Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002676.1

Orthogroup ID

OG0003005

Physical Location & Seq

Genomic Coordinates Forward (+)

162032 .. 165649

Gene Structure 3618 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002676.1_g000021.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1164 bp

atgcgcgagtttctgcatactcagaagtacccacatgcaagagtaattagacttggtataggtaatactacagaacctataccagacatcatcacatctgctatggctgagcatgcacatgctctatcaacagttgaaggttacagagggtacggagctgagcaaggccacatggcattgagaatgtcaattgcacaaagattctacaagaatatgggcatagaaggcaatgaggtgtttgtatcagatggtgcccaatgtgacatttctcgccttcaaatgcttttaggttccaacgtgacggtagctgtgcaagacccttctttcccggcatacatagattctagtgtcattgctggtcgagctggcaactttcaggaggaaaccgggaagtataagaatattgtctacctcaattgcagacctgagaataatttttttcctgacttatcaactgcttcaagggcggatctcatatttttctgctctccaaacaatccaactggaaatgctgcatcatggcatcaactaaagcaactggtggagtttgctaaagcaaatggatcaatcatagtttatgactcctcatatgctgcttatatatcagatggaagcccaagatcaatttatgaaattcctggtgccagagaggttgcaattgaaatatcttccttctccaaatttgcggggttcacaggagtccgacttggttggacggttgtccctgaagagttgttgtatgcaaatggatttccggtcataaaagattataaccgcatagtgtgcacctgcttcaatggtgcatcaaatatagctcaggctggagggctagcatgcctttctgcagaaggttatcaggctataacaaatgtggttgactactacaaggagaatgcaaaaatcattatcgacacattcagagcacttgggttgaaggtgtatggaggcaaaaatgctccttatatatgggtacattttccagggttgagttcatgggatgtgttcaatcaaattcttgaaaagacacacatagtgaccgtaccaggaaagggatttggtcctgcaggtgaagggtatatcagagttggtgcttttggccacagagaaaccatattggaagcttcagcaaggctaaagaatttttttgtaactgataatatttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002376 GO:0003674 GO:0003824 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008483 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009607 GO:0009627 GO:0009719 GO:0009725 GO:0009735 GO:0009751 GO:0009814 GO:0009862 GO:0009863 GO:0009987 GO:0010033 GO:0010285 GO:0014070 GO:0016740 GO:0016769 GO:0023052 GO:0032870 GO:0035690 GO:0042221 GO:0042493 GO:0043167 GO:0043169 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0046677 GO:0046872 GO:0046914 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071407 GO:0071446 GO:0071495 GO:0098542 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko00300 ko01100 ko01110 ko01130 ko01230 map00300 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

Aminotran_1_2

Protein Analysis

387

Amino Acids

42.47

Weight (kDa)

6.32

Isoelectric Point (pI)

32.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003005)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G13810
fragaria_vesca	FvH4_5g30860 FvH4_5g30860 FvH4_5g38260 FvH4_5g38260 FvH4_5g38260 FvH4_5g38260 FvH4_5g38260
malus_domestica	MD08G1221500.v1.1 MD15G1412200.v1.1 MD15G1412400.v1.1
prunus_persica	Prupe.1G509100_v2.0.a1 Prupe.1G509100_v2.0.a1 Prupe.1G509500_v2.0.a1 Prupe.1G558600_v2.0.a1
pyrus_communis	pycom08g19210 pycom15g36710
rosa_chinensis	RchiOBHm_Chr7g0226031 RchiOBHm_Chr7g0240251
rosa_laevigata	RLG00000000691 RLG00000001773
rosa_multiflora	Rmu_sc0002676.1_g000021 Rmu_sc0004200.1_g000015
rosa_roxburghii	Rroxscaffold_3G00220280 Rroxscaffold_3G00233310
rosa_rugosa	Rorug07G0234200 Rorug07G0234300 Rorug07G0334400
rosa_samantha	Rh7AG369100 Rh7AG488400 Rh7BG368200 Rh7BG461300 Rh7CG387600 Rh7CG504500 Rh7DG379300 Rh7DG472600
rosa_wichuraiana	Rw0G020940 Rw7G040880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	771
AarI	CACCTGC	2 cut(s)	797, 1055
Acc36I	ACCTGC	2 cut(s)	797, 1055
AccB1I	GGYRCC	2 cut(s)	251, 641
AccI	GTMKAC	1 cut(s)	408
AccII	CGCG	1 cut(s)	6
AciI	CCGC	3 cut(s)	467, 686, 775
AclWI	GGATC	2 cut(s)	477, 571
AcoI	YGGCCR	1 cut(s)	1096
AcsI	RAATTY	4 cut(s)	633, 680, 1011, 1138
AcuI	CTGAAG	2 cut(s)	747, 1107
AdeI	CACNNNGTG	1 cut(s)	1033
AfaI	GTAC	4 cut(s)	29, 152, 972, 1041
AfiI	CCNNNNNNNGG	1 cut(s)	1049
AgsI	TTSAA	8 cut(s)	137, 278, 462, 662, 796, 934, 1006, 1019
AjnI	CCWGG	3 cut(s)	637, 979, 1042
AluBI	AGCT	5 cut(s)	158, 308, 365, 815, 1121
AluI	AGCT	5 cut(s)	158, 308, 365, 815, 1121
Alw21I	GWGCWC	2 cut(s)	788, 925
Alw44I	GTGCAC	1 cut(s)	784
AlwI	GGATC	2 cut(s)	477, 571
AoxI	GGCC	2 cut(s)	166, 1096
ApaLI	GTGCAC	1 cut(s)	784
ApeKI	GCWGC	2 cut(s)	512, 593
ApoI	RAATTY	4 cut(s)	633, 680, 1011, 1138
AspLEI	GCGC	1 cut(s)	6
AspS9I	GGNCC	1 cut(s)	1058
AsuC2I	CCSGG	2 cut(s)	329, 388
AsuHPI	GGTGA	1 cut(s)	1079
AsuNHI	GCTAGC	1 cut(s)	829
AvaII	GGWCC	1 cut(s)	1058
BaeGI	GKGCMC	2 cut(s)	256, 788
BalI	TGGCCA	1 cut(s)	1098
BanI	GGYRCC	2 cut(s)	251, 641
Bbv12I	GWGCWC	2 cut(s)	788, 925
BbvI	GCAGC	2 cut(s)	499, 580
BccI	CCATC	2 cut(s)	242, 602
BciT130I	CCWGG	3 cut(s)	639, 981, 1044
BcnI	CCSGG	2 cut(s)	329, 388
BfaI	CTAG	2 cut(s)	345, 830
BfmI	CTRYAG	3 cut(s)	69, 843, 1062
BfuAI	ACCTGC	2 cut(s)	797, 1055
BisI	GCNGC	2 cut(s)	513, 594
BlpI	GCTNAGC	2 cut(s)	108, 159
BlsI	GCNGC	2 cut(s)	514, 595
Bme1390I	CCNGG	5 cut(s)	329, 388, 639, 981, 1044
Bme18I	GGWCC	1 cut(s)	1058
BmgT120I	GGNCC	1 cut(s)	1058
BmiI	GGNNCC	3 cut(s)	253, 292, 643
BmrFI	CCNGG	5 cut(s)	329, 388, 639, 981, 1044
BmsI	GCATC	3 cut(s)	524, 532, 812
BmtI	GCTAGC	1 cut(s)	833
BoxI	GACNNNNGTC	1 cut(s)	719
BpmI	CTGGAG	1 cut(s)	843
Bpu10I	CCTNAGC	1 cut(s)	816
Bpu1102I	GCTNAGC	2 cut(s)	108, 159
BpuMI	CCSGG	2 cut(s)	329, 388
BsaJI	CCNNGG	1 cut(s)	980
BsaWI	WCCGGW	1 cut(s)	754
Bsc4I	CCNNNNNNNGG	1 cut(s)	1049
Bse1I	ACTGG	2 cut(s)	508, 543
Bse3DI	GCAATG	2 cut(s)	235, 351
BseBI	CCWGG	3 cut(s)	639, 981, 1044
BseDI	CCNNGG	1 cut(s)	980
BseGI	GGATG	1 cut(s)	1003
BseLI	CCNNNNNNNGG	1 cut(s)	1049
BseMI	GCAATG	2 cut(s)	235, 351
BseMII	CTCAG	5 cut(s)	35, 99, 150, 417, 830
BseNI	ACTGG	2 cut(s)	508, 543
BseRI	GAGGAG	1 cut(s)	574
BseSI	GKGCMC	2 cut(s)	256, 788
BseXI	GCAGC	2 cut(s)	499, 580
Bsh1236I	CGCG	1 cut(s)	6
BshFI	GGCC	2 cut(s)	168, 1098
BshNI	GGYRCC	2 cut(s)	251, 641
BsiHKAI	GWGCWC	2 cut(s)	788, 925
BsiSI	CCGG	3 cut(s)	329, 387, 755
BslFI	GGGAC	1 cut(s)	707
BslI	CCNNNNNNNGG	1 cut(s)	1049
BsmFI	GGGAC	1 cut(s)	707
BsmI	GAATGC	1 cut(s)	898
BsnI	GGCC	2 cut(s)	168, 1098
Bsp1286I	GDGCHC	3 cut(s)	256, 788, 925
Bsp143I	GATC	3 cut(s)	469, 563, 620
Bsp1720I	GCTNAGC	2 cut(s)	108, 159
BspACI	CCGC	3 cut(s)	467, 686, 775
BspANI	GGCC	2 cut(s)	168, 1098
BspCNI	CTCAG	5 cut(s)	34, 100, 151, 418, 829
BspFNI	CGCG	1 cut(s)	6
BspLI	GGNNCC	3 cut(s)	253, 292, 643
BspMAI	CTGCAG	2 cut(s)	847, 1066
BspMI	ACCTGC	2 cut(s)	797, 1055
BspOI	GCTAGC	1 cut(s)	833
BspPI	GGATC	2 cut(s)	477, 571
BspT107I	GGYRCC	2 cut(s)	251, 641
BsrDI	GCAATG	2 cut(s)	235, 351
BsrI	ACTGG	2 cut(s)	508, 543
BssECI	CCNNGG	1 cut(s)	980
BssMI	GATC	3 cut(s)	469, 563, 620
Bst2UI	CCWGG	3 cut(s)	639, 981, 1044
Bst4CI	ACNGT	4 cut(s)	133, 304, 718, 1039
Bst6I	CTCTTC	1 cut(s)	723
BstAPI	GCANNNNNTGC	1 cut(s)	783
BstC8I	GCNNGC	4 cut(s)	114, 367, 831, 835
BstDEI	CTNAG	5 cut(s)	21, 108, 159, 426, 816
BstF5I	GGATG	1 cut(s)	1003
BstFNI	CGCG	1 cut(s)	6
BstHHI	GCGC	1 cut(s)	6
BstKTI	GATC	3 cut(s)	472, 566, 623
BstMBI	GATC	3 cut(s)	469, 563, 620
BstMWI	GCNNNNNNNGC	5 cut(s)	113, 225, 362, 464, 783
BstNI	CCWGG	3 cut(s)	639, 981, 1044
BstNSI	RCATGY	4 cut(s)	38, 116, 122, 837
BstPAI	GACNNNNGTC	1 cut(s)	719
BstSCI	CCNGG	5 cut(s)	327, 386, 637, 979, 1042
BstSFI	CTRYAG	3 cut(s)	69, 843, 1062
BstSLI	GKGCMC	2 cut(s)	256, 788
BstUI	CGCG	1 cut(s)	6
BstV1I	GCAGC	2 cut(s)	499, 580
BstX2I	RGATCY	1 cut(s)	469
BstYI	RGATCY	1 cut(s)	469
BsuRI	GGCC	2 cut(s)	168, 1098
BtsCI	GGATG	1 cut(s)	1003
BveI	ACCTGC	2 cut(s)	797, 1055
Cac8I	GCNNGC	4 cut(s)	114, 367, 831, 835
CfoI	GCGC	1 cut(s)	6
Cfr13I	GGNCC	1 cut(s)	1058
Csp6I	GTAC	4 cut(s)	28, 151, 971, 1040
CviAII	CATG	7 cut(s)	35, 113, 119, 172, 519, 834, 993
CviQI	GTAC	4 cut(s)	28, 151, 971, 1040
DdeI	CTNAG	5 cut(s)	21, 108, 159, 426, 816
DpnI	GATC	3 cut(s)	471, 565, 622
DpnII	GATC	3 cut(s)	469, 563, 620
DraIII	CACNNNGTG	1 cut(s)	1033
EaeI	YGGCCR	1 cut(s)	1096
Eam1104I	CTCTTC	1 cut(s)	723
EarI	CTCTTC	1 cut(s)	723
EciI	GGCGGA	1 cut(s)	482
Eco47I	GGWCC	1 cut(s)	1058
Eco57I	CTGAAG	2 cut(s)	747, 1107
EcoRII	CCWGG	3 cut(s)	637, 979, 1042
FaeI	CATG	7 cut(s)	38, 116, 122, 175, 522, 837, 996
FaqI	GGGAC	1 cut(s)	707
FatI	CATG	7 cut(s)	34, 112, 118, 171, 518, 833, 992
FauI	CCCGC	1 cut(s)	679
FauNDI	CATATG	1 cut(s)	589
FblI	GTMKAC	1 cut(s)	408
Fnu4HI	GCNGC	2 cut(s)	513, 594
FokI	GGATG	1 cut(s)	1010
Fsp4HI	GCNGC	2 cut(s)	513, 594
FspBI	CTAG	2 cut(s)	345, 830
GlaI	GCGC	1 cut(s)	5
GluI	GCNGC	2 cut(s)	513, 594
GsuI	CTGGAG	1 cut(s)	843
HaeIII	GGCC	2 cut(s)	168, 1098
HapII	CCGG	3 cut(s)	329, 387, 755
HhaI	GCGC	1 cut(s)	6
Hin1II	CATG	7 cut(s)	38, 116, 122, 175, 522, 837, 996
Hin6I	GCGC	1 cut(s)	4
HinP1I	GCGC	1 cut(s)	4
HincII	GTYRAC	1 cut(s)	877
HindII	GTYRAC	1 cut(s)	877
HindIII	AAGCTT	1 cut(s)	1119
HinfI	GANTC	4 cut(s)	201, 341, 581, 699
HpaII	CCGG	3 cut(s)	329, 387, 755
HphI	GGTGA	1 cut(s)	1079
Hpy166II	GTNNAC	4 cut(s)	409, 693, 786, 877
Hpy188I	TCNGA	6 cut(s)	24, 247, 607, 704, 920, 1082
Hpy188III	TCNNGA	3 cut(s)	377, 443, 1016
Hpy8I	GTNNAC	4 cut(s)	409, 693, 786, 877
HpyAV	CCTTC	8 cut(s)	131, 218, 284, 330, 682, 842, 928, 1064
HpyCH4III	ACNGT	4 cut(s)	133, 304, 718, 1039
HpyCH4IV	ACGT	1 cut(s)	297
HpyF10VI	GCNNNNNNNGC	5 cut(s)	113, 225, 362, 464, 783
HpyF3I	CTNAG	5 cut(s)	21, 108, 159, 426, 816
HpySE526I	ACGT	1 cut(s)	297
Hsp92II	CATG	7 cut(s)	38, 116, 122, 175, 522, 837, 996
HspAI	GCGC	1 cut(s)	4
Kzo9I	GATC	3 cut(s)	469, 563, 620
LmnI	GCTCC	2 cut(s)	155, 961
Lsp1109I	GCAGC	2 cut(s)	499, 580
LweI	GCATC	3 cut(s)	524, 532, 812
MaeI	CTAG	2 cut(s)	345, 830
MaeII	ACGT	1 cut(s)	297
MaeIII	GTNAC	5 cut(s)	140, 260, 298, 1033, 1147
MalI	GATC	3 cut(s)	471, 565, 622
MboI	GATC	3 cut(s)	469, 563, 620
MboII	GAAGA	2 cut(s)	660, 740
MfeI	CAATTG	3 cut(s)	189, 415, 657
MflI	RGATCY	1 cut(s)	469
MhlI	GDGCHC	3 cut(s)	256, 788, 925
MlsI	TGGCCA	1 cut(s)	1098
MluNI	TGGCCA	1 cut(s)	1098
MlyI	GAGTC	2 cut(s)	575, 708
MmeI	TCCRAC	4 cut(s)	318, 524, 692, 727
MnlI	CCTC	8 cut(s)	140, 226, 373, 422, 595, 643, 818, 938
Mox20I	TGGCCA	1 cut(s)	1098
MscI	TGGCCA	1 cut(s)	1098
MslI	CAYNNNNRTG	1 cut(s)	117
Msp20I	TGGCCA	1 cut(s)	1098
MspI	CCGG	3 cut(s)	329, 387, 755
MspR9I	CCNGG	5 cut(s)	329, 388, 639, 981, 1044
MunI	CAATTG	3 cut(s)	189, 415, 657
Mva1269I	GAATGC	1 cut(s)	898
MvaI	CCWGG	3 cut(s)	639, 981, 1044
MvnI	CGCG	1 cut(s)	6
MwoI	GCNNNNNNNGC	5 cut(s)	113, 225, 362, 464, 783
NciI	CCSGG	2 cut(s)	329, 388
NdeI	CATATG	1 cut(s)	589
NdeII	GATC	3 cut(s)	469, 563, 620
NheI	GCTAGC	1 cut(s)	829
NlaIII	CATG	7 cut(s)	38, 116, 122, 175, 522, 837, 996
NlaIV	GGNNCC	3 cut(s)	253, 292, 643
NmuCI	GTSAC	3 cut(s)	260, 298, 1033
NspI	RCATGY	4 cut(s)	38, 116, 122, 837
PaeI	GCATGC	2 cut(s)	116, 837
PaqCI	CACCTGC	2 cut(s)	797, 1055
PctI	GAATGC	1 cut(s)	898
PfeI	GAWTC	2 cut(s)	201, 341
PkrI	GCNGC	2 cut(s)	514, 595
PleI	GAGTC	2 cut(s)	575, 707
PpsI	GAGTC	2 cut(s)	575, 707
PshAI	GACNNNNGTC	1 cut(s)	719
PsiI	TTATAA	1 cut(s)	771
Psp6I	CCWGG	3 cut(s)	637, 979, 1042
PspGI	CCWGG	3 cut(s)	637, 979, 1042
PspN4I	GGNNCC	3 cut(s)	253, 292, 643
PspPI	GGNCC	1 cut(s)	1058
PstI	CTGCAG	2 cut(s)	847, 1066
PsuI	RGATCY	1 cut(s)	469
RsaI	GTAC	4 cut(s)	29, 152, 972, 1041
RsaNI	GTAC	4 cut(s)	28, 151, 971, 1040
RseI	CAYNNNNRTG	1 cut(s)	117
SatI	GCNGC	2 cut(s)	513, 594
Sau3AI	GATC	3 cut(s)	469, 563, 620
Sau96I	GGNCC	1 cut(s)	1058
SbfI	CCTGCAGG	1 cut(s)	1066
SchI	GAGTC	2 cut(s)	575, 708
ScrFI	CCNGG	5 cut(s)	329, 388, 639, 981, 1044
SdaI	CCTGCAGG	1 cut(s)	1066
SduI	GDGCHC	3 cut(s)	256, 788, 925
SfaNI	GCATC	3 cut(s)	524, 532, 812
SfcI	CTRYAG	3 cut(s)	69, 843, 1062
SinI	GGWCC	1 cut(s)	1058
SmiMI	CAYNNNNRTG	1 cut(s)	117
SphI	GCATGC	2 cut(s)	116, 837
Sse8387I	CCTGCAGG	1 cut(s)	1066
SsiI	CCGC	3 cut(s)	467, 686, 775
SspI	AATATT	2 cut(s)	403, 1159
SspMI	CTAG	2 cut(s)	345, 830
StyD4I	CCNGG	5 cut(s)	327, 386, 637, 979, 1042
TaaI	ACNGT	4 cut(s)	133, 304, 718, 1039
TaiI	ACGT	1 cut(s)	300
TaqI	TCGA	2 cut(s)	361, 909
TfiI	GAWTC	2 cut(s)	201, 341
TseFI	GTSAC	3 cut(s)	260, 298, 1033
TseI	GCWGC	2 cut(s)	512, 593
Tsp45I	GTSAC	3 cut(s)	260, 298, 1033
TspDTI	ATGAA	2 cut(s)	645, 981
TspGWI	ACGGA	1 cut(s)	168
VneI	GTGCAC	1 cut(s)	784
VpaK11BI	GGWCC	1 cut(s)	1058
XapI	RAATTY	4 cut(s)	633, 680, 1011, 1138
XceI	RCATGY	4 cut(s)	38, 116, 122, 837
XmiI	GTMKAC	1 cut(s)	408
XspI	CTAG	2 cut(s)	345, 830

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.