Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0003005

Physical Location & Seq

Genomic Coordinates Reverse (-)

54721818 .. 54724957

Gene Structure 3140 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG461300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1308 bp

ATGATTTACAGTTCAAACTCTGAAAATGAGAGCAAAGTTGGGAAGCTATTACAATCTCAAAAAGTCACAGGTCATTGCACAAAAGTCTTGCGCAGTGTCAATATGGAGAACTTGCAAAACGAATATTTGTTTCCAGAGATATTCATGCGTGAGTTTCTGCATACTCAGAAGTACCCACATGCAAGAGTAATTAGACTTGGTATAGGTAATACTACAGAACCTATACCAGACATCATCACATCTGCTATGGCTGAGCATGCACATGCTCTATCAACAGTTGAAGGTTACAGAGGGTACGGAGCTGAGCAAGGCCACATGGCATTGAGAATGTCAATTGCAGAAAGATTCTACACGAATATGGGCATAGAAGGCAATGAGGTGTTTGTATCAGATGGTGCCCAATGTGACATTTCTCGCCTTCAAATGCTTTTAGGTTCCAACGTGACAGTAGCTGTGCAAGACCCTTCTTTCCCGGCATACATAGATTCTAGTGTCATTGCTGGTCGAGCTGGCAACTTTCAGGAGGAAACCGGGAAGTATAAGAACATTGTCTACCTCAATTGCAGACCTGAGAATAATTTTTTTCCTGACTTATCATCTGCTTCAAGGGCGGATCTCATATTTTTCTGCTCTCCAAACAATCCAACTGGAAATGCTGCATCATGGCATCAACTAAAGCAACTGGTGGAGTTTGCTAAAGCAAATGGATCAATCATAGTTTATGACTCCTCATATGCTGCTTATATATCAGATGGAAGCCCAAGATCAATTTACGAAATTCCTGGTGCCAGAGAGGTTGCAATTGAAATATCATCCTTCTCCAAATTTGCGGGGTTCACAGGAGTCCGACTTGGTTGGACGGTTGTCCCTGAAGAGTTGTTGTATGCAAATGGATTTCCGGTCATAAAAGATTATAACCGCATAGTGTGCACCTGTTTCAATGGTGCATCAAATATAGCTCAGGCTGGAGGGCTAGCATGCCTTTCTGCAGAAGGTTATCAGGCTATAACAAATGTGGTTGACTACTACAAGGAGAATGCAAAAATCATTATCGACACATTCAGAGCACTTGGGTTGAAGGTGTATGGAGGCAAAAATGCTCCTTATATATGGGTACATTTTCCAGGGTTGAGTTCATGGGATGTGTTCAATCAAATTCTTGAAAAGACACACATAGTGACCATACCAGGAAAGGGCTTTGGTCCTGCAGGTGAAGGGTATATCAGAGTTGGTGCTTTTGGCCACAGAGAAACCATATTGGAAGCTTCAGCAAGGCTAAAGAATTTTCTTGTAACTGATAATATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002376 GO:0003674 GO:0003824 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008483 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009607 GO:0009627 GO:0009719 GO:0009725 GO:0009735 GO:0009751 GO:0009814 GO:0009862 GO:0009863 GO:0009987 GO:0010033 GO:0010285 GO:0014070 GO:0016740 GO:0016769 GO:0023052 GO:0032870 GO:0035690 GO:0042221 GO:0042493 GO:0043167 GO:0043169 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0046677 GO:0046872 GO:0046914 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071407 GO:0071446 GO:0071495 GO:0098542 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko00300 ko01100 ko01110 ko01130 ko01230 map00300 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

Aminotran_1_2

Protein Analysis

435

Amino Acids

47.92

Weight (kDa)

6.09

Isoelectric Point (pI)

35.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aminotran_1_2	PF00155	63 - 422	1.7e-33	Aminotransferase class I and II

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003005)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G13810
fragaria_vesca	FvH4_5g30860 FvH4_5g30860 FvH4_5g38260 FvH4_5g38260 FvH4_5g38260 FvH4_5g38260 FvH4_5g38260
malus_domestica	MD08G1221500.v1.1 MD15G1412200.v1.1 MD15G1412400.v1.1
prunus_persica	Prupe.1G509100_v2.0.a1 Prupe.1G509100_v2.0.a1 Prupe.1G509500_v2.0.a1 Prupe.1G558600_v2.0.a1
pyrus_communis	pycom08g19210 pycom15g36710
rosa_chinensis	RchiOBHm_Chr7g0226031 RchiOBHm_Chr7g0240251
rosa_laevigata	RLG00000000691 RLG00000001773
rosa_multiflora	Rmu_sc0002676.1_g000021 Rmu_sc0004200.1_g000015
rosa_roxburghii	Rroxscaffold_3G00220280 Rroxscaffold_3G00233310
rosa_rugosa	Rorug07G0234200 Rorug07G0234300 Rorug07G0334400
rosa_samantha	Rh7AG369100 Rh7AG488400 Rh7BG368200 Rh7BG461300 Rh7CG387600 Rh7CG504500 Rh7DG379300 Rh7DG472600
rosa_wichuraiana	Rw0G020940 Rw7G040880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	915
AarI	CACCTGC	1 cut(s)	1199
Acc16I	TGCGCA	1 cut(s)	92
Acc36I	ACCTGC	1 cut(s)	1199
AccB1I	GGYRCC	2 cut(s)	395, 785
AccI	GTMKAC	1 cut(s)	552
AciI	CCGC	3 cut(s)	611, 830, 919
AclWI	GGATC	2 cut(s)	621, 715
AcoI	YGGCCR	1 cut(s)	1240
AcsI	RAATTY	4 cut(s)	777, 824, 1155, 1282
AcuI	CTGAAG	2 cut(s)	891, 1251
AdeI	CACNNNGTG	1 cut(s)	1177
AfaI	GTAC	3 cut(s)	173, 296, 1116
AfiI	CCNNNNNNNGG	1 cut(s)	1193
AgsI	TTSAA	9 cut(s)	15, 281, 422, 606, 806, 940, 1078, 1150, 1163
AjnI	CCWGG	3 cut(s)	781, 1123, 1186
AluBI	AGCT	6 cut(s)	46, 302, 452, 509, 959, 1265
AluI	AGCT	6 cut(s)	46, 302, 452, 509, 959, 1265
Alw21I	GWGCWC	2 cut(s)	932, 1069
Alw44I	GTGCAC	1 cut(s)	928
AlwI	GGATC	2 cut(s)	621, 715
AlwNI	CAGNNNCTG	1 cut(s)	452
AoxI	GGCC	2 cut(s)	310, 1240
ApaLI	GTGCAC	1 cut(s)	928
ApeKI	GCWGC	2 cut(s)	656, 737
ApoI	RAATTY	4 cut(s)	777, 824, 1155, 1282
AspLEI	GCGC	1 cut(s)	93
AspS9I	GGNCC	1 cut(s)	1202
AsuC2I	CCSGG	2 cut(s)	473, 532
AsuHPI	GGTGA	1 cut(s)	1223
AsuNHI	GCTAGC	1 cut(s)	973
AvaII	GGWCC	1 cut(s)	1202
BaeGI	GKGCMC	2 cut(s)	400, 932
BalI	TGGCCA	1 cut(s)	1242
BanI	GGYRCC	2 cut(s)	395, 785
Bbv12I	GWGCWC	2 cut(s)	932, 1069
BbvI	GCAGC	2 cut(s)	643, 724
BccI	CCATC	2 cut(s)	386, 746
BciT130I	CCWGG	3 cut(s)	783, 1125, 1188
BcnI	CCSGG	2 cut(s)	473, 532
BfaI	CTAG	2 cut(s)	489, 974
BfmI	CTRYAG	3 cut(s)	213, 987, 1206
BfuAI	ACCTGC	1 cut(s)	1199
BisI	GCNGC	2 cut(s)	657, 738
BlpI	GCTNAGC	2 cut(s)	252, 303
BlsI	GCNGC	2 cut(s)	658, 739
Bme1390I	CCNGG	5 cut(s)	473, 532, 783, 1125, 1188
Bme18I	GGWCC	1 cut(s)	1202
BmgT120I	GGNCC	1 cut(s)	1202
BmiI	GGNNCC	3 cut(s)	397, 436, 787
BmrFI	CCNGG	5 cut(s)	473, 532, 783, 1125, 1188
BmsI	GCATC	3 cut(s)	668, 676, 956
BmtI	GCTAGC	1 cut(s)	977
BoxI	GACNNNNGTC	1 cut(s)	863
BpmI	CTGGAG	1 cut(s)	987
Bpu10I	CCTNAGC	1 cut(s)	960
Bpu1102I	GCTNAGC	2 cut(s)	252, 303
BpuMI	CCSGG	2 cut(s)	473, 532
BsaJI	CCNNGG	1 cut(s)	1124
BsaWI	WCCGGW	1 cut(s)	898
Bsc4I	CCNNNNNNNGG	1 cut(s)	1193
Bse1I	ACTGG	2 cut(s)	652, 687
Bse3DI	GCAATG	3 cut(s)	73, 379, 495
BseBI	CCWGG	3 cut(s)	783, 1125, 1188
BseDI	CCNNGG	1 cut(s)	1124
BseGI	GGATG	2 cut(s)	812, 1147
BseLI	CCNNNNNNNGG	1 cut(s)	1193
BseMI	GCAATG	3 cut(s)	73, 379, 495
BseMII	CTCAG	5 cut(s)	179, 243, 294, 561, 974
BseNI	ACTGG	2 cut(s)	652, 687
BseRI	GAGGAG	1 cut(s)	718
BseSI	GKGCMC	2 cut(s)	400, 932
BseXI	GCAGC	2 cut(s)	643, 724
BshFI	GGCC	2 cut(s)	312, 1242
BshNI	GGYRCC	2 cut(s)	395, 785
BsiHKAI	GWGCWC	2 cut(s)	932, 1069
BsiSI	CCGG	3 cut(s)	473, 531, 899
BslFI	GGGAC	1 cut(s)	851
BslI	CCNNNNNNNGG	1 cut(s)	1193
BsmFI	GGGAC	1 cut(s)	851
BsmI	GAATGC	1 cut(s)	1042
BsnI	GGCC	2 cut(s)	312, 1242
Bsp1286I	GDGCHC	3 cut(s)	400, 932, 1069
Bsp143I	GATC	3 cut(s)	613, 707, 764
Bsp1720I	GCTNAGC	2 cut(s)	252, 303
BspACI	CCGC	3 cut(s)	611, 830, 919
BspANI	GGCC	2 cut(s)	312, 1242
BspCNI	CTCAG	5 cut(s)	178, 244, 295, 562, 973
BspLI	GGNNCC	3 cut(s)	397, 436, 787
BspMAI	CTGCAG	2 cut(s)	991, 1210
BspMI	ACCTGC	1 cut(s)	1199
BspOI	GCTAGC	1 cut(s)	977
BspPI	GGATC	2 cut(s)	621, 715
BspT107I	GGYRCC	2 cut(s)	395, 785
BsrDI	GCAATG	3 cut(s)	73, 379, 495
BsrI	ACTGG	2 cut(s)	652, 687
BssECI	CCNNGG	1 cut(s)	1124
BssMI	GATC	3 cut(s)	613, 707, 764
Bst2UI	CCWGG	3 cut(s)	783, 1125, 1188
Bst4CI	ACNGT	4 cut(s)	11, 277, 448, 862
Bst6I	CTCTTC	1 cut(s)	867
BstAPI	GCANNNNNTGC	1 cut(s)	927
BstC8I	GCNNGC	4 cut(s)	258, 511, 975, 979
BstDEI	CTNAG	5 cut(s)	165, 252, 303, 570, 960
BstF5I	GGATG	2 cut(s)	812, 1147
BstHHI	GCGC	1 cut(s)	93
BstKTI	GATC	3 cut(s)	616, 710, 767
BstMBI	GATC	3 cut(s)	613, 707, 764
BstMWI	GCNNNNNNNGC	5 cut(s)	257, 369, 506, 608, 927
BstNI	CCWGG	3 cut(s)	783, 1125, 1188
BstNSI	RCATGY	4 cut(s)	182, 260, 266, 981
BstPAI	GACNNNNGTC	1 cut(s)	863
BstSCI	CCNGG	5 cut(s)	471, 530, 781, 1123, 1186
BstSFI	CTRYAG	3 cut(s)	213, 987, 1206
BstSLI	GKGCMC	2 cut(s)	400, 932
BstV1I	GCAGC	2 cut(s)	643, 724
BstX2I	RGATCY	1 cut(s)	613
BstYI	RGATCY	1 cut(s)	613
BsuRI	GGCC	2 cut(s)	312, 1242
BtsCI	GGATG	2 cut(s)	812, 1147
BtsI	GCAGTG	1 cut(s)	100
BtsIMutI	CAGTG	1 cut(s)	100
BveI	ACCTGC	1 cut(s)	1199
Cac8I	GCNNGC	4 cut(s)	258, 511, 975, 979
CaiI	CAGNNNCTG	1 cut(s)	452
CfoI	GCGC	1 cut(s)	93
Cfr13I	GGNCC	1 cut(s)	1202
Csp6I	GTAC	3 cut(s)	172, 295, 1115
CviAII	CATG	8 cut(s)	145, 179, 257, 263, 316, 663, 978, 1137
CviQI	GTAC	3 cut(s)	172, 295, 1115
DdeI	CTNAG	5 cut(s)	165, 252, 303, 570, 960
DpnI	GATC	3 cut(s)	615, 709, 766
DpnII	GATC	3 cut(s)	613, 707, 764
DraIII	CACNNNGTG	1 cut(s)	1177
EaeI	YGGCCR	1 cut(s)	1240
Eam1104I	CTCTTC	1 cut(s)	867
EarI	CTCTTC	1 cut(s)	867
EciI	GGCGGA	1 cut(s)	626
Eco47I	GGWCC	1 cut(s)	1202
Eco57I	CTGAAG	2 cut(s)	891, 1251
EcoRII	CCWGG	3 cut(s)	781, 1123, 1186
FaeI	CATG	8 cut(s)	148, 182, 260, 266, 319, 666, 981, 1140
FaqI	GGGAC	1 cut(s)	851
FatI	CATG	8 cut(s)	144, 178, 256, 262, 315, 662, 977, 1136
FauI	CCCGC	1 cut(s)	823
FauNDI	CATATG	1 cut(s)	733
FblI	GTMKAC	1 cut(s)	552
Fnu4HI	GCNGC	2 cut(s)	657, 738
FokI	GGATG	2 cut(s)	799, 1154
Fsp4HI	GCNGC	2 cut(s)	657, 738
FspBI	CTAG	2 cut(s)	489, 974
FspI	TGCGCA	1 cut(s)	92
GlaI	GCGC	1 cut(s)	92
GluI	GCNGC	2 cut(s)	657, 738
GsuI	CTGGAG	1 cut(s)	987
HaeIII	GGCC	2 cut(s)	312, 1242
HapII	CCGG	3 cut(s)	473, 531, 899
HhaI	GCGC	1 cut(s)	93
Hin1II	CATG	8 cut(s)	148, 182, 260, 266, 319, 666, 981, 1140
Hin6I	GCGC	1 cut(s)	91
HinP1I	GCGC	1 cut(s)	91
HincII	GTYRAC	1 cut(s)	1021
HindII	GTYRAC	1 cut(s)	1021
HindIII	AAGCTT	1 cut(s)	1263
HinfI	GANTC	4 cut(s)	345, 485, 725, 843
HpaII	CCGG	3 cut(s)	473, 531, 899
HphI	GGTGA	1 cut(s)	1223
Hpy166II	GTNNAC	4 cut(s)	553, 837, 930, 1021
Hpy188I	TCNGA	7 cut(s)	22, 168, 391, 751, 848, 1064, 1226
Hpy188III	TCNNGA	4 cut(s)	134, 521, 587, 1160
Hpy8I	GTNNAC	4 cut(s)	553, 837, 930, 1021
HpyAV	CCTTC	8 cut(s)	275, 362, 428, 474, 826, 986, 1072, 1208
HpyCH4III	ACNGT	4 cut(s)	11, 277, 448, 862
HpyCH4IV	ACGT	1 cut(s)	441
HpyF10VI	GCNNNNNNNGC	5 cut(s)	257, 369, 506, 608, 927
HpyF3I	CTNAG	5 cut(s)	165, 252, 303, 570, 960
HpySE526I	ACGT	1 cut(s)	441
Hsp92II	CATG	8 cut(s)	148, 182, 260, 266, 319, 666, 981, 1140
HspAI	GCGC	1 cut(s)	91
Kzo9I	GATC	3 cut(s)	613, 707, 764
LmnI	GCTCC	2 cut(s)	299, 1105
Lsp1109I	GCAGC	2 cut(s)	643, 724
LweI	GCATC	3 cut(s)	668, 676, 956
MaeI	CTAG	2 cut(s)	489, 974
MaeII	ACGT	1 cut(s)	441
MaeIII	GTNAC	6 cut(s)	64, 284, 404, 442, 1177, 1291
MalI	GATC	3 cut(s)	615, 709, 766
MboI	GATC	3 cut(s)	613, 707, 764
MboII	GAAGA	1 cut(s)	884
MfeI	CAATTG	3 cut(s)	333, 559, 801
MflI	RGATCY	1 cut(s)	613
MhlI	GDGCHC	3 cut(s)	400, 932, 1069
MlsI	TGGCCA	1 cut(s)	1242
MluNI	TGGCCA	1 cut(s)	1242
MlyI	GAGTC	2 cut(s)	719, 852
MmeI	TCCRAC	4 cut(s)	462, 668, 836, 871
MnlI	CCTC	8 cut(s)	284, 370, 517, 566, 739, 787, 962, 1082
Mox20I	TGGCCA	1 cut(s)	1242
MscI	TGGCCA	1 cut(s)	1242
MslI	CAYNNNNRTG	2 cut(s)	261, 356
Msp20I	TGGCCA	1 cut(s)	1242
MspI	CCGG	3 cut(s)	473, 531, 899
MspR9I	CCNGG	5 cut(s)	473, 532, 783, 1125, 1188
MunI	CAATTG	3 cut(s)	333, 559, 801
Mva1269I	GAATGC	1 cut(s)	1042
MvaI	CCWGG	3 cut(s)	783, 1125, 1188
MwoI	GCNNNNNNNGC	5 cut(s)	257, 369, 506, 608, 927
NciI	CCSGG	2 cut(s)	473, 532
NdeI	CATATG	1 cut(s)	733
NdeII	GATC	3 cut(s)	613, 707, 764
NheI	GCTAGC	1 cut(s)	973
NlaIII	CATG	8 cut(s)	148, 182, 260, 266, 319, 666, 981, 1140
NlaIV	GGNNCC	3 cut(s)	397, 436, 787
NmuCI	GTSAC	4 cut(s)	64, 404, 442, 1177
NsbI	TGCGCA	1 cut(s)	92
NspI	RCATGY	4 cut(s)	182, 260, 266, 981
PaeI	GCATGC	2 cut(s)	260, 981
PaqCI	CACCTGC	1 cut(s)	1199
PctI	GAATGC	1 cut(s)	1042
PfeI	GAWTC	2 cut(s)	345, 485
PkrI	GCNGC	2 cut(s)	658, 739
PleI	GAGTC	2 cut(s)	719, 851
PpsI	GAGTC	2 cut(s)	719, 851
PshAI	GACNNNNGTC	1 cut(s)	863
PsiI	TTATAA	1 cut(s)	915
Psp6I	CCWGG	3 cut(s)	781, 1123, 1186
PspGI	CCWGG	3 cut(s)	781, 1123, 1186
PspN4I	GGNNCC	3 cut(s)	397, 436, 787
PspPI	GGNCC	1 cut(s)	1202
PsrI	GAACNNNNNNTAC	2 cut(s)	536, 568
PstI	CTGCAG	2 cut(s)	991, 1210
PstNI	CAGNNNCTG	1 cut(s)	452
PsuI	RGATCY	1 cut(s)	613
RsaI	GTAC	3 cut(s)	173, 296, 1116
RsaNI	GTAC	3 cut(s)	172, 295, 1115
RseI	CAYNNNNRTG	2 cut(s)	261, 356
SatI	GCNGC	2 cut(s)	657, 738
Sau3AI	GATC	3 cut(s)	613, 707, 764
Sau96I	GGNCC	1 cut(s)	1202
SbfI	CCTGCAGG	1 cut(s)	1210
SchI	GAGTC	2 cut(s)	719, 852
ScrFI	CCNGG	5 cut(s)	473, 532, 783, 1125, 1188
SdaI	CCTGCAGG	1 cut(s)	1210
SduI	GDGCHC	3 cut(s)	400, 932, 1069
SfaNI	GCATC	3 cut(s)	668, 676, 956
SfcI	CTRYAG	3 cut(s)	213, 987, 1206
SinI	GGWCC	1 cut(s)	1202
SmiMI	CAYNNNNRTG	2 cut(s)	261, 356
SphI	GCATGC	2 cut(s)	260, 981
Sse8387I	CCTGCAGG	1 cut(s)	1210
SsiI	CCGC	3 cut(s)	611, 830, 919
SspI	AATATT	2 cut(s)	125, 1303
SspMI	CTAG	2 cut(s)	489, 974
StyD4I	CCNGG	5 cut(s)	471, 530, 781, 1123, 1186
TaaI	ACNGT	4 cut(s)	11, 277, 448, 862
TaiI	ACGT	1 cut(s)	444
TaqI	TCGA	2 cut(s)	505, 1053
TfiI	GAWTC	2 cut(s)	345, 485
TscAI	CASTG	1 cut(s)	100
TseFI	GTSAC	4 cut(s)	64, 404, 442, 1177
TseI	GCWGC	2 cut(s)	656, 737
Tsp45I	GTSAC	4 cut(s)	64, 404, 442, 1177
TspDTI	ATGAA	2 cut(s)	133, 1125
TspGWI	ACGGA	1 cut(s)	312
TspRI	CASTG	1 cut(s)	100
VneI	GTGCAC	1 cut(s)	928
VpaK11BI	GGWCC	1 cut(s)	1202
XapI	RAATTY	4 cut(s)	777, 824, 1155, 1282
XceI	RCATGY	4 cut(s)	182, 260, 266, 981
XmiI	GTMKAC	1 cut(s)	552
XspI	CTAG	2 cut(s)	489, 974

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.