspT107I GGYRCC 2 cut(s) 455, 845
BsrDI GCAATG 3 cut(s) 133, 439, 555
BsrI ACTGG 3 cut(s) 75, 712, 747
BssMI GATC 4 cut(s) 673, 767, 824, 1124
Bst2UI CCWGG 2 cut(s) 843, 1248
Bst4CI ACNGT 3 cut(s) 337, 508, 922
Bst6I CTCTTC 1 cut(s) 927
BstAPI GCANNNNNTGC 1 cut(s) 987
BstC8I GCNNGC 4 cut(s) 35, 318, 1035, 1039
BstDEI CTNAG 5 cut(s) 225, 312, 363, 630, 1020
BstF5I GGATG 2 cut(s) 872, 1207
BstFNI CGCG 2 cut(s) 151, 210
BstHHI GCGC 2 cut(s) 153, 210
BstKTI GATC 4 cut(s) 676, 770, 827, 1127
BstMAI GTCTC 2 cut(s) 27, 151
BstMBI GATC 4 cut(s) 673, 767, 824, 1124
BstMWI GCNNNNNNNGC 5 cut(s) 317, 429, 566, 668, 987
BstNI CCWGG 2 cut(s) 843, 1248
BstNSI RCATGY 5 cut(s) 37, 242, 320, 326, 1041
BstPAI GACNNNNGTC 1 cut(s) 923
BstSCI CCNGG 4 cut(s) 531, 590, 841, 1246
BstSFI CTRYAG 3 cut(s) 273, 1047, 1266
BstSLI GKGCMC 2 cut(s) 460, 992
BstUI CGCG 2 cut(s) 151, 210
BstV1I GCAGC 2 cut(s) 703, 784
BstX2I RGATCY 1 cut(s) 673
BstYI RGATCY 1 cut(s) 673
BsuRI GGCC 2 cut(s) 372, 1302
BtsCI GGATG 2 cut(s) 872, 1207
BtsI GCAGTG 1 cut(s) 160
BtsIMutI CAGTG 1 cut(s) 160
BveI ACCTGC 2 cut(s) 1001, 1259
Cac8I GCNNGC 4 cut(s) 35, 318, 1035, 1039
CaiI CAGNNNCTG 1 cut(s) 512
CfoI GCGC 2 cut(s) 153, 210
Cfr13I GGNCC 2 cut(s) 72, 1262
Csp6I GTAC 4 cut(s) 45, 232, 355, 1175
CviAII CATG 9 cut(s) 34, 205, 239, 317, 323, 376, 723, 1038, 1197
CviQI GTAC 4 cut(s) 45, 232, 355, 1175
DdeI CTNAG 5 cut(s) 225, 312, 363, 630, 1020
DpnI GATC 4 cut(s) 675, 769, 826, 1126
DpnII GATC 4 cut(s) 673, 767, 824, 1124
DraIII CACNNNGTG 1 cut(s) 1237
EaeI YGGCCR 1 cut(s) 1300
Eam1104I CTCTTC 1 cut(s) 927
EarI CTCTTC 1 cut(s) 927
EciI GGCGGA 1 cut(s) 686
Eco47I GGWCC 2 cut(s) 72, 1262
Eco57I CTGAAG 2 cut(s) 951, 1311
EcoRII CCWGG 2 cut(s) 841, 1246
Esp3I CGTCTC 1 cut(s) 27
FaeI CATG 9 cut(s) 37, 208, 242, 320, 326, 379, 726, 1041, 1200
FaqI GGGAC 2 cut(s) 85, 911
FatI CATG 9 cut(s) 33, 204, 238, 316, 322, 375, 722, 1037, 1196
FauI CCCGC 1 cut(s) 883
FauNDI CATATG 1 cut(s) 793
FblI GTMKAC 1 cut(s) 612
Fnu4HI GCNGC 2 cut(s) 717, 798
FokI GGATG 2 cut(s) 859, 1214
Fsp4HI GCNGC 2 cut(s) 717, 798
FspBI CTAG 2 cut(s) 549, 1034
GlaI GCGC 2 cut(s) 152, 209
GluI GCNGC 2 cut(s) 717, 798
GsuI CTGGAG 1 cut(s) 1047
HaeIII GGCC 2 cut(s) 372, 1302
HapII CCGG 3 cut(s) 533, 591, 959
HhaI GCGC 2 cut(s) 153, 210
Hin1II CATG 9 cut(s) 37, 208, 242, 320, 326, 379, 726, 1041, 1200
Hin6I GCGC 2 cut(s) 151, 208
HinP1I GCGC 2 cut(s) 151, 208
HincII GTYRAC 1 cut(s) 1081
HindII GTYRAC 1 cut(s) 1081
HindIII AAGCTT 1 cut(s) 1323
HinfI GANTC 4 cut(s) 405, 545, 785, 903
HpaII CCGG 3 cut(s) 533, 591, 959
HphI GGTGA 1 cut(s) 1283
Hpy166II GTNNAC 4 cut(s) 613, 897, 990, 1081
Hpy188I TCNGA 7 cut(s) 88, 228, 451, 811, 908, 1124, 1286
Hpy188III TCNNGA 5 cut(s) 70, 194, 581, 647, 1220
Hpy8I GTNNAC 4 cut(s) 613, 897, 990, 1081
HpyAV CCTTC 9 cut(s) 48, 335, 422, 488, 534, 886, 1046, 1132, 1268
HpyCH4III ACNGT 3 cut(s) 337, 508, 922
HpyCH4IV ACGT 1 cut(s) 501
HpyF10VI GCNNNNNNNGC 5 cut(s) 317, 429, 566, 668, 987
HpyF3I CTNAG 5 cut(s) 225, 312, 363, 630, 1020
HpySE526I ACGT 1 cut(s) 501
Hsp92II CATG 9 cut(s) 37, 208, 242, 320, 326, 379, 726, 1041, 1200
HspAI GCGC 2 cut(s) 151, 208
Kzo9I GATC 4 cut(s) 673, 767, 824, 1124
LmnI GCTCC 2 cut(s) 359, 1165
Lsp1109I GCAGC 2 cut(s) 703, 784
LweI GCATC 3 cut(s) 728, 736, 1016
MaeI CTAG 2 cut(s) 549, 1034
MaeII ACGT 1 cut(s) 501
MaeIII GTNAC 6 cut(s) 344, 464, 502, 572, 1237, 1351
MalI GATC 4 cut(s) 675, 769, 826, 1126
MboI GATC 4 cut(s) 673, 767, 824, 1124
MboII GAAGA 1 cut(s) 944
MfeI CAATTG 4 cut(s) 14, 393, 619, 861
MflI RGATCY 1 cut(s) 673
MhlI GDGCHC 2 cut(s) 460, 992
MlsI TGGCCA 1 cut(s) 1302
MluNI TGGCCA 1 cut(s) 1302
MlyI GAGTC 2 cut(s) 779, 912
MmeI TCCRAC 4 cut(s) 522, 728, 896, 931
MnlI CCTC 8 cut(s) 344, 430, 577, 626, 799, 847, 1022, 1142
Mox20I TGGCCA 1 cut(s) 1302
MscI TGGCCA 1 cut(s) 1302
MslI CAYNNNNRTG 1 cut(s) 321
Msp20I TGGCCA 1 cut(s) 1302
MspI CCGG 3 cut(s) 533, 591, 959
MspR9I CCNGG 4 cut(s) 533, 592, 843, 1248
MunI CAATTG 4 cut(s) 14, 393, 619, 861
Mva1269I GAATGC 1 cut(s) 1102
MvaI CCWGG 2 cut(s) 843, 1248
MvnI CGCG 2 cut(s) 151, 210
MwoI GCNNNNNNNGC 5 cut(s) 317, 429, 566, 668, 987
NciI CCSGG 2 cut(s) 533, 592
NdeI CATATG 1 cut(s) 793
NdeII GATC 4 cut(s) 673, 767, 824, 1124
NheI GCTAGC 1 cut(s) 1033
NlaIII CATG 9 cut(s) 37, 208, 242, 320, 326, 379, 726, 1041, 1200
NlaIV GGNNCC 4 cut(s) 73, 457, 496, 847
NmuCI GTSAC 3 cut(s) 464, 502, 1237
NspI RCATGY 5 cut(s) 37, 242, 320, 326, 1041
PaeI GCATGC 3 cut(s) 37, 320, 1041
PaqCI CACCTGC 2 cut(s) 1001, 1259
PctI GAATGC 1 cut(s) 1102
PfeI GAWTC 2 cut(s) 405, 545
PkrI GCNGC 2 cut(s) 718, 799
PleI GAGTC 2 cut(s) 779, 911
PpsI GAGTC 2 cut(s) 779, 911
PshAI GACNNNNGTC 1 cut(s) 923
PsiI TTATAA 1 cut(s) 975
Psp6I CCWGG 2 cut(s) 841, 1246
PspGI CCWGG 2 cut(s) 841, 1246
PspN4I GGNNCC 4 cut(s) 73, 457, 496, 847
PspPI GGNCC 2 cut(s) 72, 1262
PstI CTGCAG 2 cut(s) 1051, 1270
PstNI CAGNNNCTG 1 cut(s) 512
PsuI RGATCY 1 cut(s) 673
RsaI GTAC 4 cut(s) 46, 233, 356, 1176
RsaNI GTAC 4 cut(s) 45, 232, 355, 1175
RseI CAYNNNNRTG 1 cut(s) 321
SatI GCNGC 2 cut(s) 717, 798
Sau3AI GATC 4 cut(s) 673, 767, 824, 1124
Sau96I GGNCC 2 cut(s) 72, 1262
SbfI CCTGCAGG 1 cut(s) 1270
SchI GAGTC 2 cut(s) 779, 912
ScrFI CCNGG 4 cut(s) 533, 592, 843, 1248
SdaI CCTGCAGG 1 cut(s) 1270
SduI GDGCHC 2 cut(s) 460, 992
SfaNI GCATC 3 cut(s) 728, 736, 1016
SfcI CTRYAG 3 cut(s) 273, 1047, 1266
SinI GGWCC 2 cut(s) 72, 1262
SmiMI CAYNNNNRTG 1 cut(s) 321
SphI GCATGC 3 cut(s) 37, 320, 1041
Sse8387I CCTGCAGG 1 cut(s) 1270
SsiI CCGC 3 cut(s) 671, 890, 979
SspI AATATT 3 cut(s) 185, 607, 1363
SspMI CTAG 2 cut(s) 549, 1034
StyD4I CCNGG 4 cut(s) 531, 590, 841, 1246
TaaI ACNGT 3 cut(s) 337, 508, 922
TaiI ACGT 1 cut(s) 504
TaqI TCGA 2 cut(s) 565, 1113
TatI WGTACW 1 cut(s) 44
TfiI GAWTC 2 cut(s) 405, 545
TscAI CASTG 1 cut(s) 160
TseFI GTSAC 3 cut(s) 464, 502, 1237
TseI GCWGC 2 cut(s) 716, 797
Tsp45I GTSAC 3 cut(s) 464, 502, 1237
TspDTI ATGAA 5 cut(s) 17, 39, 193, 849, 1185
TspGWI ACGGA 1 cut(s) 372
TspRI CASTG 1 cut(s) 160
VneI GTGCAC 1 cut(s) 988
VpaK11BI GGWCC 2 cut(s) 72, 1262
XapI RAATTY 4 cut(s) 837, 884, 1215, 1342
XceI RCATGY 5 cut(s) 37, 242, 320, 326, 1041
XmiI GTMKAC 1 cut(s) 612
XspI CTAG 2 cut(s) 549, 1034
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.