MD15G1412200.v1.1

Aminotransferase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
Physical Location & Seq
Reverse (-)
51171126 .. 51174031
2906 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1412200.v1.1.491

Sequence Viewer

Length: 1305 bp
ATGGAGAAATTGCGGAATGGCTACCTGTTTCCTGAGATTTCAAGGCTGGAGCTTGAACACATTGAGAAGTACCCGAATGCAAAGTTGATAAGCCTCGGAATCGGCGACACAACAGAACCAGTACCAGAAATCATCGCATCAAGCATGGCTAATTATGCACATGCCCTTTCGACCGCTGACGGTTATTCAGGGTACGGACCTGAACAAGGCAATAAGGCATTGCGGGAGGCAATTGTAAAAGCATTCTATAAAGATCTGCAGATAAAAGACACAGAAGTTTTCGTATCAGATGGTGCGCAGTGTGACATTACTCGGCTTCAGGTACTCAATTACCGTTTTAGTTTGGCGGATGCTCGTTATCTTAACACGTGCAACGCTAGAAGCAAGGGTATTCCGGTAACACAGATTTATGATTTTCTTATGTACTTACAGTTGTTGCTGGGCTCCAGAGTGACCATAGCTGTGCAGGATCCATCATTTCCGGCTTACATCGACTCAAGTGTGATTATCGGTCAAGCTGGAGACGAAGGTGGGAGTGGAAGGTATGGGAGCATTGAGTACATGAAGTGTGGACCAGAAAATAACTTCTTTCCGGACTTGGCAACCACTTCAAGAACAGATGTTATCTTCTTCTGCTCTCCAAACAACCCCACTGGTCATGCAGCAACTAGGGAGCAATTAGAGCTTCTTGTCAAGTTTGCCAGGGACAATGGATCCATTATCATCTTCGACTCTGCTTATTCGTCTTATGTACAAGACGATAACTGCCCTCGTTCCATCTTTGAAATTCCCGGCTCTAGACAGGTTGCGATCGAAATATCATCATTCTCCAAGTTTGCTGGCTTCACTGGTGTCCGTCTAGGCTGGACAGTTGTGCCTGACGAGCTCTTATACTTGAATGGATTTCCTGTTATACATGACTTCAATCGCATTGTCAGCACTTGCTTCAATGGGGCGTCCAATGTTGCTCAAGCTGGTGGACTCGCCTGTCTTTCCTCGCAAGGCTTCAAGGCTGTGAATTCCCTGGTTGACTACTACATGGAGAATGCAAATATACTGGGTGAGGCATTGTCTTCTGTTGGTTTACAAGTATTCGGCGGTGCAAATGCTCCCTACATTTGGGTGCACTTTCCAGGCTCAAATTCTTGGGATGTATGCAAAGACATTCTTGAGAAAACACACATAATTACAGTTCCGGGATCTGGATTTGGTCCGTCGGGTGAAGAGTTCCTGAGAATTAGTGCTTTTGGCCACCGAGAGTGTATACTAGAGGCCGCAGCTAGGCTTAAAACCCTATTTCTATAG

Protein Analysis

435

Amino Acids

47.51

Weight (kDa)

5.07

Isoelectric Point (pI)

43.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aminotran_1_2 PF00155 204 - 428 6.4e-32 Aminotransferase class I and II
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 987
Acc16I TGCGCA 1 cut(s) 297
AccI GTMKAC 1 cut(s) 1264
AccIII TCCGGA 1 cut(s) 592
AciI CCGC 6 cut(s) 13, 174, 223, 347, 1098, 1275
AclWI GGATC 5 cut(s) 464, 477, 708, 721, 1207
AcoI YGGCCR 1 cut(s) 1249
AcsI RAATTY 3 cut(s) 786, 1018, 1141
AcuI CTGAAG 1 cut(s) 302
AcvI CACGTG 1 cut(s) 369
AcyI GRCGYC 1 cut(s) 956
AfaI GTAC 7 cut(s) 71, 123, 194, 324, 425, 560, 753
AfiI CCNNNNNNNGG 4 cut(s) 206, 1119, 1202, 1281
AflIII ACRYGT 1 cut(s) 366
AgsI TTSAA 8 cut(s) 42, 56, 612, 785, 898, 925, 949, 1009
AjnI CCWGG 3 cut(s) 701, 1023, 1132
AluBI AGCT 7 cut(s) 52, 461, 518, 685, 886, 974, 1280
AluI AGCT 7 cut(s) 52, 461, 518, 685, 886, 974, 1280
Alw21I GWGCWC 2 cut(s) 888, 1128
Alw26I GTCTC 1 cut(s) 516
Alw44I GTGCAC 1 cut(s) 1124
AlwI GGATC 5 cut(s) 464, 477, 708, 721, 1207
Aor13HI TCCGGA 1 cut(s) 592
AoxI GGCC 2 cut(s) 1249, 1272
ApaLI GTGCAC 1 cut(s) 1124
ApeKI GCWGC 2 cut(s) 662, 1277
ApoI RAATTY 3 cut(s) 786, 1018, 1141
AspLEI GCGC 1 cut(s) 298
AspS9I GGNCC 3 cut(s) 197, 572, 1211
AsuC2I CCSGG 2 cut(s) 792, 1197
AsuHPI GGTGA 2 cut(s) 1073, 1232
AvaII GGWCC 3 cut(s) 197, 572, 1211
BaeGI GKGCMC 1 cut(s) 1128
BalI TGGCCA 1 cut(s) 1251
BamHI GGATCC 2 cut(s) 469, 713
BanII GRGCYC 2 cut(s) 446, 888
BbrPI CACGTG 1 cut(s) 369
BbsI GAAGAC 1 cut(s) 1065
Bbv12I GWGCWC 2 cut(s) 888, 1128
BbvI GCAGC 2 cut(s) 674, 1289
BccI CCATC 3 cut(s) 284, 481, 785
BciT130I CCWGG 3 cut(s) 703, 1025, 1134
BcnI CCSGG 2 cut(s) 792, 1197
BcoDI GTCTC 1 cut(s) 516
BfaI CTAG 6 cut(s) 378, 669, 798, 860, 1268, 1281
BfmI CTRYAG 2 cut(s) 257, 1301
BglII AGATCT 1 cut(s) 253
BisI GCNGC 3 cut(s) 663, 1275, 1278
BlsI GCNGC 3 cut(s) 664, 1276, 1279
Bme1390I CCNGG 5 cut(s) 703, 792, 1025, 1134, 1197
Bme18I GGWCC 3 cut(s) 197, 572, 1211
BmgT120I GGNCC 3 cut(s) 197, 572, 1211
BmiI GGNNCC 3 cut(s) 445, 471, 715
BmrFI CCNGG 5 cut(s) 703, 792, 1025, 1134, 1197
BmrI ACTGGG 1 cut(s) 1067
BmsI GCATC 2 cut(s) 146, 340
BmuI ACTGGG 1 cut(s) 1067
BpiI GAAGAC 1 cut(s) 1065
BpmI CTGGAG 3 cut(s) 68, 430, 540
BpuEI CTTGAG 3 cut(s) 481, 954, 1190
BpuMI CCSGG 2 cut(s) 792, 1197
BsaAI YACGTR 1 cut(s) 369
BsaHI GRCGYC 1 cut(s) 956
BsaJI CCNNGG 3 cut(s) 94, 702, 1023
BsaWI WCCGGW 2 cut(s) 394, 592
Bsc4I CCNNNNNNNGG 4 cut(s) 206, 1119, 1202, 1281
Bse1I ACTGG 4 cut(s) 119, 658, 853, 1062
Bse3DI GCAATG 1 cut(s) 218
BseAI TCCGGA 1 cut(s) 592
BseBI CCWGG 3 cut(s) 703, 1025, 1134
BseDI CCNNGG 3 cut(s) 94, 702, 1023
BseGI GGATG 2 cut(s) 355, 1156
BseLI CCNNNNNNNGG 4 cut(s) 206, 1119, 1202, 1281
BseMI GCAATG 1 cut(s) 218
BseMII CTCAG 2 cut(s) 24, 1223
BseNI ACTGG 4 cut(s) 119, 658, 853, 1062
BseSI GKGCMC 1 cut(s) 1128
BseXI GCAGC 2 cut(s) 674, 1289
BseYI CCCAGC 1 cut(s) 439
BsgI GTGCAG 1 cut(s) 485
Bsh1285I CGRYCG 2 cut(s) 174, 813
BshFI GGCC 2 cut(s) 1251, 1274
BsiEI CGRYCG 2 cut(s) 174, 813
BsiHKAI GWGCWC 2 cut(s) 888, 1128
BsiSI CCGG 5 cut(s) 395, 482, 593, 792, 1196
BslFI GGGAC 1 cut(s) 719
BslI CCNNNNNNNGG 4 cut(s) 206, 1119, 1202, 1281
BsmAI GTCTC 1 cut(s) 516
BsmBI CGTCTC 1 cut(s) 516
BsmFI GGGAC 1 cut(s) 719
BsmI GAATGC 3 cut(s) 82, 242, 1051
BsnI GGCC 2 cut(s) 1251, 1274
Bsp1286I GDGCHC 3 cut(s) 446, 888, 1128
Bsp13I TCCGGA 1 cut(s) 592
Bsp1407I TGTACA 1 cut(s) 751
Bsp143I GATC 5 cut(s) 253, 469, 713, 810, 1199
BspACI CCGC 6 cut(s) 13, 174, 223, 347, 1098, 1275
BspANI GGCC 2 cut(s) 1251, 1274
BspCNI CTCAG 2 cut(s) 25, 1224
BspEI TCCGGA 1 cut(s) 592
BspLI GGNNCC 3 cut(s) 445, 471, 715
BspMAI CTGCAG 1 cut(s) 261
BspPI GGATC 5 cut(s) 464, 477, 708, 721, 1207
BsrDI GCAATG 1 cut(s) 218
BsrGI TGTACA 1 cut(s) 751
BsrI ACTGG 4 cut(s) 119, 658, 853, 1062
BssECI CCNNGG 3 cut(s) 94, 702, 1023
BssMI GATC 5 cut(s) 253, 469, 713, 810, 1199
BssNAI GTATAC 1 cut(s) 1265
BssNI GRCGYC 1 cut(s) 956
Bst1107I GTATAC 1 cut(s) 1265
Bst2UI CCWGG 3 cut(s) 703, 1025, 1134
Bst4CI ACNGT 5 cut(s) 182, 335, 432, 871, 1192
Bst6I CTCTTC 1 cut(s) 1218
BstACI GRCGYC 1 cut(s) 956
BstAUI TGTACA 1 cut(s) 751
BstBAI YACGTR 1 cut(s) 369
BstC8I GCNNGC 1 cut(s) 841
BstDEI CTNAG 2 cut(s) 33, 1232
BstENI CCTNNNNNAGG 1 cut(s) 204
BstF5I GGATG 2 cut(s) 355, 1156
BstHHI GCGC 1 cut(s) 298
BstKTI GATC 5 cut(s) 256, 472, 716, 813, 1202
BstMAI GTCTC 1 cut(s) 516
BstMBI GATC 5 cut(s) 253, 469, 713, 810, 1199
BstMCI CGRYCG 2 cut(s) 174, 813
BstMWI GCNNNNNNNGC 4 cut(s) 155, 682, 883, 936
BstNI CCWGG 3 cut(s) 703, 1025, 1134
BstNSI RCATGY 1 cut(s) 164
BstSCI CCNGG 5 cut(s) 701, 790, 1023, 1132, 1195
BstSFI CTRYAG 2 cut(s) 257, 1301
BstSLI GKGCMC 1 cut(s) 1128
BstV1I GCAGC 2 cut(s) 674, 1289
BstV2I GAAGAC 1 cut(s) 1065
BstX2I RGATCY 4 cut(s) 253, 469, 713, 1199
BstYI RGATCY 4 cut(s) 253, 469, 713, 1199
BstZ17I GTATAC 1 cut(s) 1265
BsuRI GGCC 2 cut(s) 1251, 1274
BtgZI GCGATG 1 cut(s) 118
BtsCI GGATG 2 cut(s) 355, 1156
BtsI GCAGTG 1 cut(s) 305
BtsIMutI CAGTG 3 cut(s) 305, 651, 846
Cac8I GCNNGC 1 cut(s) 841
CfoI GCGC 1 cut(s) 298
Cfr13I GGNCC 3 cut(s) 197, 572, 1211
CseI GACGC 1 cut(s) 945
Csp6I GTAC 7 cut(s) 70, 122, 193, 323, 424, 559, 752
CviAII CATG 6 cut(s) 145, 161, 562, 659, 917, 1039
CviQI GTAC 7 cut(s) 70, 122, 193, 323, 424, 559, 752
DdeI CTNAG 2 cut(s) 33, 1232
DpnI GATC 5 cut(s) 255, 471, 715, 812, 1201
DpnII GATC 5 cut(s) 253, 469, 713, 810, 1199
DrdI GACNNNNNNGTC 1 cut(s) 987
DseDI GACNNNNNNGTC 1 cut(s) 987
EaeI YGGCCR 1 cut(s) 1249
Eam1104I CTCTTC 1 cut(s) 1218
EarI CTCTTC 1 cut(s) 1218
EciI GGCGGA 1 cut(s) 362
Ecl136II GAGCTC 1 cut(s) 886
Eco24I GRGCYC 2 cut(s) 446, 888
Eco47I GGWCC 3 cut(s) 197, 572, 1211
Eco53kI GAGCTC 1 cut(s) 886
Eco57I CTGAAG 1 cut(s) 302
Eco72I CACGTG 1 cut(s) 369
EcoICRI GAGCTC 1 cut(s) 886
EcoNI CCTNNNNNAGG 1 cut(s) 204
EcoRI GAATTC 1 cut(s) 1018
EcoRII CCWGG 3 cut(s) 701, 1023, 1132
EcoT38I GRGCYC 2 cut(s) 446, 888
Esp3I CGTCTC 1 cut(s) 516
FaeI CATG 6 cut(s) 148, 164, 565, 662, 920, 1042
FalI AAGNNNNNCTT 2 cut(s) 1152, 1184
FaqI GGGAC 1 cut(s) 719
FatI CATG 6 cut(s) 144, 160, 561, 658, 916, 1038
FauI CCCGC 1 cut(s) 216
FblI GTMKAC 1 cut(s) 1264
Fnu4HI GCNGC 3 cut(s) 663, 1275, 1278
FokI GGATG 2 cut(s) 362, 1163
FriOI GRGCYC 2 cut(s) 446, 888
Fsp4HI GCNGC 3 cut(s) 663, 1275, 1278
FspBI CTAG 6 cut(s) 378, 669, 798, 860, 1268, 1281
FspI TGCGCA 1 cut(s) 297
GlaI GCGC 1 cut(s) 297
GluI GCNGC 3 cut(s) 663, 1275, 1278
GsaI CCCAGC 1 cut(s) 443
GsuI CTGGAG 3 cut(s) 68, 430, 540
HaeIII GGCC 2 cut(s) 1251, 1274
HapII CCGG 5 cut(s) 395, 482, 593, 792, 1196
HgaI GACGC 1 cut(s) 945
HhaI GCGC 1 cut(s) 298
Hin1I GRCGYC 1 cut(s) 956
Hin1II CATG 6 cut(s) 148, 164, 565, 662, 920, 1042
Hin6I GCGC 1 cut(s) 296
HinP1I GCGC 1 cut(s) 296
HincII GTYRAC 1 cut(s) 1030
HindII GTYRAC 1 cut(s) 1030
HinfI GANTC 4 cut(s) 99, 494, 731, 981
HpaII CCGG 5 cut(s) 395, 482, 593, 792, 1196
HphI GGTGA 2 cut(s) 1073, 1232
Hpy166II GTNNAC 6 cut(s) 572, 980, 1030, 1085, 1126, 1265
Hpy188I TCNGA 2 cut(s) 98, 289
Hpy188III TCNNGA 8 cut(s) 32, 447, 593, 612, 798, 1169, 1203, 1231
Hpy8I GTNNAC 6 cut(s) 572, 980, 1030, 1085, 1126, 1265
Hpy99I CGWCG 1 cut(s) 1219
HpyAV CCTTC 2 cut(s) 521, 534
HpyCH4III ACNGT 5 cut(s) 182, 335, 432, 871, 1192
HpyCH4IV ACGT 1 cut(s) 368
HpyF10VI GCNNNNNNNGC 4 cut(s) 155, 682, 883, 936
HpyF3I CTNAG 2 cut(s) 33, 1232
HpySE526I ACGT 1 cut(s) 368
Hsp92I GRCGYC 1 cut(s) 956
Hsp92II CATG 6 cut(s) 148, 164, 565, 662, 920, 1042
HspAI GCGC 1 cut(s) 296
Kpn2I TCCGGA 1 cut(s) 592
Kzo9I GATC 5 cut(s) 253, 469, 713, 810, 1199
LmnI GCTCC 5 cut(s) 49, 449, 549, 673, 1114
Lsp1109I GCAGC 2 cut(s) 674, 1289
LweI GCATC 2 cut(s) 146, 340
MaeI CTAG 6 cut(s) 378, 669, 798, 860, 1268, 1281
MaeII ACGT 1 cut(s) 368
MaeIII GTNAC 3 cut(s) 302, 397, 451
MalI GATC 5 cut(s) 255, 471, 715, 812, 1201
MboI GATC 5 cut(s) 253, 469, 713, 810, 1199
MboII GAAGA 5 cut(s) 619, 622, 718, 1065, 1235
MfeI CAATTG 1 cut(s) 231
MflI RGATCY 4 cut(s) 253, 469, 713, 1199
MhlI GDGCHC 3 cut(s) 446, 888, 1128
MlsI TGGCCA 1 cut(s) 1251
MluNI TGGCCA 1 cut(s) 1251
MlyI GAGTC 3 cut(s) 488, 725, 975
MnlI CCTC 6 cut(s) 104, 220, 780, 1006, 1057, 1264
Mox20I TGGCCA 1 cut(s) 1251
MroI TCCGGA 1 cut(s) 592
MscI TGGCCA 1 cut(s) 1251
MseI TTAA 2 cut(s) 363, 1287
MslI CAYNNNNRTG 2 cut(s) 461, 1121
Msp20I TGGCCA 1 cut(s) 1251
MspA1I CMGCKG 1 cut(s) 176
MspI CCGG 5 cut(s) 395, 482, 593, 792, 1196
MspR9I CCNGG 5 cut(s) 703, 792, 1025, 1134, 1197
MunI CAATTG 1 cut(s) 231
Mva1269I GAATGC 3 cut(s) 82, 242, 1051
MvaI CCWGG 3 cut(s) 703, 1025, 1134
MwoI GCNNNNNNNGC 4 cut(s) 155, 682, 883, 936
NciI CCSGG 2 cut(s) 792, 1197
NdeII GATC 5 cut(s) 253, 469, 713, 810, 1199
NlaIII CATG 6 cut(s) 148, 164, 565, 662, 920, 1042
NlaIV GGNNCC 3 cut(s) 445, 471, 715
NmeAIII GCCGAG 1 cut(s) 292
NmuCI GTSAC 2 cut(s) 302, 451
NsbI TGCGCA 1 cut(s) 297
NspI RCATGY 1 cut(s) 164
PcsI WCGNNNNNNNCGW 1 cut(s) 102
PctI GAATGC 3 cut(s) 82, 242, 1051
PfeI GAWTC 1 cut(s) 99
PfoI TCCNGGA 1 cut(s) 1195
PkrI GCNGC 3 cut(s) 664, 1276, 1279
Ple19I CGATCG 1 cut(s) 813
PleI GAGTC 3 cut(s) 488, 725, 975
PmaCI CACGTG 1 cut(s) 369
PmlI CACGTG 1 cut(s) 369
PpsI GAGTC 3 cut(s) 488, 725, 975
Ppu21I YACGTR 1 cut(s) 369
Psp124BI GAGCTC 1 cut(s) 888
Psp6I CCWGG 3 cut(s) 701, 1023, 1132
PspCI CACGTG 1 cut(s) 369
PspFI CCCAGC 1 cut(s) 439
PspGI CCWGG 3 cut(s) 701, 1023, 1132
PspN4I GGNNCC 3 cut(s) 445, 471, 715
PspPI GGNCC 3 cut(s) 197, 572, 1211
PstI CTGCAG 1 cut(s) 261
PsuI RGATCY 4 cut(s) 253, 469, 713, 1199
PvuI CGATCG 1 cut(s) 813
RsaI GTAC 7 cut(s) 71, 123, 194, 324, 425, 560, 753
RsaNI GTAC 7 cut(s) 70, 122, 193, 323, 424, 559, 752
RseI CAYNNNNRTG 2 cut(s) 461, 1121
SacI GAGCTC 1 cut(s) 888
SaqAI TTAA 2 cut(s) 363, 1287
SatI GCNGC 3 cut(s) 663, 1275, 1278
Sau3AI GATC 5 cut(s) 253, 469, 713, 810, 1199
Sau96I GGNCC 3 cut(s) 197, 572, 1211
SchI GAGTC 3 cut(s) 488, 725, 975
ScrFI CCNGG 5 cut(s) 703, 792, 1025, 1134, 1197
SduI GDGCHC 3 cut(s) 446, 888, 1128
SfaNI GCATC 2 cut(s) 146, 340
SfcI CTRYAG 2 cut(s) 257, 1301
SinI GGWCC 3 cut(s) 197, 572, 1211
SmiMI CAYNNNNRTG 2 cut(s) 461, 1121
SmlI CTYRAG 3 cut(s) 496, 969, 1169
SmoI CTYRAG 3 cut(s) 496, 969, 1169
SsiI CCGC 6 cut(s) 13, 174, 223, 347, 1098, 1275
SspMI CTAG 6 cut(s) 378, 669, 798, 860, 1268, 1281
SstI GAGCTC 1 cut(s) 888
StyD4I CCNGG 5 cut(s) 701, 790, 1023, 1132, 1195
TaaI ACNGT 5 cut(s) 182, 335, 432, 871, 1192
TaiI ACGT 1 cut(s) 371
TaqI TCGA 4 cut(s) 170, 492, 729, 813
TaqII GACCGA 1 cut(s) 500
TatI WGTACW 3 cut(s) 423, 558, 751
TauI GCSGC 1 cut(s) 1277
TfiI GAWTC 1 cut(s) 99
Tru1I TTAA 2 cut(s) 363, 1287
Tru9I TTAA 2 cut(s) 363, 1287
TscAI CASTG 3 cut(s) 305, 658, 853
TseFI GTSAC 2 cut(s) 302, 451
TseI GCWGC 2 cut(s) 662, 1277
Tsp45I GTSAC 2 cut(s) 302, 451
TspDTI ATGAA 1 cut(s) 578
TspGWI ACGGA 3 cut(s) 210, 845, 1203
TspRI CASTG 3 cut(s) 305, 658, 853
VneI GTGCAC 1 cut(s) 1124
VpaK11BI GGWCC 3 cut(s) 197, 572, 1211
XagI CCTNNNNNAGG 1 cut(s) 204
XapI RAATTY 3 cut(s) 786, 1018, 1141
XbaI TCTAGA 1 cut(s) 797
XceI RCATGY 1 cut(s) 164
XmiI GTMKAC 1 cut(s) 1264
XspI CTAG 6 cut(s) 378, 669, 798, 860, 1268, 1281
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.