MD15G1412400.v1.1

Aminotransferase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
Physical Location & Seq
Reverse (-)
51203329 .. 51206589
3261 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1412400.v1.1.491

Sequence Viewer

Length: 1527 bp
ATGTACAAGTTTCCTACAAGTTTTTCATCAATGTCCCATGCCCTGACATTGCAGCCTGTGATGATAATTCAGGCCTTCAGGTACTACTCTGCAATTCCTTTCAAAATTATAAGCTACCTCACTAGTTCACTACTCTTTCAGTTCTACCTATCCTCCATTTTCTGCAAACAACAACAACAAACCCTAGACCTTGCATTCACAAGTAATCATGCTCCATTGCACTTGCCACTTGATTTACTAATCTGTAACCTTTCCTTTGTTTGTCATTCACGCAGCTTCAAGAACGAAAAGGACCGATTGTTTGGTTGTCGTACGAAGGTAGCTCGCAATGCAAACATGGAGAAATTGCGGAATGGCCTGTTTCCTGAGATTTCAAGGCTGGAGCTTGAACACATTGAGAAGTACCCGAATGCAAAGTTGATAAGCCTCGGAATAGGCGACACAACAGAACCAATACCAGAAATCATCGCATCAAGCATGGCTAATTATGCACATGCCCTTTCGACCGCTGACGGTTATTCAGGGTACGGACCTGAACAAGGCAATAAGGCATTGCGGAAGGCAATTGTAAAAGCATTCTATAAAGATCTGCAGATAAAAGACACAGAAGTTTTCGTATCAGATGGTGCGCAGTGTGACATTACGCGACTTCAGTTGTTGCTGGGTTCCAAAGTGACCATAGCTGTGCAGGATCCATCATTTCCGGCTTACATCGACTCAAGTGTGATTATCGGTCAAGCTGGAGACGAAGGTGGGAGTGGAAGGTATGGGAGCATTGAGTACATGAAGTGCGGACACAAAAATAACTTCTTTCCGGACTTGGCAACCACTTCAAGAACAGATGTTATCTTCTTCTGCTCTCCAAACAACCCCACTGGTCATGCAGCAACTAGGGAGCAATTAGAGCTTCTTGTCAAGTTTGCCAGGGACAATGGATCCATTATCATCTTCGACGCTGCTTATTTGTCATATGTACAAGACGATAACTGCCCTCGTTCCATCTTTGAAATTCCCGGTTCTAGACAGGTTGCAATCGAAATATCATCATTCTCCAAGTTTGCTGGCTTCACTGGTGTCCGTCTAGGCTGGACAGTAGTGCCTGACGAGCTCTTATACTCGAATGGATTTCCTGTTATACACGACTTCAATCGCATTGTCAATACTTGCTTCACCGGGGCGTCCAATGTTGCTCAAGCTGGTGGACTCGCCTGTCTTTCCTCGCAAGGCTTCAAGGCTGTGAATTCTCTGGTTGACTACTACATGGAGAATGCAAATATACTGGGTGAGGCATTGTCTTCTGTTGGTTTACAAGTATACGGCGGTGCAAATGCTCCCTACATTTGGGTGCACTTTCCAGGTTCAAATTCTTGGGATTTATGCAAACACATTCTTGAGAAAACACACATAATTACAGTTCCGGGATCTGGATTTGGTCCGTTGGGTGAAGAGTTCCTGAGAATTAGTGCTTTTGGCCACAGAGAGTGTATCCTAGAGGCCGCAGCTAGGCTAAAATACCTATTTCTATAG

Protein Analysis

509

Amino Acids

56.1

Weight (kDa)

6.5

Isoelectric Point (pI)

44.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aminotran_1_2 PF00155 139 - 502 4.8e-38 Aminotransferase class I and II
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 110
AasI GACNNNNNNGTC 1 cut(s) 1209
Acc16I TGCGCA 1 cut(s) 630
AccI GTMKAC 1 cut(s) 1314
AccII CGCG 1 cut(s) 646
AccIII TCCGGA 1 cut(s) 814
AciI CCGC 6 cut(s) 349, 507, 556, 792, 1320, 1497
AclWI GGATC 5 cut(s) 686, 699, 930, 943, 1429
AcoI YGGCCR 1 cut(s) 1471
AcsI RAATTY 3 cut(s) 1008, 1240, 1363
AcuI CTGAAG 2 cut(s) 61, 635
AcyI GRCGYC 1 cut(s) 1178
AfaI GTAC 7 cut(s) 5, 83, 313, 404, 527, 782, 975
AfiI CCNNNNNNNGG 4 cut(s) 539, 1341, 1424, 1503
AgsI TTSAA 9 cut(s) 103, 280, 375, 389, 834, 1007, 1147, 1231, 1362
AhlI ACTAGT 1 cut(s) 122
AjnI CCWGG 2 cut(s) 923, 1354
Alw21I GWGCWC 2 cut(s) 1110, 1350
Alw26I GTCTC 1 cut(s) 738
Alw44I GTGCAC 1 cut(s) 1346
AlwI GGATC 5 cut(s) 686, 699, 930, 943, 1429
Aor13HI TCCGGA 1 cut(s) 814
AoxI GGCC 4 cut(s) 72, 355, 1471, 1494
ApaLI GTGCAC 1 cut(s) 1346
ApeKI GCWGC 5 cut(s) 52, 273, 884, 956, 1499
ApoI RAATTY 3 cut(s) 1008, 1240, 1363
ArsI GACNNNNNNTTYG 2 cut(s) 284, 316
AspLEI GCGC 1 cut(s) 631
AspS9I GGNCC 3 cut(s) 292, 530, 1433
AsuC2I CCSGG 3 cut(s) 1014, 1174, 1419
AsuHPI GGTGA 3 cut(s) 1162, 1295, 1454
AvaII GGWCC 3 cut(s) 292, 530, 1433
BaeGI GKGCMC 1 cut(s) 1350
BalI TGGCCA 1 cut(s) 1473
BamHI GGATCC 2 cut(s) 691, 935
BanII GRGCYC 1 cut(s) 1110
BbsI GAAGAC 1 cut(s) 1287
Bbv12I GWGCWC 2 cut(s) 1110, 1350
BbvI GCAGC 5 cut(s) 64, 285, 896, 943, 1511
BccI CCATC 3 cut(s) 617, 703, 1007
BceAI ACGGC 1 cut(s) 1333
BciT130I CCWGG 2 cut(s) 925, 1356
BciVI GTATCC 1 cut(s) 1496
BcnI CCSGG 3 cut(s) 1014, 1174, 1419
BcoDI GTCTC 1 cut(s) 738
BcuI ACTAGT 1 cut(s) 122
BfaI CTAG 7 cut(s) 123, 185, 891, 1020, 1082, 1490, 1503
BfmI CTRYAG 2 cut(s) 590, 1523
BfuI GTATCC 1 cut(s) 1496
BglII AGATCT 1 cut(s) 586
BisI GCNGC 6 cut(s) 53, 274, 885, 957, 1497, 1500
BlsI GCNGC 6 cut(s) 54, 275, 886, 958, 1498, 1501
Bme1390I CCNGG 5 cut(s) 925, 1014, 1174, 1356, 1419
Bme18I GGWCC 3 cut(s) 292, 530, 1433
BmgT120I GGNCC 3 cut(s) 292, 530, 1433
BmiI GGNNCC 3 cut(s) 667, 693, 937
BmrFI CCNGG 5 cut(s) 925, 1014, 1174, 1356, 1419
BmrI ACTGGG 1 cut(s) 1289
BmsI GCATC 1 cut(s) 479
BmuI ACTGGG 1 cut(s) 1289
BpiI GAAGAC 1 cut(s) 1287
BpmI CTGGAG 2 cut(s) 401, 762
BpuEI CTTGAG 3 cut(s) 703, 1176, 1412
BpuMI CCSGG 3 cut(s) 1014, 1174, 1419
BsaHI GRCGYC 1 cut(s) 1178
BsaJI CCNNGG 3 cut(s) 427, 924, 1173
BsaWI WCCGGW 1 cut(s) 814
BsaXI ACNNNNNCTCC 2 cut(s) 137, 167
Bsc4I CCNNNNNNNGG 4 cut(s) 539, 1341, 1424, 1503
Bse1I ACTGG 3 cut(s) 880, 1075, 1284
Bse3DI GCAATG 4 cut(s) 47, 215, 334, 551
BseAI TCCGGA 1 cut(s) 814
BseBI CCWGG 2 cut(s) 925, 1356
BseDI CCNNGG 3 cut(s) 427, 924, 1173
BseLI CCNNNNNNNGG 4 cut(s) 539, 1341, 1424, 1503
BseMI GCAATG 4 cut(s) 47, 215, 334, 551
BseMII CTCAG 2 cut(s) 357, 1445
BseNI ACTGG 3 cut(s) 880, 1075, 1284
BseSI GKGCMC 1 cut(s) 1350
BseXI GCAGC 5 cut(s) 64, 285, 896, 943, 1511
BseYI CCCAGC 1 cut(s) 661
BsgI GTGCAG 1 cut(s) 707
Bsh1236I CGCG 1 cut(s) 646
Bsh1285I CGRYCG 1 cut(s) 507
BshFI GGCC 4 cut(s) 74, 357, 1473, 1496
BsiEI CGRYCG 1 cut(s) 507
BsiHKAI GWGCWC 2 cut(s) 1110, 1350
BsiSI CCGG 5 cut(s) 704, 815, 1014, 1173, 1418
BsiWI CGTACG 1 cut(s) 311
BslFI GGGAC 2 cut(s) 19, 941
BslI CCNNNNNNNGG 4 cut(s) 539, 1341, 1424, 1503
BsmAI GTCTC 1 cut(s) 738
BsmBI CGTCTC 1 cut(s) 738
BsmFI GGGAC 2 cut(s) 19, 941
BsmI GAATGC 4 cut(s) 194, 415, 575, 1273
BsnI GGCC 4 cut(s) 74, 357, 1473, 1496
Bsp1286I GDGCHC 2 cut(s) 1110, 1350
Bsp13I TCCGGA 1 cut(s) 814
Bsp1407I TGTACA 2 cut(s) 3, 973
Bsp143I GATC 4 cut(s) 586, 691, 935, 1421
BspACI CCGC 6 cut(s) 349, 507, 556, 792, 1320, 1497
BspANI GGCC 4 cut(s) 74, 357, 1473, 1496
BspCNI CTCAG 2 cut(s) 358, 1446
BspEI TCCGGA 1 cut(s) 814
BspFNI CGCG 1 cut(s) 646
BspLI GGNNCC 3 cut(s) 667, 693, 937
BspMAI CTGCAG 1 cut(s) 594
BspPI GGATC 5 cut(s) 686, 699, 930, 943, 1429
BsrDI GCAATG 4 cut(s) 47, 215, 334, 551
BsrGI TGTACA 2 cut(s) 3, 973
BsrI ACTGG 3 cut(s) 880, 1075, 1284
BssECI CCNNGG 3 cut(s) 427, 924, 1173
BssMI GATC 4 cut(s) 586, 691, 935, 1421
BssNAI GTATAC 1 cut(s) 1315
BssNI GRCGYC 1 cut(s) 1178
Bst1107I GTATAC 1 cut(s) 1315
Bst2UI CCWGG 2 cut(s) 925, 1356
Bst4CI ACNGT 3 cut(s) 515, 1093, 1414
Bst6I CTCTTC 1 cut(s) 1440
BstACI GRCGYC 1 cut(s) 1178
BstAUI TGTACA 2 cut(s) 3, 973
BstC8I GCNNGC 2 cut(s) 325, 1063
BstDEI CTNAG 2 cut(s) 366, 1454
BstENI CCTNNNNNAGG 1 cut(s) 537
BstFNI CGCG 1 cut(s) 646
BstHHI GCGC 1 cut(s) 631
BstKTI GATC 4 cut(s) 589, 694, 938, 1424
BstMAI GTCTC 1 cut(s) 738
BstMBI GATC 4 cut(s) 586, 691, 935, 1421
BstMCI CGRYCG 1 cut(s) 507
BstMWI GCNNNNNNNGC 4 cut(s) 329, 488, 904, 1105
BstNI CCWGG 2 cut(s) 925, 1356
BstNSI RCATGY 1 cut(s) 497
BstSCI CCNGG 5 cut(s) 923, 1012, 1172, 1354, 1417
BstSFI CTRYAG 2 cut(s) 590, 1523
BstSLI GKGCMC 1 cut(s) 1350
BstUI CGCG 1 cut(s) 646
BstV1I GCAGC 5 cut(s) 64, 285, 896, 943, 1511
BstV2I GAAGAC 1 cut(s) 1287
BstX2I RGATCY 4 cut(s) 586, 691, 935, 1421
BstYI RGATCY 4 cut(s) 586, 691, 935, 1421
BstZ17I GTATAC 1 cut(s) 1315
BsuI GTATCC 1 cut(s) 1496
BsuRI GGCC 4 cut(s) 74, 357, 1473, 1496
BtgZI GCGATG 1 cut(s) 451
BtsI GCAGTG 1 cut(s) 638
BtsIMutI CAGTG 3 cut(s) 638, 873, 1068
Cac8I GCNNGC 2 cut(s) 325, 1063
CfoI GCGC 1 cut(s) 631
Cfr13I GGNCC 3 cut(s) 292, 530, 1433
CseI GACGC 2 cut(s) 962, 1167
Csp6I GTAC 7 cut(s) 4, 82, 312, 403, 526, 781, 974
CviAII CATG 8 cut(s) 38, 209, 337, 478, 494, 784, 881, 1261
CviQI GTAC 7 cut(s) 4, 82, 312, 403, 526, 781, 974
DdeI CTNAG 2 cut(s) 366, 1454
DpnI GATC 4 cut(s) 588, 693, 937, 1423
DpnII GATC 4 cut(s) 586, 691, 935, 1421
DrdI GACNNNNNNGTC 1 cut(s) 1209
DseDI GACNNNNNNGTC 1 cut(s) 1209
EaeI YGGCCR 1 cut(s) 1471
Eam1104I CTCTTC 1 cut(s) 1440
EarI CTCTTC 1 cut(s) 1440
Ecl136II GAGCTC 1 cut(s) 1108
Eco147I AGGCCT 1 cut(s) 74
Eco24I GRGCYC 1 cut(s) 1110
Eco47I GGWCC 3 cut(s) 292, 530, 1433
Eco53kI GAGCTC 1 cut(s) 1108
Eco57I CTGAAG 2 cut(s) 61, 635
EcoICRI GAGCTC 1 cut(s) 1108
EcoNI CCTNNNNNAGG 1 cut(s) 537
EcoRI GAATTC 1 cut(s) 1240
EcoRII CCWGG 2 cut(s) 923, 1354
EcoT38I GRGCYC 1 cut(s) 1110
Esp3I CGTCTC 1 cut(s) 738
FaeI CATG 8 cut(s) 41, 212, 340, 481, 497, 787, 884, 1264
FaqI GGGAC 2 cut(s) 19, 941
FatI CATG 8 cut(s) 37, 208, 336, 477, 493, 783, 880, 1260
FauNDI CATATG 1 cut(s) 970
FblI GTMKAC 1 cut(s) 1314
Fnu4HI GCNGC 6 cut(s) 53, 274, 885, 957, 1497, 1500
FriOI GRGCYC 1 cut(s) 1110
Fsp4HI GCNGC 6 cut(s) 53, 274, 885, 957, 1497, 1500
FspBI CTAG 7 cut(s) 123, 185, 891, 1020, 1082, 1490, 1503
FspI TGCGCA 1 cut(s) 630
GlaI GCGC 1 cut(s) 630
GluI GCNGC 6 cut(s) 53, 274, 885, 957, 1497, 1500
GsaI CCCAGC 1 cut(s) 665
GsuI CTGGAG 2 cut(s) 401, 762
HaeIII GGCC 4 cut(s) 74, 357, 1473, 1496
HapII CCGG 5 cut(s) 704, 815, 1014, 1173, 1418
HgaI GACGC 2 cut(s) 962, 1167
HhaI GCGC 1 cut(s) 631
Hin1I GRCGYC 1 cut(s) 1178
Hin1II CATG 8 cut(s) 41, 212, 340, 481, 497, 787, 884, 1264
Hin6I GCGC 1 cut(s) 629
HinP1I GCGC 1 cut(s) 629
HincII GTYRAC 1 cut(s) 1252
HindII GTYRAC 1 cut(s) 1252
HinfI GANTC 2 cut(s) 716, 1203
HpaII CCGG 5 cut(s) 704, 815, 1014, 1173, 1418
HphI GGTGA 3 cut(s) 1162, 1295, 1454
Hpy166II GTNNAC 6 cut(s) 128, 1202, 1252, 1307, 1315, 1348
Hpy188I TCNGA 2 cut(s) 431, 622
Hpy188III TCNNGA 8 cut(s) 280, 365, 815, 834, 1020, 1391, 1425, 1453
Hpy8I GTNNAC 6 cut(s) 128, 1202, 1252, 1307, 1315, 1348
Hpy99I CGWCG 1 cut(s) 956
HpyAV CCTTC 5 cut(s) 85, 310, 553, 743, 756
HpyCH4III ACNGT 3 cut(s) 515, 1093, 1414
HpyF10VI GCNNNNNNNGC 4 cut(s) 329, 488, 904, 1105
HpyF3I CTNAG 2 cut(s) 366, 1454
Hsp92I GRCGYC 1 cut(s) 1178
Hsp92II CATG 8 cut(s) 41, 212, 340, 481, 497, 787, 884, 1264
HspAI GCGC 1 cut(s) 629
Kpn2I TCCGGA 1 cut(s) 814
Kzo9I GATC 4 cut(s) 586, 691, 935, 1421
LmnI GCTCC 5 cut(s) 217, 382, 771, 895, 1336
Lsp1109I GCAGC 5 cut(s) 64, 285, 896, 943, 1511
LweI GCATC 1 cut(s) 479
MaeI CTAG 7 cut(s) 123, 185, 891, 1020, 1082, 1490, 1503
MaeIII GTNAC 3 cut(s) 245, 635, 673
MalI GATC 4 cut(s) 588, 693, 937, 1423
MboI GATC 4 cut(s) 586, 691, 935, 1421
MboII GAAGA 5 cut(s) 841, 844, 940, 1287, 1457
MfeI CAATTG 1 cut(s) 564
MflI RGATCY 4 cut(s) 586, 691, 935, 1421
MhlI GDGCHC 2 cut(s) 1110, 1350
MlsI TGGCCA 1 cut(s) 1473
MluNI TGGCCA 1 cut(s) 1473
MlyI GAGTC 2 cut(s) 710, 1197
MnlI CCTC 7 cut(s) 128, 163, 437, 1002, 1228, 1279, 1486
Mox20I TGGCCA 1 cut(s) 1473
MroI TCCGGA 1 cut(s) 814
MscI TGGCCA 1 cut(s) 1473
MslI CAYNNNNRTG 2 cut(s) 683, 1343
Msp20I TGGCCA 1 cut(s) 1473
MspA1I CMGCKG 1 cut(s) 509
MspI CCGG 5 cut(s) 704, 815, 1014, 1173, 1418
MspR9I CCNGG 5 cut(s) 925, 1014, 1174, 1356, 1419
MunI CAATTG 1 cut(s) 564
Mva1269I GAATGC 4 cut(s) 194, 415, 575, 1273
MvaI CCWGG 2 cut(s) 925, 1356
MvnI CGCG 1 cut(s) 646
MwoI GCNNNNNNNGC 4 cut(s) 329, 488, 904, 1105
NciI CCSGG 3 cut(s) 1014, 1174, 1419
NdeI CATATG 1 cut(s) 970
NdeII GATC 4 cut(s) 586, 691, 935, 1421
NlaIII CATG 8 cut(s) 41, 212, 340, 481, 497, 787, 884, 1264
NlaIV GGNNCC 3 cut(s) 667, 693, 937
NmuCI GTSAC 2 cut(s) 635, 673
NsbI TGCGCA 1 cut(s) 630
NspI RCATGY 1 cut(s) 497
PceI AGGCCT 1 cut(s) 74
PcsI WCGNNNNNNNCGW 1 cut(s) 435
PctI GAATGC 4 cut(s) 194, 415, 575, 1273
Pfl23II CGTACG 1 cut(s) 311
PfoI TCCNGGA 1 cut(s) 1417
PkrI GCNGC 6 cut(s) 54, 275, 886, 958, 1498, 1501
PleI GAGTC 2 cut(s) 710, 1197
PpsI GAGTC 2 cut(s) 710, 1197
PsiI TTATAA 1 cut(s) 110
Psp124BI GAGCTC 1 cut(s) 1110
Psp6I CCWGG 2 cut(s) 923, 1354
PspFI CCCAGC 1 cut(s) 661
PspGI CCWGG 2 cut(s) 923, 1354
PspLI CGTACG 1 cut(s) 311
PspN4I GGNNCC 3 cut(s) 667, 693, 937
PspPI GGNCC 3 cut(s) 292, 530, 1433
PstI CTGCAG 1 cut(s) 594
PsuI RGATCY 4 cut(s) 586, 691, 935, 1421
RsaI GTAC 7 cut(s) 5, 83, 313, 404, 527, 782, 975
RsaNI GTAC 7 cut(s) 4, 82, 312, 403, 526, 781, 974
RseI CAYNNNNRTG 2 cut(s) 683, 1343
SacI GAGCTC 1 cut(s) 1110
SatI GCNGC 6 cut(s) 53, 274, 885, 957, 1497, 1500
Sau3AI GATC 4 cut(s) 586, 691, 935, 1421
Sau96I GGNCC 3 cut(s) 292, 530, 1433
SchI GAGTC 2 cut(s) 710, 1197
ScrFI CCNGG 5 cut(s) 925, 1014, 1174, 1356, 1419
SduI GDGCHC 2 cut(s) 1110, 1350
SfaNI GCATC 1 cut(s) 479
SfcI CTRYAG 2 cut(s) 590, 1523
SinI GGWCC 3 cut(s) 292, 530, 1433
SmiMI CAYNNNNRTG 2 cut(s) 683, 1343
SmlI CTYRAG 3 cut(s) 718, 1191, 1391
SmoI CTYRAG 3 cut(s) 718, 1191, 1391
SpeI ACTAGT 1 cut(s) 122
SseBI AGGCCT 1 cut(s) 74
SsiI CCGC 6 cut(s) 349, 507, 556, 792, 1320, 1497
SspMI CTAG 7 cut(s) 123, 185, 891, 1020, 1082, 1490, 1503
SstI GAGCTC 1 cut(s) 1110
StuI AGGCCT 1 cut(s) 74
StyD4I CCNGG 5 cut(s) 923, 1012, 1172, 1354, 1417
TaaI ACNGT 3 cut(s) 515, 1093, 1414
TaqI TCGA 5 cut(s) 503, 714, 951, 1035, 1118
TaqII GACCGA 2 cut(s) 309, 722
TatI WGTACW 3 cut(s) 3, 780, 973
TauI GCSGC 1 cut(s) 1499
TscAI CASTG 3 cut(s) 638, 880, 1075
TseFI GTSAC 2 cut(s) 635, 673
TseI GCWGC 5 cut(s) 52, 273, 884, 956, 1499
Tsp45I GTSAC 2 cut(s) 635, 673
TspDTI ATGAA 2 cut(s) 15, 800
TspGWI ACGGA 3 cut(s) 543, 1067, 1425
TspRI CASTG 3 cut(s) 638, 880, 1075
VneI GTGCAC 1 cut(s) 1346
VpaK11BI GGWCC 3 cut(s) 292, 530, 1433
XagI CCTNNNNNAGG 1 cut(s) 537
XapI RAATTY 3 cut(s) 1008, 1240, 1363
XbaI TCTAGA 1 cut(s) 1019
XceI RCATGY 1 cut(s) 497
XmiI GTMKAC 1 cut(s) 1314
XspI CTAG 7 cut(s) 123, 185, 891, 1020, 1082, 1490, 1503
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.