Rw7G040880

Aminotransferase class I and II

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
Physical Location & Seq
Reverse (-)
63821542 .. 63828187
6646 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G040880.1

Sequence Viewer

Length: 1338 bp
ATGTCAATGTTAAATAGATCGATTAAAAAGAATAGTGGTTATTTATTTTTTGGACAAAAAAATTATAATTTGATAAAGCCTCAGAATTTGTCTAAGTGTCGTCATTGCACAAAAGTCTCGCGCAGTGTCAATATGGAGAACTTGCAAAACGAATATTTGTTTCCAGAGATATTCATGCGCGAGTTTCTGCATACTCAGAAGTACCCACATGCAAGAGTAATTAGACTTGGTATAGGTAATACTACAGAACCTATACCAGACATCATCACATCTGCTATGGCTGAGCATGCACATGCTCTATCAACAGTTGAAGGTTACAGAGGGTACGGAGCTGAGCAAGGCCACATGGCATTGAGAATGTCAATTGCACAAAGATTCTACAAGAATATGGGCATAGAAGGCAATGAGGTGTTTGTATCAGATGGTGCCCAATGTGACATTTCTCGCCTTCAAATGCTTTTAGGTTCCAACGTGACGGTAGCTGTGCAAGACCCTTCTTTCCCGGCATACATAGATTCTAGTGTCATTGCTGGTCGAGCTGGCAACTTTCAGGAGGAAACCGGGAAGTATAAGAATATTGTCTACCTCAATTGCAGACCTGAGAATAATTTTTTTCCTGACTTATCAACTGCTTCAAGGGCGGATCTCATATTTTTCTGCTCTCCAAACAATCCAACTGGAAATGCTGCATCATGGCATCAACTAAAGCAACTGGTGGAGTTTGCTAAAGCAAATGGATCAATCATAGTTTATGACTCCTCATATGCTGCTTATATATCAGATGGAAGCCCAAGATCAATTTATGAAATTCCTGGTGCCAGAGAGGTTGCAATTGAAATATCTTCCTTCTCCAAATTTGCGGGGTTCACAGGAGTCCGACTTGGTTGGACGGTTGTCCCTGAAGAGTTGTTGTATGCAAATGGATTTCCGGTCATAAAAGATTATAACCGCATAGTGTGCACCTGCTTCAATGGTGCATCAAATATAGCTCAGGCTGGAGGGCTAGCATGCCTTTCTGCAGAAGGTTATCAGGCTATAACAAATGTGGTTGACTACTACAAGGAGAATGCAAAGATCATTATCGACACATTCAGAGCACTTGGGTTGAAGGTGTATGGAGGCAAAAATGCTCCTTATATATGGGTACATTTTCCAGGGTTGAGTTCATGGGATGTGTTCAATCAAATTCTTGAAAAGACACACATAGTGACCGTACCAGGAAAGGGATTTGGTCCTGCAGGTGAAGGGTATATCAGAGTTGGTGCTTTTGGCCACAGAGAAACCATATTGGAAGCTTCAGCTAGGCTAAAGAATTTTTTTGTAACTGATAATATTTGA

Protein Analysis

445

Amino Acids

49.35

Weight (kDa)

8.28

Isoelectric Point (pI)

35.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aminotran_1_2 PF00155 73 - 432 1.5e-33 Aminotransferase class I and II
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 66, 945
AarI CACCTGC 2 cut(s) 971, 1229
Acc36I ACCTGC 2 cut(s) 971, 1229
AccB1I GGYRCC 2 cut(s) 425, 815
AccI GTMKAC 1 cut(s) 582
AccII CGCG 2 cut(s) 121, 180
AciI CCGC 3 cut(s) 641, 860, 949
AclWI GGATC 2 cut(s) 651, 745
AcoI YGGCCR 1 cut(s) 1270
AcsI RAATTY 5 cut(s) 85, 807, 854, 1185, 1312
AcuI CTGAAG 2 cut(s) 921, 1281
AdeI CACNNNGTG 1 cut(s) 1207
AfaI GTAC 4 cut(s) 203, 326, 1146, 1215
AfiI CCNNNNNNNGG 1 cut(s) 1223
AgsI TTSAA 8 cut(s) 311, 452, 636, 836, 970, 1108, 1180, 1193
AjnI CCWGG 3 cut(s) 811, 1153, 1216
AluBI AGCT 6 cut(s) 332, 482, 539, 989, 1295, 1301
AluI AGCT 6 cut(s) 332, 482, 539, 989, 1295, 1301
Alw21I GWGCWC 2 cut(s) 962, 1099
Alw26I GTCTC 1 cut(s) 121
Alw44I GTGCAC 1 cut(s) 958
AlwI GGATC 2 cut(s) 651, 745
AoxI GGCC 2 cut(s) 340, 1270
ApaLI GTGCAC 1 cut(s) 958
ApeKI GCWGC 2 cut(s) 686, 767
ApoI RAATTY 5 cut(s) 85, 807, 854, 1185, 1312
AspLEI GCGC 2 cut(s) 123, 180
AspS9I GGNCC 1 cut(s) 1232
AsuC2I CCSGG 2 cut(s) 503, 562
AsuHPI GGTGA 1 cut(s) 1253
AsuNHI GCTAGC 1 cut(s) 1003
AvaII GGWCC 1 cut(s) 1232
BaeGI GKGCMC 2 cut(s) 430, 962
BalI TGGCCA 1 cut(s) 1272
BanI GGYRCC 2 cut(s) 425, 815
Bbv12I GWGCWC 2 cut(s) 962, 1099
BbvI GCAGC 2 cut(s) 673, 754
BccI CCATC 2 cut(s) 416, 776
BciT130I CCWGG 3 cut(s) 813, 1155, 1218
BcnI CCSGG 2 cut(s) 503, 562
BcoDI GTCTC 1 cut(s) 121
BfaI CTAG 3 cut(s) 519, 1004, 1302
BfmI CTRYAG 3 cut(s) 243, 1017, 1236
BfuAI ACCTGC 2 cut(s) 971, 1229
BisI GCNGC 2 cut(s) 687, 768
BlpI GCTNAGC 2 cut(s) 282, 333
BlsI GCNGC 2 cut(s) 688, 769
Bme1390I CCNGG 5 cut(s) 503, 562, 813, 1155, 1218
Bme18I GGWCC 1 cut(s) 1232
BmgT120I GGNCC 1 cut(s) 1232
BmiI GGNNCC 3 cut(s) 427, 466, 817
BmrFI CCNGG 5 cut(s) 503, 562, 813, 1155, 1218
BmsI GCATC 3 cut(s) 698, 706, 986
BmtI GCTAGC 1 cut(s) 1007
BoxI GACNNNNGTC 1 cut(s) 893
BpmI CTGGAG 1 cut(s) 1017
Bpu10I CCTNAGC 1 cut(s) 990
Bpu1102I GCTNAGC 2 cut(s) 282, 333
BpuMI CCSGG 2 cut(s) 503, 562
Bsa29I ATCGAT 1 cut(s) 20
BsaBI GATNNNNATC 1 cut(s) 1079
BsaJI CCNNGG 1 cut(s) 1154
BsaWI WCCGGW 1 cut(s) 928
Bsc4I CCNNNNNNNGG 1 cut(s) 1223
Bse1I ACTGG 2 cut(s) 682, 717
Bse3DI GCAATG 3 cut(s) 103, 409, 525
Bse8I GATNNNNATC 1 cut(s) 1079
BseBI CCWGG 3 cut(s) 813, 1155, 1218
BseCI ATCGAT 1 cut(s) 20
BseDI CCNNGG 1 cut(s) 1154
BseGI GGATG 1 cut(s) 1177
BseJI GATNNNNATC 1 cut(s) 1079
BseLI CCNNNNNNNGG 1 cut(s) 1223
BseMI GCAATG 3 cut(s) 103, 409, 525
BseMII CTCAG 6 cut(s) 95, 209, 273, 324, 591, 1004
BseNI ACTGG 2 cut(s) 682, 717
BseRI GAGGAG 1 cut(s) 748
BseSI GKGCMC 2 cut(s) 430, 962
BseXI GCAGC 2 cut(s) 673, 754
Bsh1236I CGCG 2 cut(s) 121, 180
BshFI GGCC 2 cut(s) 342, 1272
BshNI GGYRCC 2 cut(s) 425, 815
BshVI ATCGAT 1 cut(s) 20
BsiHKAI GWGCWC 2 cut(s) 962, 1099
BsiSI CCGG 3 cut(s) 503, 561, 929
BslFI GGGAC 1 cut(s) 881
BslI CCNNNNNNNGG 1 cut(s) 1223
BsmAI GTCTC 1 cut(s) 121
BsmFI GGGAC 1 cut(s) 881
BsmI GAATGC 1 cut(s) 1072
BsnI GGCC 2 cut(s) 342, 1272
Bsp1286I GDGCHC 3 cut(s) 430, 962, 1099
Bsp143I GATC 5 cut(s) 17, 643, 737, 794, 1074
Bsp1720I GCTNAGC 2 cut(s) 282, 333
BspACI CCGC 3 cut(s) 641, 860, 949
BspANI GGCC 2 cut(s) 342, 1272
BspCNI CTCAG 6 cut(s) 94, 208, 274, 325, 592, 1003
BspDI ATCGAT 1 cut(s) 20
BspFNI CGCG 2 cut(s) 121, 180
BspLI GGNNCC 3 cut(s) 427, 466, 817
BspMAI CTGCAG 2 cut(s) 1021, 1240
BspMI ACCTGC 2 cut(s) 971, 1229
BspOI GCTAGC 1 cut(s) 1007
BspPI GGATC 2 cut(s) 651, 745
BspT107I GGYRCC 2 cut(s) 425, 815
BsrDI GCAATG 3 cut(s) 103, 409, 525
BsrI ACTGG 2 cut(s) 682, 717
BssECI CCNNGG 1 cut(s) 1154
BssMI GATC 5 cut(s) 17, 643, 737, 794, 1074
Bst2UI CCWGG 3 cut(s) 813, 1155, 1218
Bst4CI ACNGT 4 cut(s) 307, 478, 892, 1213
Bst6I CTCTTC 1 cut(s) 897
BstAPI GCANNNNNTGC 1 cut(s) 957
BstC8I GCNNGC 4 cut(s) 288, 541, 1005, 1009
BstDEI CTNAG 7 cut(s) 81, 93, 195, 282, 333, 600, 990
BstF5I GGATG 1 cut(s) 1177
BstFNI CGCG 2 cut(s) 121, 180
BstHHI GCGC 2 cut(s) 123, 180
BstKTI GATC 5 cut(s) 20, 646, 740, 797, 1077
BstMAI GTCTC 1 cut(s) 121
BstMBI GATC 5 cut(s) 17, 643, 737, 794, 1074
BstMWI GCNNNNNNNGC 5 cut(s) 287, 399, 536, 638, 957
BstNI CCWGG 3 cut(s) 813, 1155, 1218
BstNSI RCATGY 4 cut(s) 212, 290, 296, 1011
BstPAI GACNNNNGTC 1 cut(s) 893
BstSCI CCNGG 5 cut(s) 501, 560, 811, 1153, 1216
BstSFI CTRYAG 3 cut(s) 243, 1017, 1236
BstSLI GKGCMC 2 cut(s) 430, 962
BstUI CGCG 2 cut(s) 121, 180
BstV1I GCAGC 2 cut(s) 673, 754
BstX2I RGATCY 1 cut(s) 643
BstYI RGATCY 1 cut(s) 643
Bsu15I ATCGAT 1 cut(s) 20
BsuRI GGCC 2 cut(s) 342, 1272
BsuTUI ATCGAT 1 cut(s) 20
BtsCI GGATG 1 cut(s) 1177
BtsI GCAGTG 1 cut(s) 130
BtsIMutI CAGTG 1 cut(s) 130
BveI ACCTGC 2 cut(s) 971, 1229
Cac8I GCNNGC 4 cut(s) 288, 541, 1005, 1009
CfoI GCGC 2 cut(s) 123, 180
Cfr13I GGNCC 1 cut(s) 1232
ClaI ATCGAT 1 cut(s) 20
Csp6I GTAC 4 cut(s) 202, 325, 1145, 1214
CviAII CATG 8 cut(s) 175, 209, 287, 293, 346, 693, 1008, 1167
CviQI GTAC 4 cut(s) 202, 325, 1145, 1214
DdeI CTNAG 7 cut(s) 81, 93, 195, 282, 333, 600, 990
DpnI GATC 5 cut(s) 19, 645, 739, 796, 1076
DpnII GATC 5 cut(s) 17, 643, 737, 794, 1074
DraIII CACNNNGTG 1 cut(s) 1207
EaeI YGGCCR 1 cut(s) 1270
Eam1104I CTCTTC 1 cut(s) 897
EarI CTCTTC 1 cut(s) 897
EciI GGCGGA 1 cut(s) 656
Eco47I GGWCC 1 cut(s) 1232
Eco57I CTGAAG 2 cut(s) 921, 1281
EcoRII CCWGG 3 cut(s) 811, 1153, 1216
FaeI CATG 8 cut(s) 178, 212, 290, 296, 349, 696, 1011, 1170
FaqI GGGAC 1 cut(s) 881
FatI CATG 8 cut(s) 174, 208, 286, 292, 345, 692, 1007, 1166
FauI CCCGC 1 cut(s) 853
FauNDI CATATG 1 cut(s) 763
FblI GTMKAC 1 cut(s) 582
Fnu4HI GCNGC 2 cut(s) 687, 768
FokI GGATG 1 cut(s) 1184
Fsp4HI GCNGC 2 cut(s) 687, 768
FspBI CTAG 3 cut(s) 519, 1004, 1302
GlaI GCGC 2 cut(s) 122, 179
GluI GCNGC 2 cut(s) 687, 768
GsuI CTGGAG 1 cut(s) 1017
HaeIII GGCC 2 cut(s) 342, 1272
HapII CCGG 3 cut(s) 503, 561, 929
HhaI GCGC 2 cut(s) 123, 180
Hin1II CATG 8 cut(s) 178, 212, 290, 296, 349, 696, 1011, 1170
Hin6I GCGC 2 cut(s) 121, 178
HinP1I GCGC 2 cut(s) 121, 178
HincII GTYRAC 1 cut(s) 1051
HindII GTYRAC 1 cut(s) 1051
HindIII AAGCTT 1 cut(s) 1293
HinfI GANTC 4 cut(s) 375, 515, 755, 873
HpaII CCGG 3 cut(s) 503, 561, 929
HphI GGTGA 1 cut(s) 1253
Hpy166II GTNNAC 4 cut(s) 583, 867, 960, 1051
Hpy188I TCNGA 7 cut(s) 84, 198, 421, 781, 878, 1094, 1256
Hpy188III TCNNGA 4 cut(s) 164, 551, 617, 1190
Hpy8I GTNNAC 4 cut(s) 583, 867, 960, 1051
HpyAV CCTTC 8 cut(s) 305, 392, 458, 504, 856, 1016, 1102, 1238
HpyCH4III ACNGT 4 cut(s) 307, 478, 892, 1213
HpyCH4IV ACGT 1 cut(s) 471
HpyF10VI GCNNNNNNNGC 5 cut(s) 287, 399, 536, 638, 957
HpyF3I CTNAG 7 cut(s) 81, 93, 195, 282, 333, 600, 990
HpySE526I ACGT 1 cut(s) 471
Hsp92II CATG 8 cut(s) 178, 212, 290, 296, 349, 696, 1011, 1170
HspAI GCGC 2 cut(s) 121, 178
Kzo9I GATC 5 cut(s) 17, 643, 737, 794, 1074
LmnI GCTCC 2 cut(s) 329, 1135
Lsp1109I GCAGC 2 cut(s) 673, 754
LweI GCATC 3 cut(s) 698, 706, 986
MaeI CTAG 3 cut(s) 519, 1004, 1302
MaeII ACGT 1 cut(s) 471
MaeIII GTNAC 5 cut(s) 314, 434, 472, 1207, 1321
MalI GATC 5 cut(s) 19, 645, 739, 796, 1076
MboI GATC 5 cut(s) 17, 643, 737, 794, 1074
MboII GAAGA 2 cut(s) 834, 914
MfeI CAATTG 3 cut(s) 363, 589, 831
MflI RGATCY 1 cut(s) 643
MhlI GDGCHC 3 cut(s) 430, 962, 1099
MlsI TGGCCA 1 cut(s) 1272
MluNI TGGCCA 1 cut(s) 1272
MlyI GAGTC 2 cut(s) 749, 882
MmeI TCCRAC 4 cut(s) 492, 698, 866, 901
MnlI CCTC 9 cut(s) 90, 314, 400, 547, 596, 769, 817, 992, 1112
Mox20I TGGCCA 1 cut(s) 1272
MscI TGGCCA 1 cut(s) 1272
MseI TTAA 2 cut(s) 11, 24
MslI CAYNNNNRTG 1 cut(s) 291
Msp20I TGGCCA 1 cut(s) 1272
MspI CCGG 3 cut(s) 503, 561, 929
MspR9I CCNGG 5 cut(s) 503, 562, 813, 1155, 1218
MunI CAATTG 3 cut(s) 363, 589, 831
Mva1269I GAATGC 1 cut(s) 1072
MvaI CCWGG 3 cut(s) 813, 1155, 1218
MvnI CGCG 2 cut(s) 121, 180
MwoI GCNNNNNNNGC 5 cut(s) 287, 399, 536, 638, 957
NciI CCSGG 2 cut(s) 503, 562
NdeI CATATG 1 cut(s) 763
NdeII GATC 5 cut(s) 17, 643, 737, 794, 1074
NheI GCTAGC 1 cut(s) 1003
NlaIII CATG 8 cut(s) 178, 212, 290, 296, 349, 696, 1011, 1170
NlaIV GGNNCC 3 cut(s) 427, 466, 817
NmuCI GTSAC 3 cut(s) 434, 472, 1207
NspI RCATGY 4 cut(s) 212, 290, 296, 1011
PaeI GCATGC 2 cut(s) 290, 1011
PaqCI CACCTGC 2 cut(s) 971, 1229
PctI GAATGC 1 cut(s) 1072
PfeI GAWTC 2 cut(s) 375, 515
PkrI GCNGC 2 cut(s) 688, 769
PleI GAGTC 2 cut(s) 749, 881
PpsI GAGTC 2 cut(s) 749, 881
PshAI GACNNNNGTC 1 cut(s) 893
PsiI TTATAA 2 cut(s) 66, 945
Psp6I CCWGG 3 cut(s) 811, 1153, 1216
PspGI CCWGG 3 cut(s) 811, 1153, 1216
PspN4I GGNNCC 3 cut(s) 427, 466, 817
PspPI GGNCC 1 cut(s) 1232
PstI CTGCAG 2 cut(s) 1021, 1240
PsuI RGATCY 1 cut(s) 643
RsaI GTAC 4 cut(s) 203, 326, 1146, 1215
RsaNI GTAC 4 cut(s) 202, 325, 1145, 1214
RseI CAYNNNNRTG 1 cut(s) 291
SaqAI TTAA 2 cut(s) 11, 24
SatI GCNGC 2 cut(s) 687, 768
Sau3AI GATC 5 cut(s) 17, 643, 737, 794, 1074
Sau96I GGNCC 1 cut(s) 1232
SbfI CCTGCAGG 1 cut(s) 1240
SchI GAGTC 2 cut(s) 749, 882
ScrFI CCNGG 5 cut(s) 503, 562, 813, 1155, 1218
SdaI CCTGCAGG 1 cut(s) 1240
SduI GDGCHC 3 cut(s) 430, 962, 1099
SfaNI GCATC 3 cut(s) 698, 706, 986
SfcI CTRYAG 3 cut(s) 243, 1017, 1236
SinI GGWCC 1 cut(s) 1232
SmiMI CAYNNNNRTG 1 cut(s) 291
SphI GCATGC 2 cut(s) 290, 1011
Sse8387I CCTGCAGG 1 cut(s) 1240
SsiI CCGC 3 cut(s) 641, 860, 949
SspI AATATT 3 cut(s) 155, 577, 1333
SspMI CTAG 3 cut(s) 519, 1004, 1302
StyD4I CCNGG 5 cut(s) 501, 560, 811, 1153, 1216
TaaI ACNGT 4 cut(s) 307, 478, 892, 1213
TaiI ACGT 1 cut(s) 474
TaqI TCGA 3 cut(s) 20, 535, 1083
TfiI GAWTC 2 cut(s) 375, 515
Tru1I TTAA 2 cut(s) 11, 24
Tru9I TTAA 2 cut(s) 11, 24
TscAI CASTG 1 cut(s) 130
TseFI GTSAC 3 cut(s) 434, 472, 1207
TseI GCWGC 2 cut(s) 686, 767
Tsp45I GTSAC 3 cut(s) 434, 472, 1207
TspDTI ATGAA 3 cut(s) 163, 819, 1155
TspGWI ACGGA 1 cut(s) 342
TspRI CASTG 1 cut(s) 130
VneI GTGCAC 1 cut(s) 958
VpaK11BI GGWCC 1 cut(s) 1232
XapI RAATTY 5 cut(s) 85, 807, 854, 1185, 1312
XceI RCATGY 4 cut(s) 212, 290, 296, 1011
XmiI GTMKAC 1 cut(s) 582
XspI CTAG 3 cut(s) 519, 1004, 1302
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.