Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0003005

Physical Location & Seq

Genomic Coordinates Reverse (-)

19230090 .. 19232187

Gene Structure 2098 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g19210.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGTCCGCTGCCATGACATTGCAGCCTGTGAGTTGTCGTACGAAGGTACCTCGCAATGCAAACATGGAGAAGCTGCGGAATGGCTATTTGTTTCCTGAGATTTCAAGGCTGGAGCTTGAACACATCGAGAAGTACCCGAATGCAAAGTTGATAAGCCTCGGAATCGGCGACACAACGGAACCAGTACCCCAAATCATCACGTCGACCATGGCTAATTATGCAAATGCCCTTTCCACCGCTGATGGCTATACAGGGTATGGACCTGAGCAAGGCCACAAGGCATTGCGGAAGGCAATTGTAAAAGCCTTCTATAAGGATCTGCAGATAAAAGACACAGAAGTTTTCGTATCCGATGGAGCGCAGTGTGACATTACTCGGCTTCAGTTGCTGCTGGGTTCCAAAGTGACCATAGCCGTGCAGGATCCATCCTTTCCGGCTTACATCGACTCAAGTGTGATAATAGGTCAGGCTGGAGATCTTAAAGGCGATGGCGAGAGGTATGGGAGCATTGAGTACATGAACTGTGGACCTGAAAATAACTTCTTTCCCGACTTGGCAACCACTCCAAGAGCAGATGTTATCTTCTTCTGCTCTCCAAACAACCCCACTGGTCATGCAGCAACCAGGAAGCAATTGGAGCTTCTTGTCAAGTTTGCCAGGGACAATGGATCCATTATCATCTTCGACTCTGCTTATTCGTCTTATGTACAAGATCGATCACTGCCCTCGTTCCATTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002376 GO:0003674 GO:0003824 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0007275 GO:0007568 GO:0008144 GO:0008150 GO:0008483 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009607 GO:0009617 GO:0009627 GO:0009719 GO:0009725 GO:0009735 GO:0009751 GO:0009814 GO:0009862 GO:0009863 GO:0009987 GO:0010033 GO:0010150 GO:0010285 GO:0014070 GO:0016740 GO:0016769 GO:0019842 GO:0023052 GO:0030170 GO:0032501 GO:0032502 GO:0032870 GO:0035690 GO:0036094 GO:0042221 GO:0042493 GO:0042742 GO:0043167 GO:0043168 GO:0043169 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0046677 GO:0046872 GO:0046914 GO:0048037 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050662 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0070279 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071407 GO:0071446 GO:0071495 GO:0090693 GO:0097159 GO:0098542 GO:0099402 GO:1901363 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko00300 ko01100 ko01110 ko01130 ko01230 map00300 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

Aminotran_1_2

Protein Analysis

247

Amino Acids

27.09

Weight (kDa)

5.83

Isoelectric Point (pI)

44.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003005)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G13810
fragaria_vesca	FvH4_5g30860 FvH4_5g30860 FvH4_5g38260 FvH4_5g38260 FvH4_5g38260 FvH4_5g38260 FvH4_5g38260
malus_domestica	MD08G1221500.v1.1 MD15G1412200.v1.1 MD15G1412400.v1.1
prunus_persica	Prupe.1G509100_v2.0.a1 Prupe.1G509100_v2.0.a1 Prupe.1G509500_v2.0.a1 Prupe.1G558600_v2.0.a1
pyrus_communis	pycom08g19210 pycom15g36710
rosa_chinensis	RchiOBHm_Chr7g0226031 RchiOBHm_Chr7g0240251
rosa_laevigata	RLG00000000691 RLG00000001773
rosa_multiflora	Rmu_sc0002676.1_g000021 Rmu_sc0004200.1_g000015
rosa_roxburghii	Rroxscaffold_3G00220280 Rroxscaffold_3G00233310
rosa_rugosa	Rorug07G0234200 Rorug07G0234300 Rorug07G0334400
rosa_samantha	Rh7AG369100 Rh7AG488400 Rh7BG368200 Rh7BG461300 Rh7CG387600 Rh7CG504500 Rh7DG379300 Rh7DG472600
rosa_wichuraiana	Rw0G020940 Rw7G040880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	46
AccB1I	GGYRCC	1 cut(s)	46
AccI	GTMKAC	1 cut(s)	203
AciI	CCGC	4 cut(s)	6, 76, 237, 286
AclWI	GGATC	5 cut(s)	324, 416, 429, 663, 676
AcuI	CTGAAG	1 cut(s)	365
AfaI	GTAC	6 cut(s)	40, 48, 134, 186, 515, 708
AfiI	CCNNNNNNNGG	1 cut(s)	269
AgsI	TTSAA	2 cut(s)	105, 119
AjiI	CACGTC	1 cut(s)	201
AjnI	CCWGG	2 cut(s)	623, 656
AluBI	AGCT	3 cut(s)	73, 115, 640
AluI	AGCT	3 cut(s)	73, 115, 640
AlwI	GGATC	5 cut(s)	324, 416, 429, 663, 676
AlwNI	CAGNNNCTG	1 cut(s)	388
AoxI	GGCC	1 cut(s)	271
ApeKI	GCWGC	5 cut(s)	8, 22, 73, 388, 617
Asp718I	GGTACC	1 cut(s)	46
AspLEI	GCGC	1 cut(s)	361
AspS9I	GGNCC	2 cut(s)	260, 527
AvaII	GGWCC	2 cut(s)	260, 527
BaeI	ACNNNNGTAYC	2 cut(s)	30, 63
BamHI	GGATCC	2 cut(s)	421, 668
BanI	GGYRCC	1 cut(s)	46
BbvI	GCAGC	4 cut(s)	34, 60, 375, 629
BccI	CCATC	4 cut(s)	236, 347, 433, 482
BceAI	ACGGC	1 cut(s)	398
BciT130I	CCWGG	2 cut(s)	625, 658
BciVI	GTATCC	1 cut(s)	358
BfmI	CTRYAG	1 cut(s)	320
BfuI	GTATCC	1 cut(s)	358
BglII	AGATCT	1 cut(s)	475
BisI	GCNGC	5 cut(s)	9, 23, 74, 389, 618
BlsI	GCNGC	5 cut(s)	10, 24, 75, 390, 619
Bme1390I	CCNGG	2 cut(s)	625, 658
Bme18I	GGWCC	2 cut(s)	260, 527
BmgBI	CACGTC	1 cut(s)	201
BmgT120I	GGNCC	2 cut(s)	260, 527
BmiI	GGNNCC	5 cut(s)	48, 180, 397, 423, 670
BmrFI	CCNGG	2 cut(s)	625, 658
BpmI	CTGGAG	2 cut(s)	131, 492
Bpu10I	CCTNAGC	1 cut(s)	264
BpuEI	CTTGAG	1 cut(s)	433
Bsa29I	ATCGAT	1 cut(s)	715
BsaJI	CCNNGG	3 cut(s)	157, 207, 657
Bsc4I	CCNNNNNNNGG	1 cut(s)	269
Bse1I	ACTGG	2 cut(s)	182, 613
Bse3DI	GCAATG	3 cut(s)	17, 61, 281
BseBI	CCWGG	2 cut(s)	625, 658
BseCI	ATCGAT	1 cut(s)	715
BseDI	CCNNGG	3 cut(s)	157, 207, 657
BseGI	GGATG	1 cut(s)	425
BseLI	CCNNNNNNNGG	1 cut(s)	269
BseMI	GCAATG	3 cut(s)	17, 61, 281
BseMII	CTCAG	2 cut(s)	87, 255
BseNI	ACTGG	2 cut(s)	182, 613
BseXI	GCAGC	4 cut(s)	34, 60, 375, 629
BseYI	CCCAGC	1 cut(s)	391
BsgI	GTGCAG	1 cut(s)	437
BshFI	GGCC	1 cut(s)	273
BshNI	GGYRCC	1 cut(s)	46
BshVI	ATCGAT	1 cut(s)	715
BsiSI	CCGG	1 cut(s)	434
BsiWI	CGTACG	1 cut(s)	38
BslFI	GGGAC	1 cut(s)	674
BslI	CCNNNNNNNGG	1 cut(s)	269
BsmFI	GGGAC	1 cut(s)	674
BsmI	GAATGC	1 cut(s)	145
BsnI	GGCC	1 cut(s)	273
Bsp1407I	TGTACA	1 cut(s)	706
Bsp143I	GATC	6 cut(s)	316, 421, 475, 668, 712, 716
Bsp19I	CCATGG	1 cut(s)	207
BspACI	CCGC	4 cut(s)	6, 76, 237, 286
BspANI	GGCC	1 cut(s)	273
BspCNI	CTCAG	2 cut(s)	88, 256
BspDI	ATCGAT	1 cut(s)	715
BspLI	GGNNCC	5 cut(s)	48, 180, 397, 423, 670
BspMAI	CTGCAG	1 cut(s)	324
BspPI	GGATC	5 cut(s)	324, 416, 429, 663, 676
BspT107I	GGYRCC	1 cut(s)	46
BsrDI	GCAATG	3 cut(s)	17, 61, 281
BsrGI	TGTACA	1 cut(s)	706
BsrI	ACTGG	2 cut(s)	182, 613
BssECI	CCNNGG	3 cut(s)	157, 207, 657
BssMI	GATC	6 cut(s)	316, 421, 475, 668, 712, 716
BssT1I	CCWWGG	1 cut(s)	207
Bst2UI	CCWGG	2 cut(s)	625, 658
Bst4CI	ACNGT	1 cut(s)	524
BstAUI	TGTACA	1 cut(s)	706
BstDEI	CTNAG	2 cut(s)	96, 264
BstDSI	CCRYGG	1 cut(s)	207
BstENI	CCTNNNNNAGG	1 cut(s)	267
BstF5I	GGATG	1 cut(s)	425
BstHHI	GCGC	1 cut(s)	361
BstKTI	GATC	6 cut(s)	319, 424, 478, 671, 715, 719
BstMBI	GATC	6 cut(s)	316, 421, 475, 668, 712, 716
BstMWI	GCNNNNNNNGC	3 cut(s)	218, 385, 637
BstNI	CCWGG	2 cut(s)	625, 658
BstSCI	CCNGG	2 cut(s)	623, 656
BstSFI	CTRYAG	1 cut(s)	320
BstV1I	GCAGC	4 cut(s)	34, 60, 375, 629
BstX2I	RGATCY	4 cut(s)	316, 421, 475, 668
BstYI	RGATCY	4 cut(s)	316, 421, 475, 668
Bsu15I	ATCGAT	1 cut(s)	715
BsuI	GTATCC	1 cut(s)	358
BsuRI	GGCC	1 cut(s)	273
BsuTUI	ATCGAT	1 cut(s)	715
BtgI	CCRYGG	1 cut(s)	207
BtgZI	GCGATG	1 cut(s)	501
BtrI	CACGTC	1 cut(s)	201
BtsCI	GGATG	1 cut(s)	425
BtsI	GCAGTG	2 cut(s)	368, 719
BtsIMutI	CAGTG	3 cut(s)	368, 606, 719
CaiI	CAGNNNCTG	1 cut(s)	388
CfoI	GCGC	1 cut(s)	361
Cfr13I	GGNCC	2 cut(s)	260, 527
ClaI	ATCGAT	1 cut(s)	715
Csp6I	GTAC	6 cut(s)	39, 47, 133, 185, 514, 707
CviAII	CATG	5 cut(s)	13, 64, 208, 517, 614
CviQI	GTAC	6 cut(s)	39, 47, 133, 185, 514, 707
DdeI	CTNAG	2 cut(s)	96, 264
DpnI	GATC	6 cut(s)	318, 423, 477, 670, 714, 718
DpnII	GATC	6 cut(s)	316, 421, 475, 668, 712, 716
Eco130I	CCWWGG	1 cut(s)	207
Eco47I	GGWCC	2 cut(s)	260, 527
Eco57I	CTGAAG	1 cut(s)	365
EcoNI	CCTNNNNNAGG	1 cut(s)	267
EcoRII	CCWGG	2 cut(s)	623, 656
EcoT14I	CCWWGG	1 cut(s)	207
ErhI	CCWWGG	1 cut(s)	207
FaeI	CATG	5 cut(s)	16, 67, 211, 520, 617
FaqI	GGGAC	1 cut(s)	674
FatI	CATG	5 cut(s)	12, 63, 207, 516, 613
FblI	GTMKAC	1 cut(s)	203
Fnu4HI	GCNGC	5 cut(s)	9, 23, 74, 389, 618
FokI	GGATG	1 cut(s)	412
Fsp4HI	GCNGC	5 cut(s)	9, 23, 74, 389, 618
GlaI	GCGC	1 cut(s)	360
GluI	GCNGC	5 cut(s)	9, 23, 74, 389, 618
GsaI	CCCAGC	1 cut(s)	395
GsuI	CTGGAG	2 cut(s)	131, 492
HaeIII	GGCC	1 cut(s)	273
HapII	CCGG	1 cut(s)	434
HhaI	GCGC	1 cut(s)	361
Hin1II	CATG	5 cut(s)	16, 67, 211, 520, 617
Hin6I	GCGC	1 cut(s)	359
HinP1I	GCGC	1 cut(s)	359
HincII	GTYRAC	1 cut(s)	204
HindII	GTYRAC	1 cut(s)	204
HinfI	GANTC	3 cut(s)	162, 446, 686
HpaII	CCGG	1 cut(s)	434
Hpy166II	GTNNAC	2 cut(s)	204, 527
Hpy188I	TCNGA	2 cut(s)	161, 352
Hpy188III	TCNNGA	3 cut(s)	95, 127, 548
Hpy8I	GTNNAC	2 cut(s)	204, 527
Hpy99I	CGWCG	1 cut(s)	205
HpyAV	CCTTC	3 cut(s)	37, 283, 316
HpyCH4III	ACNGT	1 cut(s)	524
HpyCH4IV	ACGT	1 cut(s)	200
HpyCH4V	TGCA	7 cut(s)	22, 59, 143, 221, 322, 418, 617
HpyF10VI	GCNNNNNNNGC	3 cut(s)	218, 385, 637
HpyF3I	CTNAG	2 cut(s)	96, 264
HpySE526I	ACGT	1 cut(s)	200
Hsp92II	CATG	5 cut(s)	16, 67, 211, 520, 617
HspAI	GCGC	1 cut(s)	359
KpnI	GGTACC	1 cut(s)	50
Kzo9I	GATC	6 cut(s)	316, 421, 475, 668, 712, 716
LmnI	GCTCC	4 cut(s)	112, 356, 504, 637
Lsp1109I	GCAGC	4 cut(s)	34, 60, 375, 629
MaeII	ACGT	1 cut(s)	200
MaeIII	GTNAC	2 cut(s)	365, 403
MalI	GATC	6 cut(s)	318, 423, 477, 670, 714, 718
MboI	GATC	6 cut(s)	316, 421, 475, 668, 712, 716
MboII	GAAGA	3 cut(s)	574, 577, 673
MfeI	CAATTG	2 cut(s)	294, 632
MflI	RGATCY	4 cut(s)	316, 421, 475, 668
MluCI	AATT	3 cut(s)	214, 294, 632
MlyI	GAGTC	2 cut(s)	440, 680
MnlI	CCTC	4 cut(s)	60, 167, 489, 736
MseI	TTAA	1 cut(s)	480
MslI	CAYNNNNRTG	1 cut(s)	413
MspA1I	CMGCKG	2 cut(s)	8, 239
MspI	CCGG	1 cut(s)	434
MspR9I	CCNGG	2 cut(s)	625, 658
MunI	CAATTG	2 cut(s)	294, 632
Mva1269I	GAATGC	1 cut(s)	145
MvaI	CCWGG	2 cut(s)	625, 658
MwoI	GCNNNNNNNGC	3 cut(s)	218, 385, 637
NcoI	CCATGG	1 cut(s)	207
NdeII	GATC	6 cut(s)	316, 421, 475, 668, 712, 716
NlaIII	CATG	5 cut(s)	16, 67, 211, 520, 617
NlaIV	GGNNCC	5 cut(s)	48, 180, 397, 423, 670
NmeAIII	GCCGAG	1 cut(s)	355
NmuCI	GTSAC	2 cut(s)	365, 403
PcsI	WCGNNNNNNNCGW	1 cut(s)	165
PctI	GAATGC	1 cut(s)	145
PfeI	GAWTC	1 cut(s)	162
Pfl23II	CGTACG	1 cut(s)	38
PkrI	GCNGC	5 cut(s)	10, 24, 75, 390, 619
PleI	GAGTC	2 cut(s)	440, 680
PpsI	GAGTC	2 cut(s)	440, 680
Psp6I	CCWGG	2 cut(s)	623, 656
PspFI	CCCAGC	1 cut(s)	391
PspGI	CCWGG	2 cut(s)	623, 656
PspLI	CGTACG	1 cut(s)	38
PspN4I	GGNNCC	5 cut(s)	48, 180, 397, 423, 670
PspPI	GGNCC	2 cut(s)	260, 527
PstI	CTGCAG	1 cut(s)	324
PstNI	CAGNNNCTG	1 cut(s)	388
PsuI	RGATCY	4 cut(s)	316, 421, 475, 668
RsaI	GTAC	6 cut(s)	40, 48, 134, 186, 515, 708
RsaNI	GTAC	6 cut(s)	39, 47, 133, 185, 514, 707
RseI	CAYNNNNRTG	1 cut(s)	413
SalI	GTCGAC	1 cut(s)	202
SaqAI	TTAA	1 cut(s)	480
SatI	GCNGC	5 cut(s)	9, 23, 74, 389, 618
Sau3AI	GATC	6 cut(s)	316, 421, 475, 668, 712, 716
Sau96I	GGNCC	2 cut(s)	260, 527
SchI	GAGTC	2 cut(s)	440, 680
ScrFI	CCNGG	2 cut(s)	625, 658
SfcI	CTRYAG	1 cut(s)	320
SinI	GGWCC	2 cut(s)	260, 527
SmiMI	CAYNNNNRTG	1 cut(s)	413
SmlI	CTYRAG	1 cut(s)	448
SmoI	CTYRAG	1 cut(s)	448
Sse9I	AATT	3 cut(s)	214, 294, 632
SsiI	CCGC	4 cut(s)	6, 76, 237, 286
StyD4I	CCNGG	2 cut(s)	623, 656
StyI	CCWWGG	1 cut(s)	207
TaaI	ACNGT	1 cut(s)	524
TaiI	ACGT	1 cut(s)	203
TaqI	TCGA	5 cut(s)	126, 203, 444, 684, 715
TasI	AATT	3 cut(s)	214, 294, 632
TatI	WGTACW	2 cut(s)	513, 706
TfiI	GAWTC	1 cut(s)	162
Tru1I	TTAA	1 cut(s)	480
Tru9I	TTAA	1 cut(s)	480
TscAI	CASTG	3 cut(s)	368, 613, 726
TseFI	GTSAC	2 cut(s)	365, 403
TseI	GCWGC	5 cut(s)	8, 22, 73, 388, 617
Tsp45I	GTSAC	2 cut(s)	365, 403
TspDTI	ATGAA	1 cut(s)	533
TspGWI	ACGGA	1 cut(s)	191
TspRI	CASTG	3 cut(s)	368, 613, 726
VpaK11BI	GGWCC	2 cut(s)	260, 527
XagI	CCTNNNNNAGG	1 cut(s)	267
XcmI	CCANNNNNNNNNTGG	1 cut(s)	631
XmiI	GTMKAC	1 cut(s)	203

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.