FvH4_5g38260

Aminotransferase class I and II

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
Physical Location & Seq
Reverse (-)
28290413 .. 28293991
3579 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g38260.t5

Sequence Viewer

Length: 1353 bp
ATGAATTGTCTTCAATTTTCATCTCCTGTTTGTGTGCCTTCTTGTATCTCATCACAGCCTAAAACAATCTGGACCAGTTCAAACTCTGAAAATGAGAGCAAAGTTGGGAAGCTATTACAATCTCAAAAAGGTCATTGCACAAAAGTCTCACGCAGTGTCAATATGGAGAACTTGCAAAACGGATATTTGTTTCCAGAGATATTCATGCGCGAGTTTCTGCATACTCAGAAGTACCCAAATGCAAGAGTAATAAGACTTGGTATAGGTAATACTACAGAACCTATACCAGACATCATCACATCTGCTATGGCTGAGCATGCGCATGCTCTTGCAACAGTTGAAGGTTACAGTGGGTACGGAGCTGAGCAAGGCCACAGGGAATTGAGAATGTCAATTGCAGAAAGATTCTACAAGAATATGGGCATAGGAGGCAATGAGGTGTTTGTATCAGATGGTGCACAGTGTGACATTTCTCGCCTTCAGATGCTTTTAGGTTCCAATGTGACAGTAGCTGTGCAAGACCCTTCTTTCCCGGCATACATAGATTCTAGTGTCATTGCTGGTCGAGCTGGCAACTTTCAACAGGAAACCGGGAAGTATAAGAACATTGTCTACCTCAATTGCACACCTGAGAATAATTTTTTCCCCGACTTATCAACTGCTTCAAGGGCAGATCTCATATTTTTCTGTTCTCCAAACAATCCAACTGGAAATGCTGCATCATTGCATCAACTAAAGCAACTGGTGGAGTTTGCAAAAGCAAATGGATCAATCATAGTTTATGACTCCTCATATGCTGCTTATATATCAGATGGAAGCCCAAGATCAATTTACGAAATTCCTGGTGCCAGAGAGGTTGCTATTGAAATATCATCCTTCTCCAAATTTGCGGGGTTCACAGGAGTCCGACTTGGTTGGACCGTTGTCCCTGAAGAGTTGTCGTATGCAAATGGATTTCCGGTCATAAAAGATTATAACCGGATAGTATGCACCTGCTTCAATGGTGCATCAAATATAGCTCAGGCTGGAGGGCTAGCATGCCTTTCTGCAGAGGGACACCAGGCTATAACGAGGGTGATTGACTACTACAAGGAGAATGCAGAAATCATTGTTGACACATTCAGATCACTTGGATTGAAGGTGTATGGAGGCAAAAATGCACCTTACATATGGGTGCATTTTCCGGGGCTGAGTTCATGGGATGTTTTCAATGAAATTCTTGAGAAGACAGACATAGTGACCATACCCGGAAAGGGATTTGGTCCTGCAGGTGAAGGGTATATTAGAGTTGGTGCTTTTGGCCACAGAGAGACTATATTGGAAGCTTCAGCAAGGCTAAAGAATCTTTTTTAA

Protein Analysis

451

Amino Acids

49.22

Weight (kDa)

6.17

Isoelectric Point (pI)

39.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aminotran_1_2 PF00155 15 - 374 2.1e-33 Aminotransferase class I and II
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 975
AarI CACCTGC 2 cut(s) 1001, 1259
Acc16I TGCGCA 1 cut(s) 321
Acc36I ACCTGC 2 cut(s) 1001, 1259
AccB1I GGYRCC 1 cut(s) 845
AccI GTMKAC 1 cut(s) 612
AccII CGCG 1 cut(s) 210
AciI CCGC 1 cut(s) 890
AclWI GGATC 1 cut(s) 775
AcoI YGGCCR 1 cut(s) 1300
AcsI RAATTY 3 cut(s) 837, 884, 1215
AcuI CTGAAG 3 cut(s) 464, 951, 1311
AdeI CACNNNGTG 2 cut(s) 155, 464
AfaI GTAC 2 cut(s) 233, 356
AfiI CCNNNNNNNGG 1 cut(s) 1253
AgsI TTSAA 9 cut(s) 14, 81, 341, 581, 666, 866, 1000, 1138, 1210
AjnI CCWGG 2 cut(s) 841, 1059
AluBI AGCT 6 cut(s) 112, 362, 512, 569, 1019, 1325
AluI AGCT 6 cut(s) 112, 362, 512, 569, 1019, 1325
Alw21I GWGCWC 1 cut(s) 460
Alw26I GTCTC 2 cut(s) 151, 1304
Alw44I GTGCAC 1 cut(s) 456
AlwI GGATC 1 cut(s) 775
AlwNI CAGNNNCTG 1 cut(s) 512
AoxI GGCC 2 cut(s) 370, 1300
ApaLI GTGCAC 1 cut(s) 456
ApeKI GCWGC 2 cut(s) 716, 797
ApoI RAATTY 3 cut(s) 837, 884, 1215
AspLEI GCGC 2 cut(s) 210, 322
AspS9I GGNCC 3 cut(s) 72, 918, 1262
AsuC2I CCSGG 4 cut(s) 533, 592, 1185, 1248
AsuHPI GGTGA 2 cut(s) 1087, 1283
AsuNHI GCTAGC 1 cut(s) 1033
AvaII GGWCC 3 cut(s) 72, 918, 1262
BaeGI GKGCMC 1 cut(s) 460
BalI TGGCCA 1 cut(s) 1302
BanI GGYRCC 1 cut(s) 845
BbsI GAAGAC 2 cut(s) 2, 1232
Bbv12I GWGCWC 1 cut(s) 460
BbvI GCAGC 2 cut(s) 703, 784
BccI CCATC 2 cut(s) 446, 806
BciT130I CCWGG 2 cut(s) 843, 1061
BcnI CCSGG 4 cut(s) 533, 592, 1185, 1248
BcoDI GTCTC 2 cut(s) 151, 1304
BfaI CTAG 2 cut(s) 549, 1034
BfmI CTRYAG 3 cut(s) 273, 1047, 1266
BfuAI ACCTGC 2 cut(s) 1001, 1259
BglII AGATCT 1 cut(s) 673
BisI GCNGC 2 cut(s) 717, 798
BlpI GCTNAGC 2 cut(s) 312, 363
BlsI GCNGC 2 cut(s) 718, 799
Bme1390I CCNGG 6 cut(s) 533, 592, 843, 1061, 1185, 1248
Bme18I GGWCC 3 cut(s) 72, 918, 1262
BmgT120I GGNCC 3 cut(s) 72, 918, 1262
BmiI GGNNCC 2 cut(s) 496, 847
BmrFI CCNGG 6 cut(s) 533, 592, 843, 1061, 1185, 1248
BmsI GCATC 4 cut(s) 474, 728, 736, 1016
BmtI GCTAGC 1 cut(s) 1037
BoxI GACNNNNGTC 1 cut(s) 923
BpiI GAAGAC 2 cut(s) 2, 1232
BpmI CTGGAG 1 cut(s) 1047
Bpu10I CCTNAGC 1 cut(s) 1020
Bpu1102I GCTNAGC 2 cut(s) 312, 363
BpuEI CTTGAG 1 cut(s) 1241
BpuMI CCSGG 4 cut(s) 533, 592, 1185, 1248
BsaJI CCNNGG 1 cut(s) 1184
BsaWI WCCGGW 2 cut(s) 958, 978
Bsc4I CCNNNNNNNGG 1 cut(s) 1253
Bse1I ACTGG 3 cut(s) 75, 712, 747
Bse3DI GCAATG 4 cut(s) 133, 439, 555, 722
BseBI CCWGG 2 cut(s) 843, 1061
BseDI CCNNGG 1 cut(s) 1184
BseGI GGATG 2 cut(s) 872, 1207
BseLI CCNNNNNNNGG 1 cut(s) 1253
BseMI GCAATG 4 cut(s) 133, 439, 555, 722
BseMII CTCAG 6 cut(s) 239, 303, 354, 621, 1034, 1181
BseNI ACTGG 3 cut(s) 75, 712, 747
BseRI GAGGAG 1 cut(s) 778
BseSI GKGCMC 1 cut(s) 460
BseXI GCAGC 2 cut(s) 703, 784
Bsh1236I CGCG 1 cut(s) 210
BshFI GGCC 2 cut(s) 372, 1302
BshNI GGYRCC 1 cut(s) 845
BsiHKAI GWGCWC 1 cut(s) 460
BsiSI CCGG 6 cut(s) 533, 591, 959, 979, 1184, 1248
BslFI GGGAC 2 cut(s) 911, 1068
BslI CCNNNNNNNGG 1 cut(s) 1253
BsmAI GTCTC 2 cut(s) 151, 1304
BsmFI GGGAC 2 cut(s) 911, 1068
BsmI GAATGC 1 cut(s) 1102
BsnI GGCC 2 cut(s) 372, 1302
Bsp1286I GDGCHC 1 cut(s) 460
Bsp143I GATC 4 cut(s) 673, 767, 824, 1124
Bsp1720I GCTNAGC 2 cut(s) 312, 363
BspACI CCGC 1 cut(s) 890
BspANI GGCC 2 cut(s) 372, 1302
BspCNI CTCAG 6 cut(s) 238, 304, 355, 622, 1033, 1182
BspFNI CGCG 1 cut(s) 210
BspLI GGNNCC 2 cut(s) 496, 847
BspMAI CTGCAG 2 cut(s) 1051, 1270
BspMI ACCTGC 2 cut(s) 1001, 1259
BspOI GCTAGC 1 cut(s) 1037
BspPI GGATC 1 cut(s) 775
BspT107I GGYRCC 1 cut(s) 845
BsrDI GCAATG 4 cut(s) 133, 439, 555, 722
BsrI ACTGG 3 cut(s) 75, 712, 747
BssECI CCNNGG 1 cut(s) 1184
BssMI GATC 4 cut(s) 673, 767, 824, 1124
Bst2UI CCWGG 2 cut(s) 843, 1061
Bst4CI ACNGT 5 cut(s) 337, 350, 462, 508, 922
Bst6I CTCTTC 1 cut(s) 927
BstC8I GCNNGC 5 cut(s) 318, 324, 571, 1035, 1039
BstDEI CTNAG 6 cut(s) 225, 312, 363, 630, 1020, 1190
BstF5I GGATG 2 cut(s) 872, 1207
BstFNI CGCG 1 cut(s) 210
BstHHI GCGC 2 cut(s) 210, 322
BstKTI GATC 4 cut(s) 676, 770, 827, 1127
BstMAI GTCTC 2 cut(s) 151, 1304
BstMBI GATC 4 cut(s) 673, 767, 824, 1124
BstMWI GCNNNNNNNGC 4 cut(s) 317, 429, 566, 668
BstNI CCWGG 2 cut(s) 843, 1061
BstNSI RCATGY 3 cut(s) 320, 326, 1041
BstPAI GACNNNNGTC 1 cut(s) 923
BstSCI CCNGG 6 cut(s) 531, 590, 841, 1059, 1183, 1246
BstSFI CTRYAG 3 cut(s) 273, 1047, 1266
BstSLI GKGCMC 1 cut(s) 460
BstUI CGCG 1 cut(s) 210
BstV1I GCAGC 2 cut(s) 703, 784
BstV2I GAAGAC 2 cut(s) 2, 1232
BstX2I RGATCY 1 cut(s) 673
BstYI RGATCY 1 cut(s) 673
BsuRI GGCC 2 cut(s) 372, 1302
BtsCI GGATG 2 cut(s) 872, 1207
BtsI GCAGTG 1 cut(s) 160
BtsIMutI CAGTG 3 cut(s) 160, 355, 467
BveI ACCTGC 2 cut(s) 1001, 1259
Cac8I GCNNGC 5 cut(s) 318, 324, 571, 1035, 1039
CaiI CAGNNNCTG 1 cut(s) 512
CfoI GCGC 2 cut(s) 210, 322
Cfr13I GGNCC 3 cut(s) 72, 918, 1262
Csp6I GTAC 2 cut(s) 232, 355
CviAII CATG 5 cut(s) 205, 317, 323, 1038, 1197
CviQI GTAC 2 cut(s) 232, 355
DdeI CTNAG 6 cut(s) 225, 312, 363, 630, 1020, 1190
DpnI GATC 4 cut(s) 675, 769, 826, 1126
DpnII GATC 4 cut(s) 673, 767, 824, 1124
DraIII CACNNNGTG 2 cut(s) 155, 464
EaeI YGGCCR 1 cut(s) 1300
Eam1104I CTCTTC 1 cut(s) 927
EarI CTCTTC 1 cut(s) 927
Eco47I GGWCC 3 cut(s) 72, 918, 1262
Eco57I CTGAAG 3 cut(s) 464, 951, 1311
EcoRII CCWGG 2 cut(s) 841, 1059
FaeI CATG 5 cut(s) 208, 320, 326, 1041, 1200
FaqI GGGAC 2 cut(s) 911, 1068
FatI CATG 5 cut(s) 204, 316, 322, 1037, 1196
FauI CCCGC 1 cut(s) 883
FauNDI CATATG 2 cut(s) 793, 1169
FblI GTMKAC 1 cut(s) 612
Fnu4HI GCNGC 2 cut(s) 717, 798
FokI GGATG 2 cut(s) 859, 1214
Fsp4HI GCNGC 2 cut(s) 717, 798
FspAI RTGCGCAY 1 cut(s) 321
FspBI CTAG 2 cut(s) 549, 1034
FspI TGCGCA 1 cut(s) 321
GlaI GCGC 2 cut(s) 209, 321
GluI GCNGC 2 cut(s) 717, 798
GsuI CTGGAG 1 cut(s) 1047
HaeIII GGCC 2 cut(s) 372, 1302
HapII CCGG 6 cut(s) 533, 591, 959, 979, 1184, 1248
HhaI GCGC 2 cut(s) 210, 322
Hin1II CATG 5 cut(s) 208, 320, 326, 1041, 1200
Hin6I GCGC 2 cut(s) 208, 320
HinP1I GCGC 2 cut(s) 208, 320
HincII GTYRAC 1 cut(s) 1114
HindII GTYRAC 1 cut(s) 1114
HindIII AAGCTT 1 cut(s) 1323
HinfI GANTC 5 cut(s) 405, 545, 785, 903, 1342
HpaII CCGG 6 cut(s) 533, 591, 959, 979, 1184, 1248
HphI GGTGA 2 cut(s) 1087, 1283
Hpy166II GTNNAC 4 cut(s) 458, 613, 897, 1114
Hpy188I TCNGA 7 cut(s) 88, 228, 451, 483, 811, 908, 1124
Hpy188III TCNNGA 3 cut(s) 70, 194, 1220
Hpy8I GTNNAC 4 cut(s) 458, 613, 897, 1114
HpyAV CCTTC 7 cut(s) 48, 335, 488, 534, 886, 1132, 1268
HpyCH4III ACNGT 5 cut(s) 337, 350, 462, 508, 922
HpyF10VI GCNNNNNNNGC 4 cut(s) 317, 429, 566, 668
HpyF3I CTNAG 6 cut(s) 225, 312, 363, 630, 1020, 1190
Hsp92II CATG 5 cut(s) 208, 320, 326, 1041, 1200
HspAI GCGC 2 cut(s) 208, 320
Kzo9I GATC 4 cut(s) 673, 767, 824, 1124
LmnI GCTCC 1 cut(s) 359
Lsp1109I GCAGC 2 cut(s) 703, 784
LweI GCATC 4 cut(s) 474, 728, 736, 1016
MaeI CTAG 2 cut(s) 549, 1034
MaeIII GTNAC 4 cut(s) 344, 464, 502, 1237
MalI GATC 4 cut(s) 675, 769, 826, 1126
MboI GATC 4 cut(s) 673, 767, 824, 1124
MboII GAAGA 2 cut(s) 944, 1237
MfeI CAATTG 2 cut(s) 393, 619
MflI RGATCY 1 cut(s) 673
MhlI GDGCHC 1 cut(s) 460
MlsI TGGCCA 1 cut(s) 1302
MluNI TGGCCA 1 cut(s) 1302
MlyI GAGTC 2 cut(s) 779, 912
MmeI TCCRAC 3 cut(s) 728, 896, 931
MnlI CCTC 9 cut(s) 422, 430, 626, 799, 847, 1022, 1045, 1065, 1142
Mox20I TGGCCA 1 cut(s) 1302
MscI TGGCCA 1 cut(s) 1302
MseI TTAA 1 cut(s) 1351
MslI CAYNNNNRTG 2 cut(s) 321, 1172
Msp20I TGGCCA 1 cut(s) 1302
MspI CCGG 6 cut(s) 533, 591, 959, 979, 1184, 1248
MspR9I CCNGG 6 cut(s) 533, 592, 843, 1061, 1185, 1248
MunI CAATTG 2 cut(s) 393, 619
Mva1269I GAATGC 1 cut(s) 1102
MvaI CCWGG 2 cut(s) 843, 1061
MvnI CGCG 1 cut(s) 210
MwoI GCNNNNNNNGC 4 cut(s) 317, 429, 566, 668
NciI CCSGG 4 cut(s) 533, 592, 1185, 1248
NdeI CATATG 2 cut(s) 793, 1169
NdeII GATC 4 cut(s) 673, 767, 824, 1124
NheI GCTAGC 1 cut(s) 1033
NlaIII CATG 5 cut(s) 208, 320, 326, 1041, 1200
NlaIV GGNNCC 2 cut(s) 496, 847
NmuCI GTSAC 3 cut(s) 464, 502, 1237
NsbI TGCGCA 1 cut(s) 321
NspI RCATGY 3 cut(s) 320, 326, 1041
PaeI GCATGC 3 cut(s) 320, 326, 1041
PaqCI CACCTGC 2 cut(s) 1001, 1259
PctI GAATGC 1 cut(s) 1102
PfeI GAWTC 3 cut(s) 405, 545, 1342
PkrI GCNGC 2 cut(s) 718, 799
PleI GAGTC 2 cut(s) 779, 911
PpsI GAGTC 2 cut(s) 779, 911
PshAI GACNNNNGTC 1 cut(s) 923
PsiI TTATAA 1 cut(s) 975
Psp6I CCWGG 2 cut(s) 841, 1059
PspGI CCWGG 2 cut(s) 841, 1059
PspN4I GGNNCC 2 cut(s) 496, 847
PspPI GGNCC 3 cut(s) 72, 918, 1262
PsrI GAACNNNNNNTAC 2 cut(s) 596, 628
PstI CTGCAG 2 cut(s) 1051, 1270
PstNI CAGNNNCTG 1 cut(s) 512
PsuI RGATCY 1 cut(s) 673
RsaI GTAC 2 cut(s) 233, 356
RsaNI GTAC 2 cut(s) 232, 355
RseI CAYNNNNRTG 2 cut(s) 321, 1172
SaqAI TTAA 1 cut(s) 1351
SatI GCNGC 2 cut(s) 717, 798
Sau3AI GATC 4 cut(s) 673, 767, 824, 1124
Sau96I GGNCC 3 cut(s) 72, 918, 1262
SbfI CCTGCAGG 1 cut(s) 1270
SchI GAGTC 2 cut(s) 779, 912
ScrFI CCNGG 6 cut(s) 533, 592, 843, 1061, 1185, 1248
SdaI CCTGCAGG 1 cut(s) 1270
SduI GDGCHC 1 cut(s) 460
SfaNI GCATC 4 cut(s) 474, 728, 736, 1016
SfcI CTRYAG 3 cut(s) 273, 1047, 1266
SinI GGWCC 3 cut(s) 72, 918, 1262
SmiMI CAYNNNNRTG 2 cut(s) 321, 1172
SmlI CTYRAG 1 cut(s) 1220
SmoI CTYRAG 1 cut(s) 1220
SphI GCATGC 3 cut(s) 320, 326, 1041
Sse8387I CCTGCAGG 1 cut(s) 1270
SsiI CCGC 1 cut(s) 890
SspMI CTAG 2 cut(s) 549, 1034
StyD4I CCNGG 6 cut(s) 531, 590, 841, 1059, 1183, 1246
TaaI ACNGT 5 cut(s) 337, 350, 462, 508, 922
TaqI TCGA 1 cut(s) 565
TfiI GAWTC 3 cut(s) 405, 545, 1342
Tru1I TTAA 1 cut(s) 1351
Tru9I TTAA 1 cut(s) 1351
TscAI CASTG 3 cut(s) 160, 355, 467
TseFI GTSAC 3 cut(s) 464, 502, 1237
TseI GCWGC 2 cut(s) 716, 797
Tsp45I GTSAC 3 cut(s) 464, 502, 1237
TspDTI ATGAA 5 cut(s) 9, 17, 193, 1185, 1227
TspGWI ACGGA 2 cut(s) 195, 372
TspRI CASTG 3 cut(s) 160, 355, 467
VneI GTGCAC 1 cut(s) 456
VpaK11BI GGWCC 3 cut(s) 72, 918, 1262
XapI RAATTY 3 cut(s) 837, 884, 1215
XceI RCATGY 3 cut(s) 320, 326, 1041
XmiI GTMKAC 1 cut(s) 612
XspI CTAG 2 cut(s) 549, 1034
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.