Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0003005

Physical Location & Seq

Genomic Coordinates Reverse (-)

68878125 .. 68882278

Gene Structure 4154 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG488400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1341 bp

ATGCCTTCTTGTGTTTCATCACAGCCAAAACCAATCTTGACCAGTTCAAACTCTGAAAATGAGAGCAAAGTTGGGAAGCTATCACAATCTCAAAAAGTTACAGGTCATTGCACAAAAGTCTCGCGCAGTGTCAATATGGAGAACTTGCAAAACGAATATTTGTTTCCAGAGATATTCATGCGCGAGTTTCTGCATACTCAGAAGTACCCACATGCAAGAGTAATTAGACTTGGTATAGGTAATACTACAGAACCTATACCAGACATCATCACATCTGCTATGGCTGAGCATGCACATGCTCTATCAACAGTTGAAGGTTACAGAGGGTACGGAGCTGAGCAAGGCCACATGGCATTGAGAATGTCAATTGCACAAAGATTCTACAAGAATATGGGCATAGAAGGCAATGAGGTGTTTGTATCAGATGGTGCCCAATGTGACATTTCTCGCCTTCAAATGCTTTTAGGTTCCAACGTGACGGTAGCTGTGCAAGACCCTTCTTTCCCGGCATACATAGATTCTAGTGTCATTGCTGGTCGAGCTGGCAACTTTCAGGAGGAAACCGGGAAGTATAAGAACATTGTCTACCTCAATTGCAGACCTGAGAATAATTTTTTTCCTGACTTATCAACTGCTTCAAGGGCGGATCTCATATTTTTCTGCTCTCCGAACAATCCAACTGGAAATGCTGCATCATGGCATCAACTAAAGCAACTGGTGGAGTTTGCTAAAGCAAATGGATCAATCATAGTTTATGACTCCTCATATGCTGCTTATATATCAGATGGAAGCCCAAGATCAATTTACGAAATTCCTGGTGCCAGAGAGGTTGCAATTGAAATATCATCCTTCTCCAAATTTGCTGGGTTCACAGGAGTCCGACTTGGTTGGACGGTTGTCCCTGAAGAGTTGTTGTATGCAAATGGATTTCCGGTCATAAAAGATTATAACCGCATAGTGTGCACCTGCTTCAATGGTGCATCAAATATAGCTCAGGCTGGAGGGCTAGCATGCCTTTCTGCAGAAGGTTATCAGGCTATAACAAATGTGGTTGACTACTACAAGGAGAATGCAAAAATCATTATCGACACATTCAGAGCACTTGGGTTGAAGGTGTATGGAGGCAAAAATGCTCCTTATATATGGGTACATTTTCCAGGGTTGAGTTCATGGGATGTGTTCAATCAAATTCTTGAAAAGACACACATAGTGACCATACCAGGAAAGGGATTTGGTCCTGCAGGTGAAGGGTATATCAGAGTTGGTGCTTTTGGCCACAGAGAAACCATATTGGAAGCTTCAGCAAGGCTAAAGAATTTTTTTGTAACTGATAATATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002376 GO:0003674 GO:0003824 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008483 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009607 GO:0009627 GO:0009719 GO:0009725 GO:0009735 GO:0009751 GO:0009814 GO:0009862 GO:0009863 GO:0009987 GO:0010033 GO:0010285 GO:0014070 GO:0016740 GO:0016769 GO:0023052 GO:0032870 GO:0035690 GO:0042221 GO:0042493 GO:0043167 GO:0043169 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0046677 GO:0046872 GO:0046914 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071407 GO:0071446 GO:0071495 GO:0098542 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko00300 ko01100 ko01110 ko01130 ko01230 map00300 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

Aminotran_1_2

Protein Analysis

446

Amino Acids

49.01

Weight (kDa)

6.57

Isoelectric Point (pI)

37.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aminotran_1_2	PF00155	74 - 433	1.7e-33	Aminotransferase class I and II

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003005)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G13810
fragaria_vesca	FvH4_5g30860 FvH4_5g30860 FvH4_5g38260 FvH4_5g38260 FvH4_5g38260 FvH4_5g38260 FvH4_5g38260
malus_domestica	MD08G1221500.v1.1 MD15G1412200.v1.1 MD15G1412400.v1.1
prunus_persica	Prupe.1G509100_v2.0.a1 Prupe.1G509100_v2.0.a1 Prupe.1G509500_v2.0.a1 Prupe.1G558600_v2.0.a1
pyrus_communis	pycom08g19210 pycom15g36710
rosa_chinensis	RchiOBHm_Chr7g0226031 RchiOBHm_Chr7g0240251
rosa_laevigata	RLG00000000691 RLG00000001773
rosa_multiflora	Rmu_sc0002676.1_g000021 Rmu_sc0004200.1_g000015
rosa_roxburghii	Rroxscaffold_3G00220280 Rroxscaffold_3G00233310
rosa_rugosa	Rorug07G0234200 Rorug07G0234300 Rorug07G0334400
rosa_samantha	Rh7AG369100 Rh7AG488400 Rh7BG368200 Rh7BG461300 Rh7CG387600 Rh7CG504500 Rh7DG379300 Rh7DG472600
rosa_wichuraiana	Rw0G020940 Rw7G040880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	948
AarI	CACCTGC	2 cut(s)	974, 1232
Acc36I	ACCTGC	2 cut(s)	974, 1232
AccB1I	GGYRCC	2 cut(s)	428, 818
AccI	GTMKAC	1 cut(s)	585
AccII	CGCG	2 cut(s)	124, 183
AciI	CCGC	2 cut(s)	644, 952
AclWI	GGATC	2 cut(s)	654, 748
AcoI	YGGCCR	1 cut(s)	1273
AcsI	RAATTY	4 cut(s)	810, 857, 1188, 1315
AcuI	CTGAAG	2 cut(s)	924, 1284
AdeI	CACNNNGTG	1 cut(s)	1210
AfaI	GTAC	3 cut(s)	206, 329, 1149
AfiI	CCNNNNNNNGG	1 cut(s)	1226
AgsI	TTSAA	9 cut(s)	48, 314, 455, 639, 839, 973, 1111, 1183, 1196
AjnI	CCWGG	3 cut(s)	814, 1156, 1219
AluBI	AGCT	6 cut(s)	79, 335, 485, 542, 992, 1298
AluI	AGCT	6 cut(s)	79, 335, 485, 542, 992, 1298
Alw21I	GWGCWC	2 cut(s)	965, 1102
Alw26I	GTCTC	1 cut(s)	124
Alw44I	GTGCAC	1 cut(s)	961
AlwI	GGATC	2 cut(s)	654, 748
AoxI	GGCC	2 cut(s)	343, 1273
ApaLI	GTGCAC	1 cut(s)	961
ApeKI	GCWGC	2 cut(s)	689, 770
ApoI	RAATTY	4 cut(s)	810, 857, 1188, 1315
AspLEI	GCGC	2 cut(s)	126, 183
AspS9I	GGNCC	1 cut(s)	1235
AsuC2I	CCSGG	2 cut(s)	506, 565
AsuHPI	GGTGA	1 cut(s)	1256
AsuNHI	GCTAGC	1 cut(s)	1006
AvaII	GGWCC	1 cut(s)	1235
BaeGI	GKGCMC	2 cut(s)	433, 965
BalI	TGGCCA	1 cut(s)	1275
BanI	GGYRCC	2 cut(s)	428, 818
Bbv12I	GWGCWC	2 cut(s)	965, 1102
BbvI	GCAGC	2 cut(s)	676, 757
BccI	CCATC	2 cut(s)	419, 779
BciT130I	CCWGG	3 cut(s)	816, 1158, 1221
BcnI	CCSGG	2 cut(s)	506, 565
BcoDI	GTCTC	1 cut(s)	124
BfaI	CTAG	2 cut(s)	522, 1007
BfmI	CTRYAG	3 cut(s)	246, 1020, 1239
BfuAI	ACCTGC	2 cut(s)	974, 1232
BisI	GCNGC	2 cut(s)	690, 771
BlpI	GCTNAGC	2 cut(s)	285, 336
BlsI	GCNGC	2 cut(s)	691, 772
Bme1390I	CCNGG	5 cut(s)	506, 565, 816, 1158, 1221
Bme18I	GGWCC	1 cut(s)	1235
BmgT120I	GGNCC	1 cut(s)	1235
BmiI	GGNNCC	3 cut(s)	430, 469, 820
BmrFI	CCNGG	5 cut(s)	506, 565, 816, 1158, 1221
BmsI	GCATC	3 cut(s)	701, 709, 989
BmtI	GCTAGC	1 cut(s)	1010
BoxI	GACNNNNGTC	1 cut(s)	896
BpmI	CTGGAG	1 cut(s)	1020
Bpu10I	CCTNAGC	1 cut(s)	993
Bpu1102I	GCTNAGC	2 cut(s)	285, 336
BpuMI	CCSGG	2 cut(s)	506, 565
BsaJI	CCNNGG	1 cut(s)	1157
BsaWI	WCCGGW	1 cut(s)	931
Bsc4I	CCNNNNNNNGG	1 cut(s)	1226
Bse1I	ACTGG	3 cut(s)	42, 685, 720
Bse3DI	GCAATG	3 cut(s)	106, 412, 528
BseBI	CCWGG	3 cut(s)	816, 1158, 1221
BseDI	CCNNGG	1 cut(s)	1157
BseGI	GGATG	2 cut(s)	845, 1180
BseLI	CCNNNNNNNGG	1 cut(s)	1226
BseMI	GCAATG	3 cut(s)	106, 412, 528
BseMII	CTCAG	5 cut(s)	212, 276, 327, 594, 1007
BseNI	ACTGG	3 cut(s)	42, 685, 720
BseRI	GAGGAG	1 cut(s)	751
BseSI	GKGCMC	2 cut(s)	433, 965
BseXI	GCAGC	2 cut(s)	676, 757
BseYI	CCCAGC	1 cut(s)	863
Bsh1236I	CGCG	2 cut(s)	124, 183
BshFI	GGCC	2 cut(s)	345, 1275
BshNI	GGYRCC	2 cut(s)	428, 818
BsiHKAI	GWGCWC	2 cut(s)	965, 1102
BsiSI	CCGG	3 cut(s)	506, 564, 932
BslFI	GGGAC	1 cut(s)	884
BslI	CCNNNNNNNGG	1 cut(s)	1226
BsmAI	GTCTC	1 cut(s)	124
BsmFI	GGGAC	1 cut(s)	884
BsmI	GAATGC	1 cut(s)	1075
BsnI	GGCC	2 cut(s)	345, 1275
Bsp1286I	GDGCHC	3 cut(s)	433, 965, 1102
Bsp143I	GATC	3 cut(s)	646, 740, 797
Bsp1720I	GCTNAGC	2 cut(s)	285, 336
BspACI	CCGC	2 cut(s)	644, 952
BspANI	GGCC	2 cut(s)	345, 1275
BspCNI	CTCAG	5 cut(s)	211, 277, 328, 595, 1006
BspFNI	CGCG	2 cut(s)	124, 183
BspLI	GGNNCC	3 cut(s)	430, 469, 820
BspMAI	CTGCAG	2 cut(s)	1024, 1243
BspMI	ACCTGC	2 cut(s)	974, 1232
BspOI	GCTAGC	1 cut(s)	1010
BspPI	GGATC	2 cut(s)	654, 748
BspT107I	GGYRCC	2 cut(s)	428, 818
BsrDI	GCAATG	3 cut(s)	106, 412, 528
BsrI	ACTGG	3 cut(s)	42, 685, 720
BssECI	CCNNGG	1 cut(s)	1157
BssMI	GATC	3 cut(s)	646, 740, 797
Bst2UI	CCWGG	3 cut(s)	816, 1158, 1221
Bst4CI	ACNGT	3 cut(s)	310, 481, 895
Bst6I	CTCTTC	1 cut(s)	900
BstAPI	GCANNNNNTGC	1 cut(s)	960
BstC8I	GCNNGC	4 cut(s)	291, 544, 1008, 1012
BstDEI	CTNAG	5 cut(s)	198, 285, 336, 603, 993
BstF5I	GGATG	2 cut(s)	845, 1180
BstFNI	CGCG	2 cut(s)	124, 183
BstHHI	GCGC	2 cut(s)	126, 183
BstKTI	GATC	3 cut(s)	649, 743, 800
BstMAI	GTCTC	1 cut(s)	124
BstMBI	GATC	3 cut(s)	646, 740, 797
BstMWI	GCNNNNNNNGC	5 cut(s)	290, 402, 539, 641, 960
BstNI	CCWGG	3 cut(s)	816, 1158, 1221
BstNSI	RCATGY	4 cut(s)	215, 293, 299, 1014
BstPAI	GACNNNNGTC	1 cut(s)	896
BstSCI	CCNGG	5 cut(s)	504, 563, 814, 1156, 1219
BstSFI	CTRYAG	3 cut(s)	246, 1020, 1239
BstSLI	GKGCMC	2 cut(s)	433, 965
BstUI	CGCG	2 cut(s)	124, 183
BstV1I	GCAGC	2 cut(s)	676, 757
BstX2I	RGATCY	1 cut(s)	646
BstYI	RGATCY	1 cut(s)	646
BsuRI	GGCC	2 cut(s)	345, 1275
BtsCI	GGATG	2 cut(s)	845, 1180
BtsI	GCAGTG	1 cut(s)	133
BtsIMutI	CAGTG	1 cut(s)	133
BveI	ACCTGC	2 cut(s)	974, 1232
Cac8I	GCNNGC	4 cut(s)	291, 544, 1008, 1012
CfoI	GCGC	2 cut(s)	126, 183
Cfr13I	GGNCC	1 cut(s)	1235
Csp6I	GTAC	3 cut(s)	205, 328, 1148
CviAII	CATG	8 cut(s)	178, 212, 290, 296, 349, 696, 1011, 1170
CviQI	GTAC	3 cut(s)	205, 328, 1148
DdeI	CTNAG	5 cut(s)	198, 285, 336, 603, 993
DpnI	GATC	3 cut(s)	648, 742, 799
DpnII	GATC	3 cut(s)	646, 740, 797
DraIII	CACNNNGTG	1 cut(s)	1210
EaeI	YGGCCR	1 cut(s)	1273
Eam1104I	CTCTTC	1 cut(s)	900
EarI	CTCTTC	1 cut(s)	900
EciI	GGCGGA	1 cut(s)	659
Eco47I	GGWCC	1 cut(s)	1235
Eco57I	CTGAAG	2 cut(s)	924, 1284
EcoRII	CCWGG	3 cut(s)	814, 1156, 1219
FaeI	CATG	8 cut(s)	181, 215, 293, 299, 352, 699, 1014, 1173
FaqI	GGGAC	1 cut(s)	884
FatI	CATG	8 cut(s)	177, 211, 289, 295, 348, 695, 1010, 1169
FauNDI	CATATG	1 cut(s)	766
FblI	GTMKAC	1 cut(s)	585
Fnu4HI	GCNGC	2 cut(s)	690, 771
FokI	GGATG	2 cut(s)	832, 1187
Fsp4HI	GCNGC	2 cut(s)	690, 771
FspBI	CTAG	2 cut(s)	522, 1007
GlaI	GCGC	2 cut(s)	125, 182
GluI	GCNGC	2 cut(s)	690, 771
GsaI	CCCAGC	1 cut(s)	867
GsuI	CTGGAG	1 cut(s)	1020
HaeIII	GGCC	2 cut(s)	345, 1275
HapII	CCGG	3 cut(s)	506, 564, 932
HhaI	GCGC	2 cut(s)	126, 183
Hin1II	CATG	8 cut(s)	181, 215, 293, 299, 352, 699, 1014, 1173
Hin6I	GCGC	2 cut(s)	124, 181
HinP1I	GCGC	2 cut(s)	124, 181
HincII	GTYRAC	1 cut(s)	1054
HindII	GTYRAC	1 cut(s)	1054
HindIII	AAGCTT	1 cut(s)	1296
HinfI	GANTC	4 cut(s)	378, 518, 758, 876
HpaII	CCGG	3 cut(s)	506, 564, 932
HphI	GGTGA	1 cut(s)	1256
Hpy166II	GTNNAC	4 cut(s)	586, 870, 963, 1054
Hpy188I	TCNGA	8 cut(s)	55, 201, 424, 669, 784, 881, 1097, 1259
Hpy188III	TCNNGA	5 cut(s)	37, 167, 554, 620, 1193
Hpy8I	GTNNAC	4 cut(s)	586, 870, 963, 1054
HpyAV	CCTTC	9 cut(s)	15, 308, 395, 461, 507, 859, 1019, 1105, 1241
HpyCH4III	ACNGT	3 cut(s)	310, 481, 895
HpyCH4IV	ACGT	1 cut(s)	474
HpyF10VI	GCNNNNNNNGC	5 cut(s)	290, 402, 539, 641, 960
HpyF3I	CTNAG	5 cut(s)	198, 285, 336, 603, 993
HpySE526I	ACGT	1 cut(s)	474
Hsp92II	CATG	8 cut(s)	181, 215, 293, 299, 352, 699, 1014, 1173
HspAI	GCGC	2 cut(s)	124, 181
Kzo9I	GATC	3 cut(s)	646, 740, 797
LmnI	GCTCC	2 cut(s)	332, 1138
Lsp1109I	GCAGC	2 cut(s)	676, 757
LweI	GCATC	3 cut(s)	701, 709, 989
MaeI	CTAG	2 cut(s)	522, 1007
MaeII	ACGT	1 cut(s)	474
MaeIII	GTNAC	6 cut(s)	97, 317, 437, 475, 1210, 1324
MalI	GATC	3 cut(s)	648, 742, 799
MboI	GATC	3 cut(s)	646, 740, 797
MboII	GAAGA	1 cut(s)	917
MfeI	CAATTG	3 cut(s)	366, 592, 834
MflI	RGATCY	1 cut(s)	646
MhlI	GDGCHC	3 cut(s)	433, 965, 1102
MlsI	TGGCCA	1 cut(s)	1275
MluNI	TGGCCA	1 cut(s)	1275
MlyI	GAGTC	2 cut(s)	752, 885
MmeI	TCCRAC	4 cut(s)	495, 701, 869, 904
MnlI	CCTC	8 cut(s)	317, 403, 550, 599, 772, 820, 995, 1115
Mox20I	TGGCCA	1 cut(s)	1275
MscI	TGGCCA	1 cut(s)	1275
MslI	CAYNNNNRTG	1 cut(s)	294
Msp20I	TGGCCA	1 cut(s)	1275
MspI	CCGG	3 cut(s)	506, 564, 932
MspR9I	CCNGG	5 cut(s)	506, 565, 816, 1158, 1221
MunI	CAATTG	3 cut(s)	366, 592, 834
Mva1269I	GAATGC	1 cut(s)	1075
MvaI	CCWGG	3 cut(s)	816, 1158, 1221
MvnI	CGCG	2 cut(s)	124, 183
MwoI	GCNNNNNNNGC	5 cut(s)	290, 402, 539, 641, 960
NciI	CCSGG	2 cut(s)	506, 565
NdeI	CATATG	1 cut(s)	766
NdeII	GATC	3 cut(s)	646, 740, 797
NheI	GCTAGC	1 cut(s)	1006
NlaIII	CATG	8 cut(s)	181, 215, 293, 299, 352, 699, 1014, 1173
NlaIV	GGNNCC	3 cut(s)	430, 469, 820
NmuCI	GTSAC	3 cut(s)	437, 475, 1210
NspI	RCATGY	4 cut(s)	215, 293, 299, 1014
PaeI	GCATGC	2 cut(s)	293, 1014
PaqCI	CACCTGC	2 cut(s)	974, 1232
PctI	GAATGC	1 cut(s)	1075
PfeI	GAWTC	2 cut(s)	378, 518
PkrI	GCNGC	2 cut(s)	691, 772
PleI	GAGTC	2 cut(s)	752, 884
PpsI	GAGTC	2 cut(s)	752, 884
PshAI	GACNNNNGTC	1 cut(s)	896
PsiI	TTATAA	1 cut(s)	948
Psp6I	CCWGG	3 cut(s)	814, 1156, 1219
PspFI	CCCAGC	1 cut(s)	863
PspGI	CCWGG	3 cut(s)	814, 1156, 1219
PspN4I	GGNNCC	3 cut(s)	430, 469, 820
PspPI	GGNCC	1 cut(s)	1235
PsrI	GAACNNNNNNTAC	2 cut(s)	569, 601
PstI	CTGCAG	2 cut(s)	1024, 1243
PsuI	RGATCY	1 cut(s)	646
RsaI	GTAC	3 cut(s)	206, 329, 1149
RsaNI	GTAC	3 cut(s)	205, 328, 1148
RseI	CAYNNNNRTG	1 cut(s)	294
SatI	GCNGC	2 cut(s)	690, 771
Sau3AI	GATC	3 cut(s)	646, 740, 797
Sau96I	GGNCC	1 cut(s)	1235
SbfI	CCTGCAGG	1 cut(s)	1243
SchI	GAGTC	2 cut(s)	752, 885
ScrFI	CCNGG	5 cut(s)	506, 565, 816, 1158, 1221
SdaI	CCTGCAGG	1 cut(s)	1243
SduI	GDGCHC	3 cut(s)	433, 965, 1102
SfaNI	GCATC	3 cut(s)	701, 709, 989
SfcI	CTRYAG	3 cut(s)	246, 1020, 1239
SinI	GGWCC	1 cut(s)	1235
SmiMI	CAYNNNNRTG	1 cut(s)	294
SphI	GCATGC	2 cut(s)	293, 1014
Sse8387I	CCTGCAGG	1 cut(s)	1243
SsiI	CCGC	2 cut(s)	644, 952
SspI	AATATT	2 cut(s)	158, 1336
SspMI	CTAG	2 cut(s)	522, 1007
StyD4I	CCNGG	5 cut(s)	504, 563, 814, 1156, 1219
TaaI	ACNGT	3 cut(s)	310, 481, 895
TaiI	ACGT	1 cut(s)	477
TaqI	TCGA	2 cut(s)	538, 1086
TfiI	GAWTC	2 cut(s)	378, 518
TscAI	CASTG	1 cut(s)	133
TseFI	GTSAC	3 cut(s)	437, 475, 1210
TseI	GCWGC	2 cut(s)	689, 770
Tsp45I	GTSAC	3 cut(s)	437, 475, 1210
TspDTI	ATGAA	3 cut(s)	6, 166, 1158
TspGWI	ACGGA	1 cut(s)	345
TspRI	CASTG	1 cut(s)	133
VneI	GTGCAC	1 cut(s)	961
VpaK11BI	GGWCC	1 cut(s)	1235
XapI	RAATTY	4 cut(s)	810, 857, 1188, 1315
XceI	RCATGY	4 cut(s)	215, 293, 299, 1014
XmiI	GTMKAC	1 cut(s)	585
XspI	CTAG	2 cut(s)	522, 1007

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.