Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0003005

Physical Location & Seq

Genomic Coordinates Forward (+)

41985338 .. 41986561

Gene Structure 1224 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G509500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGGATTGGCTCTTGTGCCTACAGAAACAAGGCATATATATTATAGATTCTACTGTCATTGCCGGTCGAGCTGGTAGGTTTCAAGAGGAAACTGGGAAGTATAAGAACATTGTGTACCTGAACTGCAGGCCTGAGAATAATTTTTTTCCTGATCTATCAATTGCTTCTAGGGCGGATATCGTATTTTTCTGCTCTCCAAACAATCGAACTGGCAATGCTGCATCACAGCAGCAACTAAAGCAACTGGTGGAGTTTGCAAAAGCAAACGGATCAATAATAGTTTATGACTCCTCCTATGCTGCTTATATATCTGATGACAGCCCGAGATCGATTTATGAAATTCCTGGGGCCAGAGAGGTTGCAATTGAAGTTTCATCCTTCTCCAAATTTGCTGGGTTCACAGGGGTCCGCCTCGGATGGACGGTTGTCCCTGATGAGTTGTTGTATGCAAATGGATTTCCTGTCATAAAGGACTGTAACCGCATAGTGCGCACCTGCTTCAATGGTGCATCAAATATTGCCCAGGCCGGAGGGCTGGCATGCCTTTCTGCAGAAGGTTACCAGGCCATAACCACAGTGGTTGACTACTACAAGGAAAATGCAAAAATAATTGTGGACACATTCAGATCACCTGGGTTGAAGGTGTATGGTGGCAAGAATGCACCTTATATATGGGTACATTTTCCAGGGTTGAGTTCTTGGGATGTATTCAATGAAATTCTTGAAAAGACAGACATAGTGACCATACCAGGAAAGGGATTTGGTCCTGGAGGTGAAGAGTACATCAGAGTTGGTGCTTTTGCCCACAGAGAATATATTGGGGGCTTCAAAAAGGCTAAAAACTCTTTTTTAACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002376 GO:0003674 GO:0003824 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008483 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009607 GO:0009627 GO:0009719 GO:0009725 GO:0009735 GO:0009751 GO:0009814 GO:0009862 GO:0009863 GO:0009987 GO:0010033 GO:0010285 GO:0014070 GO:0016740 GO:0016769 GO:0023052 GO:0032870 GO:0035690 GO:0042221 GO:0042493 GO:0043167 GO:0043169 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0046677 GO:0046872 GO:0046914 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071407 GO:0071446 GO:0071495 GO:0098542 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko00300 ko01100 ko01110 ko01130 ko01230 map00300 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

Aminotran_1_2

Protein Analysis

286

Amino Acids

31.44

Weight (kDa)

7.53

Isoelectric Point (pI)

34.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003005)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G13810
fragaria_vesca	FvH4_5g30860 FvH4_5g30860 FvH4_5g38260 FvH4_5g38260 FvH4_5g38260 FvH4_5g38260 FvH4_5g38260
malus_domestica	MD08G1221500.v1.1 MD15G1412200.v1.1 MD15G1412400.v1.1
prunus_persica	Prupe.1G509100_v2.0.a1 Prupe.1G509100_v2.0.a1 Prupe.1G509500_v2.0.a1 Prupe.1G558600_v2.0.a1
pyrus_communis	pycom08g19210 pycom15g36710
rosa_chinensis	RchiOBHm_Chr7g0226031 RchiOBHm_Chr7g0240251
rosa_laevigata	RLG00000000691 RLG00000001773
rosa_multiflora	Rmu_sc0002676.1_g000021 Rmu_sc0004200.1_g000015
rosa_roxburghii	Rroxscaffold_3G00220280 Rroxscaffold_3G00233310
rosa_rugosa	Rorug07G0234200 Rorug07G0234300 Rorug07G0334400
rosa_samantha	Rh7AG369100 Rh7AG488400 Rh7BG368200 Rh7BG461300 Rh7CG387600 Rh7CG504500 Rh7DG379300 Rh7DG472600
rosa_wichuraiana	Rw0G020940 Rw7G040880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	503
Acc16I	TGCGCA	1 cut(s)	491
Acc36I	ACCTGC	1 cut(s)	503
AciI	CCGC	3 cut(s)	173, 409, 481
AclWI	GGATC	1 cut(s)	277
AcsI	RAATTY	3 cut(s)	339, 386, 717
AfaI	GTAC	3 cut(s)	116, 678, 782
AfiI	CCNNNNNNNGG	1 cut(s)	755
AgsI	TTSAA	7 cut(s)	83, 368, 502, 640, 712, 725, 829
AjnI	CCWGG	7 cut(s)	343, 522, 561, 631, 685, 748, 766
AluBI	AGCT	1 cut(s)	71
AluI	AGCT	1 cut(s)	71
AlwI	GGATC	1 cut(s)	277
Ama87I	CYCGRG	1 cut(s)	322
AoxI	GGCC	4 cut(s)	128, 348, 525, 564
ApeKI	GCWGC	3 cut(s)	218, 229, 299
ApoI	RAATTY	3 cut(s)	339, 386, 717
AspLEI	GCGC	1 cut(s)	492
AspS9I	GGNCC	3 cut(s)	348, 406, 764
AsuHPI	GGTGA	2 cut(s)	621, 785
AvaI	CYCGRG	1 cut(s)	322
AvaII	GGWCC	2 cut(s)	406, 764
BbvI	GCAGC	3 cut(s)	205, 241, 286
BccI	CCATC	1 cut(s)	411
BciT130I	CCWGG	7 cut(s)	345, 524, 563, 633, 687, 750, 768
BfaI	CTAG	1 cut(s)	168
BfmI	CTRYAG	3 cut(s)	20, 124, 549
BfuAI	ACCTGC	1 cut(s)	503
BisI	GCNGC	3 cut(s)	219, 230, 300
BlsI	GCNGC	3 cut(s)	220, 231, 301
Bme1390I	CCNGG	7 cut(s)	345, 524, 563, 633, 687, 750, 768
Bme18I	GGWCC	2 cut(s)	406, 764
BmeT110I	CYCGRG	1 cut(s)	322
BmgT120I	GGNCC	3 cut(s)	348, 406, 764
BmiI	GGNNCC	2 cut(s)	349, 407
BmrFI	CCNGG	7 cut(s)	345, 524, 563, 633, 687, 750, 768
BmrI	ACTGGG	1 cut(s)	102
BmsI	GCATC	2 cut(s)	230, 518
BmuI	ACTGGG	1 cut(s)	102
BoxI	GACNNNNGTC	1 cut(s)	425
BpmI	CTGGAG	1 cut(s)	789
Bsa29I	ATCGAT	1 cut(s)	329
BsaJI	CCNNGG	5 cut(s)	344, 412, 522, 632, 686
Bsc4I	CCNNNNNNNGG	1 cut(s)	755
Bse118I	RCCGGY	1 cut(s)	62
Bse1I	ACTGG	3 cut(s)	97, 214, 249
Bse3DI	GCAATG	2 cut(s)	57, 220
BseBI	CCWGG	7 cut(s)	345, 524, 563, 633, 687, 750, 768
BseCI	ATCGAT	1 cut(s)	329
BseDI	CCNNGG	5 cut(s)	344, 412, 522, 632, 686
BseGI	GGATG	3 cut(s)	374, 422, 709
BseLI	CCNNNNNNNGG	1 cut(s)	755
BseMI	GCAATG	2 cut(s)	57, 220
BseMII	CTCAG	1 cut(s)	123
BseNI	ACTGG	3 cut(s)	97, 214, 249
BseRI	GAGGAG	1 cut(s)	280
BseXI	GCAGC	3 cut(s)	205, 241, 286
BseYI	CCCAGC	1 cut(s)	392
Bsh1285I	CGRYCG	1 cut(s)	67
BshFI	GGCC	4 cut(s)	130, 350, 527, 566
BshVI	ATCGAT	1 cut(s)	329
BsiEI	CGRYCG	1 cut(s)	67
BsiHKCI	CYCGRG	1 cut(s)	322
BsiSI	CCGG	2 cut(s)	63, 528
BslFI	GGGAC	1 cut(s)	413
BslI	CCNNNNNNNGG	1 cut(s)	755
BsmFI	GGGAC	1 cut(s)	413
BsmI	GAATGC	1 cut(s)	664
BsnI	GGCC	4 cut(s)	130, 350, 527, 566
BsoBI	CYCGRG	1 cut(s)	322
Bsp143I	GATC	4 cut(s)	151, 269, 326, 626
BspACI	CCGC	3 cut(s)	173, 409, 481
BspANI	GGCC	4 cut(s)	130, 350, 527, 566
BspCNI	CTCAG	1 cut(s)	124
BspDI	ATCGAT	1 cut(s)	329
BspLI	GGNNCC	2 cut(s)	349, 407
BspMAI	CTGCAG	2 cut(s)	128, 553
BspMI	ACCTGC	1 cut(s)	503
BspPI	GGATC	1 cut(s)	277
BsrDI	GCAATG	2 cut(s)	57, 220
BsrFI	RCCGGY	1 cut(s)	62
BsrI	ACTGG	3 cut(s)	97, 214, 249
BssAI	RCCGGY	1 cut(s)	62
BssECI	CCNNGG	5 cut(s)	344, 412, 522, 632, 686
BssMI	GATC	4 cut(s)	151, 269, 326, 626
Bst2UI	CCWGG	7 cut(s)	345, 524, 563, 633, 687, 750, 768
Bst4CI	ACNGT	4 cut(s)	55, 424, 476, 577
Bst6I	CTCTTC	1 cut(s)	771
BstC8I	GCNNGC	3 cut(s)	128, 537, 541
BstDEI	CTNAG	1 cut(s)	132
BstEII	GGTNACC	1 cut(s)	557
BstF5I	GGATG	3 cut(s)	374, 422, 709
BstHHI	GCGC	1 cut(s)	492
BstKTI	GATC	4 cut(s)	154, 272, 329, 629
BstMBI	GATC	4 cut(s)	151, 269, 326, 626
BstMCI	CGRYCG	1 cut(s)	67
BstMWI	GCNNNNNNNGC	4 cut(s)	68, 170, 238, 489
BstNI	CCWGG	7 cut(s)	345, 524, 563, 633, 687, 750, 768
BstNSI	RCATGY	1 cut(s)	543
BstPAI	GACNNNNGTC	1 cut(s)	425
BstPI	GGTNACC	1 cut(s)	557
BstSCI	CCNGG	7 cut(s)	343, 522, 561, 631, 685, 748, 766
BstSFI	CTRYAG	3 cut(s)	20, 124, 549
BstV1I	GCAGC	3 cut(s)	205, 241, 286
Bsu15I	ATCGAT	1 cut(s)	329
BsuRI	GGCC	4 cut(s)	130, 350, 527, 566
BsuTUI	ATCGAT	1 cut(s)	329
BtsCI	GGATG	3 cut(s)	374, 422, 709
BtsIMutI	CAGTG	1 cut(s)	582
BveI	ACCTGC	1 cut(s)	503
Cac8I	GCNNGC	3 cut(s)	128, 537, 541
CfoI	GCGC	1 cut(s)	492
Cfr10I	RCCGGY	1 cut(s)	62
Cfr13I	GGNCC	3 cut(s)	348, 406, 764
ClaI	ATCGAT	1 cut(s)	329
Csp6I	GTAC	3 cut(s)	115, 677, 781
CspCI	CAANNNNNGTGG	2 cut(s)	562, 597
CviAII	CATG	1 cut(s)	540
CviQI	GTAC	3 cut(s)	115, 677, 781
DdeI	CTNAG	1 cut(s)	132
DpnI	GATC	4 cut(s)	153, 271, 328, 628
DpnII	GATC	4 cut(s)	151, 269, 326, 626
Eam1104I	CTCTTC	1 cut(s)	771
EarI	CTCTTC	1 cut(s)	771
EciI	GGCGGA	2 cut(s)	188, 398
Eco147I	AGGCCT	1 cut(s)	130
Eco32I	GATATC	1 cut(s)	178
Eco47I	GGWCC	2 cut(s)	406, 764
Eco88I	CYCGRG	1 cut(s)	322
Eco91I	GGTNACC	1 cut(s)	557
EcoO65I	GGTNACC	1 cut(s)	557
EcoRII	CCWGG	7 cut(s)	343, 522, 561, 631, 685, 748, 766
EcoRV	GATATC	1 cut(s)	178
FaeI	CATG	1 cut(s)	543
FaqI	GGGAC	1 cut(s)	413
FatI	CATG	1 cut(s)	539
Fnu4HI	GCNGC	3 cut(s)	219, 230, 300
FokI	GGATG	3 cut(s)	361, 429, 716
Fsp4HI	GCNGC	3 cut(s)	219, 230, 300
FspAI	RTGCGCAY	1 cut(s)	491
FspBI	CTAG	1 cut(s)	168
FspI	TGCGCA	1 cut(s)	491
GlaI	GCGC	1 cut(s)	491
GluI	GCNGC	3 cut(s)	219, 230, 300
GsaI	CCCAGC	1 cut(s)	396
GsuI	CTGGAG	1 cut(s)	789
HaeIII	GGCC	4 cut(s)	130, 350, 527, 566
HapII	CCGG	2 cut(s)	63, 528
HhaI	GCGC	1 cut(s)	492
Hin1II	CATG	1 cut(s)	543
Hin6I	GCGC	1 cut(s)	490
HinP1I	GCGC	1 cut(s)	490
HincII	GTYRAC	1 cut(s)	583
HindII	GTYRAC	1 cut(s)	583
HinfI	GANTC	2 cut(s)	47, 287
HpaII	CCGG	2 cut(s)	63, 528
HphI	GGTGA	2 cut(s)	621, 785
Hpy166II	GTNNAC	4 cut(s)	115, 399, 583, 616
Hpy188I	TCNGA	4 cut(s)	313, 416, 626, 788
Hpy188III	TCNNGA	3 cut(s)	83, 149, 722
Hpy8I	GTNNAC	4 cut(s)	115, 399, 583, 616
HpyAV	CCTTC	3 cut(s)	388, 548, 634
HpyCH4III	ACNGT	4 cut(s)	55, 424, 476, 577
HpyCH4V	TGCA	9 cut(s)	126, 221, 257, 362, 449, 509, 551, 602, 662
HpyF10VI	GCNNNNNNNGC	4 cut(s)	68, 170, 238, 489
HpyF3I	CTNAG	1 cut(s)	132
Hsp92II	CATG	1 cut(s)	543
HspAI	GCGC	1 cut(s)	490
Kzo9I	GATC	4 cut(s)	151, 269, 326, 626
Lsp1109I	GCAGC	3 cut(s)	205, 241, 286
LweI	GCATC	2 cut(s)	230, 518
MaeI	CTAG	1 cut(s)	168
MaeIII	GTNAC	3 cut(s)	476, 557, 739
MalI	GATC	4 cut(s)	153, 271, 328, 628
MboI	GATC	4 cut(s)	151, 269, 326, 626
MboII	GAAGA	1 cut(s)	788
MfeI	CAATTG	2 cut(s)	159, 363
MluCI	AATT	7 cut(s)	139, 159, 339, 363, 386, 609, 717
MlyI	GAGTC	1 cut(s)	281
MnlI	CCTC	6 cut(s)	79, 301, 349, 422, 524, 764
MseI	TTAA	1 cut(s)	851
MspI	CCGG	2 cut(s)	63, 528
MspR9I	CCNGG	7 cut(s)	345, 524, 563, 633, 687, 750, 768
MunI	CAATTG	2 cut(s)	159, 363
Mva1269I	GAATGC	1 cut(s)	664
MvaI	CCWGG	7 cut(s)	345, 524, 563, 633, 687, 750, 768
MwoI	GCNNNNNNNGC	4 cut(s)	68, 170, 238, 489
NdeII	GATC	4 cut(s)	151, 269, 326, 626
NlaIII	CATG	1 cut(s)	543
NlaIV	GGNNCC	2 cut(s)	349, 407
NmuCI	GTSAC	1 cut(s)	739
NsbI	TGCGCA	1 cut(s)	491
NspI	RCATGY	1 cut(s)	543
PaeI	GCATGC	1 cut(s)	543
PaqCI	CACCTGC	1 cut(s)	503
PceI	AGGCCT	1 cut(s)	130
PctI	GAATGC	1 cut(s)	664
PfeI	GAWTC	1 cut(s)	47
PfoI	TCCNGGA	1 cut(s)	766
PkrI	GCNGC	3 cut(s)	220, 231, 301
PleI	GAGTC	1 cut(s)	281
PpsI	GAGTC	1 cut(s)	281
PshAI	GACNNNNGTC	1 cut(s)	425
Psp6I	CCWGG	7 cut(s)	343, 522, 561, 631, 685, 748, 766
PspEI	GGTNACC	1 cut(s)	557
PspFI	CCCAGC	1 cut(s)	392
PspGI	CCWGG	7 cut(s)	343, 522, 561, 631, 685, 748, 766
PspN4I	GGNNCC	2 cut(s)	349, 407
PspPI	GGNCC	3 cut(s)	348, 406, 764
PsrI	GAACNNNNNNTAC	2 cut(s)	98, 130
PstI	CTGCAG	2 cut(s)	128, 553
RsaI	GTAC	3 cut(s)	116, 678, 782
RsaNI	GTAC	3 cut(s)	115, 677, 781
SaqAI	TTAA	1 cut(s)	851
SatI	GCNGC	3 cut(s)	219, 230, 300
Sau3AI	GATC	4 cut(s)	151, 269, 326, 626
Sau96I	GGNCC	3 cut(s)	348, 406, 764
SchI	GAGTC	1 cut(s)	281
ScrFI	CCNGG	7 cut(s)	345, 524, 563, 633, 687, 750, 768
SfaNI	GCATC	2 cut(s)	230, 518
SfcI	CTRYAG	3 cut(s)	20, 124, 549
SinI	GGWCC	2 cut(s)	406, 764
SphI	GCATGC	1 cut(s)	543
Sse9I	AATT	7 cut(s)	139, 159, 339, 363, 386, 609, 717
SseBI	AGGCCT	1 cut(s)	130
SsiI	CCGC	3 cut(s)	173, 409, 481
SspI	AATATT	1 cut(s)	517
SspMI	CTAG	1 cut(s)	168
StuI	AGGCCT	1 cut(s)	130
StyD4I	CCNGG	7 cut(s)	343, 522, 561, 631, 685, 748, 766
TaaI	ACNGT	4 cut(s)	55, 424, 476, 577
TaqI	TCGA	3 cut(s)	67, 205, 329
TasI	AATT	7 cut(s)	139, 159, 339, 363, 386, 609, 717
TatI	WGTACW	1 cut(s)	780
TfiI	GAWTC	1 cut(s)	47
Tru1I	TTAA	1 cut(s)	851
Tru9I	TTAA	1 cut(s)	851
TscAI	CASTG	1 cut(s)	582
TseFI	GTSAC	1 cut(s)	739
TseI	GCWGC	3 cut(s)	218, 229, 299
Tsp45I	GTSAC	1 cut(s)	739
TspDTI	ATGAA	3 cut(s)	351, 363, 729
TspGWI	ACGGA	1 cut(s)	282
TspRI	CASTG	1 cut(s)	582
VpaK11BI	GGWCC	2 cut(s)	406, 764
XapI	RAATTY	3 cut(s)	339, 386, 717
XceI	RCATGY	1 cut(s)	543
XcmI	CCANNNNNNNNNTGG	1 cut(s)	574
XspI	CTAG	1 cut(s)	168

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.