FvH4_6g10400

Regulatory-associated protein of TOR

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0002483
Physical Location & Seq
Reverse (-)
6206225 .. 6217183
10959 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g10400.t4

Sequence Viewer

Length: 4119 bp
ATGGCATTGGGGGATTTGATGGCCTCCAGGTTTTCGCAATCCTCGGTGGCCGTCGTCTCCAACCACTTCGACGACTGCGCTTCCAGCCACGACGACAGCGATTTGAGAAGAGAATCGGAGACTGCGAGTAGTAGTTACAATGAGAATGCCACCGCTACCACTACGAGCATGGCTTACTTGCCTCAGACCGTTGTGCTGTGTGAGCTCCGGCACGACTCGTTCGAGGCCAGAATGCCTACTGGTCCTTCTGATAGCGGATTGGTTTCGAAATGGCGCCCCAAAGACCGAATGAAGACGGGATGTGTAGCTCTAGTATTATGTTTAAACATTAGCGTTGATCCGCCCGATGTAATTAAGATATCTCCCTGTGCCAGAATGGAGTGCTGGATAGATCCATTTTCTATGGCTCCAACAAAAGCTCTTGAAACAATTGGTAAAACCTTGAGTACACAGTATGAAAGATGGCAACCAAGGGAAAAATACAGGCAACCAAGGGCAAAATACAGGGTCCAGCTCGATCCTACTGTAGATGAAATCAAGAAGCTTTGTAGTACATGCCGTAAAAATGCCAAGTCTGAGAGAGTTCTTTTCCATTATAATGGTCATGGGGTACCCAAGCCCACTGCTAATGGTGAAATTTGGCTATTTAATAAGAGCTATACACAGTATATTCCCTTGCCAATTAGTGACCTTGATTCCTGGTTAAAGACACCTTCAATCTATGTCTTTGACTGTTCTGCGGCTGGCATGATTATTAATTCATTCATTGAGCTTCATGACTTTGCTGGCTCTAGCTCTGGATCTCCAAGAGATTGTATCTTGCTTGCTGCCTGTGAAGCACACGAGACTCTTCCGCAGAGTGCTGAATTTCCTGCTGATGTCTTCACTTCTTGCCTCACAACTCCCATCAAGATGGCTTTAAGATGGTTCTGCACACGATCCTTACTTCATGAGTCTCTTGATTATTCACTGATAGATAAAATACCTGGCCGTCAAACTGATCGGAAAACCCTTTTGGGTGAACTGAACTGGATTTTTACTGCTGTCACTGACACGATTGCATGGAATGTTCTTCCTCATGATCTTTTCCAGAGACTATTCAGACAAGATCTTTTAGTTGCCAGCCTGTTTAGAAACTTTTTACTTGCAGAGCGGATTATGCGATCTGCAAACTGCTCTCCAATCTCTCATCCACAGTTGCCTTCTACTCATCAGCACCACATGTGGGATGCATGGGACATGGCAGCTGAGATATGCCTTTCTCAGCTTCCATTGTTGGTTGAGGATCCTAACGCTGAGTTTCAGCCAAGTCCATTTTTCACTGAGCAGTTGACTGCTTTTGAGGTATGGCTGGACCACGGGTCTGAACTCAAGAAACCACCGGAGCAGTTGCCTATTGTACTTCAGGTCTTACTTAGTCAATGCCATCGGTTTCGAGCTCTAGTTCTTCTCGGAAGATTCCTTGATATGGGACCCTGGGCTGTAGATCTGGCATTGTCTGTCGGAATATTTCCATATGTACTGAAGCTGTTGCAAACGATGACACCTGAACTACGACAGATTCTTGTATTCATTTGGACAAAAATTCTTGCACTGGATAAGTCATGCCAGGTGGATCTAGTGAAGGATGGGGGTCATACATATTTCATCAGGTTTCTTGATAGCATGGAAGCATATCCAGAGCAGCGTGCAATGGCTGCTTTTGTTTTGGCTGTAATAGTTGATGGCCATAGACGTGGCCAGGAAGCTTGTATTGAAGCAGGTTTAATCCATGTTTGTTTGAAGCACCTTCAGGGTTCAACACCAAATGACACACAAACTGAACCCCTATTTCTTCAGTGGCTATGCCTCTGTCTGGGGAAACTATGGGAGGATTTCACAGAGGCCCAAATATTTGGTTTGAAGGCAGATGCCCCGGCAATATGTGCTCCTCTGCTTGCTGAGCCCCAACCAGAGGTGAGGGCTTCTGCTGTTTTCGCATTGGGCACCCTGCTTGATGTGGGTTCAGGATCATGTAGAGAAGGCAATGGTGGAGATGATGAATATGATGATGATGAAAAGATCCGGGCTGAAGTTAGTATCATTAGAAGCCTATTAACTGTTGTTTCAGATGGAAGCCCTCTTGTCAGAGCAGAAGTTGCTGTCGCTCTAGGACGCTTTGCCTTTGGACACAACAAGCACCTGAAGTCAATTGCTGCTGCATATTGGAAACCACAGTCTAATTCTCTTCTGACTTCCTTGCCTACTTTGGTTACTATTAACGGTCCTGGTAGTGCTTCTTCTCAGATTGGTCCACTTTTAAGAGTTGGCAATGACAGCCCATCGGTTCGGGATGACAGAGTTTCTACCAGCAGTCCCCTGGCAAGTTCCGGAATTATGCATGGTTCGCCATTGTCTGACGATTTATCTCATCATTCTGATTCTGGAATATTAGATGATGGTGGGAGCAATGGGATTGTTAACCATTTGACACCCCAACCCCTGGACAATGCAATCTATTCTCAGTGTGTAGTGGCTATGTGTACCTTGGCCAAAGATCCATCTCCACGAATTGCAAAAATTGGTCGCCGAGTATTAGCTATTATAGGGATTGAACAAGTGGTGGCGAAACCTGTAAAGTCCGCCGGTATCAGTGTTCGCCCAGGTGAATCCATAGCAGCGTCCCAAAGTCCAAGTCTTGCTGGATTGGCTCGATCATCTTCATGGTTTGATATGAATGGAGGTCATTTGCCCTTCCGAACTCCACCTGTCAGCCCTCCTAGGGCAAATTACTTAACTGGAATGCGAAGAGTTTGCTCTCTAGAATTTAGGCCTCATCTGATGAGTCCAGATTCCGGATTAGCTGATCCTCTTTTAGGTTCTGGGGGAGCTTCTGGTGCCTCAGAACGAAGCTTTCTTCCTCAGTCAACAATCTACAATTGGAGTTGTGGTCACTTTTCCAAGCCACTTCTTACAGTGGCAGATGACAGTAAAGAAATAGTAACAAGAAGAGAGGAGAGAGAAAACTTTGCCATGGAGCATATAGCTAAATGCCGGCACTCATCTGTTAGCAAGCTTAATAATCAAATTGCAAGCTGGGACACAAAATTTGAGACGGGCACGAAAACCATCCTGCTGGAACCATTCTCTCCTATTGTAATCGCGGCTGATGAGAATGAACGAATCAGGGTATGGAATTACCAAGAGGCTAAGGAGGCTATCCTTCTGAATAGCTTTGATAACCATGATTTTCCAGACAAAGGAATCTCCAAGCTCTGCTTTGTGAATGAACTTGATGACAGTTTGCTTCTTGCTGCCTCAAGTGATGGAAACGTTCGGATTTGGAAAGATTATACTGTGAAGGGTAAACAGAAGCTTGTTACAGCATTTTCTTCAATTCAAGGACATAAACCTGGTGTGCGAAGTCTGAACGCTGTTGTGGATTGGCAGCAGCAATCTGGATATCTGTATGCCTCTGGTGAGCTATCATCCATTATGCTTTGGGATCTCGATAAGGAGCAGCTTGTTAATTCTATTCATTCTCAATCAGACTGTAGCATTTCAGCATTGGCTGCATCTCAAGTTCATGGAAGTCAACTCGCAGCTGGTTTTGTTGATGGTTCTGTTAGGCTTTATGATGTGCGATCTCCTGAAATGCTTGTCTGTGAAATGCGGCCACATGCTCAAAAGCTAGAAAGAGTTGTAGGAAACGTACAGAAGATGGAAAGAGGTGTTGGGAACACTCAGAAGGTAGAAAGAGTTGTGGGGATTGGCTTTCAACCAGGGCTTGATCCTTCTAAGATTGTAAGTGCATGTCAGGCTGGTGACATTCAGTTCCTTGATATCAGAAATAGTAGAGATCCCTACCTCACAATCGAAGCTCACAGGGGTTCACTCACAGCTTTAGCTGTTCATAGACACGCTCCGCTCATTGCCAGTGGTTCAGCCAAGCAACTCATAAAGGTCTTTAGTTTGGAGGGTGAACAATTAGGCACCATCAGATACTACCCATCCTTTATGGCCCAAAAAATTGGTCCTGTTAGCTGCCTCGCCTTCCATCCGTATGAAGTACTGCTTGCTGCTGGTGCTGCAGATGCTTGCGCGTCCATCTATGCCGACGACAACTCTCAAGGTAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000151 GO:0001101 GO:0001558 GO:0001932 GO:0001934 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008361 GO:0009267 GO:0009605 GO:0009719 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009893 GO:0009894 GO:0009987 GO:0009991 GO:0010033 GO:0010073 GO:0010074 GO:0010154 GO:0010243 GO:0010492 GO:0010506 GO:0010562 GO:0010604 GO:0016043 GO:0019220 GO:0019222 GO:0019827 GO:0022414 GO:0023052 GO:0030307 GO:0030674 GO:0031323 GO:0031325 GO:0031329 GO:0031399 GO:0031401 GO:0031461 GO:0031667 GO:0031668 GO:0031669 GO:0031929 GO:0031931 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0032535 GO:0032991 GO:0033554 GO:0033674 GO:0035556 GO:0038201 GO:0040008 GO:0042221 GO:0042325 GO:0042327 GO:0042594 GO:0043085 GO:0043200 GO:0043549 GO:0044093 GO:0044424 GO:0044464 GO:0045859 GO:0045860 GO:0045927 GO:0045937 GO:0048316 GO:0048507 GO:0048518 GO:0048522 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0051716 GO:0060090 GO:0060255 GO:0061458 GO:0065007 GO:0065008 GO:0065009 GO:0070887 GO:0071229 GO:0071230 GO:0071310 GO:0071417 GO:0071495 GO:0071496 GO:0071840 GO:0071900 GO:0071902 GO:0080008 GO:0080090 GO:0090066 GO:0098727 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1902494 GO:1990234
KEGG Pathways
Metabolic & Signaling
ko04136 ko04138 ko04140 ko04150 ko04151 ko04152 ko04211 ko04213 ko04714 ko04910 ko05206 map04136 map04138 map04140 map04150 map04151 map04152 map04211 map04213 map04714 map04910 map05206
Pfam Domains
Protein Families
HEAT Raptor_N WD40

Protein Analysis

1373

Amino Acids

150.95

Weight (kDa)

5.99

Isoelectric Point (pI)

45.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Raptor_N PF14538 1 - 152 2.4e-71 Raptor N-terminal CASPase like domain
WD40_WDHD1_1st PF24817 923 - 1117 1e-07 WDHD1 first WD40 domain
Beta-prop_WDR5 PF25175 943 - 1110 2e-12 WDR5 beta-propeller domain
Beta-prop_TEP1_2nd PF25047 943 - 1111 5.7e-06 TEP-1 second beta-propeller
WD40_Prp19 PF24814 959 - 1121 3.6e-11 Prp19 WD40 domain
WDR55 PF24796 990 - 1125 2e-06 WDR55
WD40_CDC20-Fz PF24807 1035 - 1120 5.7e-06 CDC20/Fizzy WD40 domain
Beta-prop_WDR3_1st PF25173 1047 - 1121 1.4e-06 WDR3 first beta-propeller domain
Beta-prop_WDR36-Utp21_1st PF25171 1054 - 1213 8e-06 WDR36/Utp21 first beta-propeller
Beta-prop_THOC3 PF25174 1146 - 1260 7.7e-06 THOC3 beta-propeller domain
WD40_CDC20-Fz PF24807 1155 - 1260 7.3e-06 CDC20/Fizzy WD40 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 597
Acc36I ACCTGC 1 cut(s) 1751
Acc65I GGTACC 1 cut(s) 610
AccB1I GGYRCC 5 cut(s) 273, 610, 1985, 2876, 3971
AccB7I CCANNNNNTGG 1 cut(s) 2482
AccBSI CCGCTC 2 cut(s) 1153, 3907
AccII CGCG 2 cut(s) 3143, 4082
AccIII TCCGGA 2 cut(s) 2369, 2834
AclI AACGTT 1 cut(s) 3312
AcoI YGGCCR 6 cut(s) 48, 988, 1726, 1738, 2529, 3653
AcsI RAATTY 5 cut(s) 636, 866, 1584, 2804, 3086
AcuI CTGAAG 6 cut(s) 1388, 1544, 1775, 1820, 2091, 2204
AcyI GRCGYC 1 cut(s) 274
AfaI GTAC 8 cut(s) 448, 553, 612, 1401, 1521, 2524, 3693, 4050
AfiI CCNNNNNNNGG 9 cut(s) 1225, 1468, 1855, 1954, 2482, 2761, 2834, 2855, 3239
AflIII ACRYGT 1 cut(s) 1221
AhdI GACNNNNNGTC 1 cut(s) 1360
AjiI CACGTC 1 cut(s) 1736
AjuI GAANNNNNNNTTGG 4 cut(s) 998, 1030, 3696, 3728
Alw21I GWGCWC 3 cut(s) 207, 1441, 1930
Alw26I GTCTC 6 cut(s) 61, 113, 839, 960, 1087, 3086
Aor13HI TCCGGA 2 cut(s) 2369, 2834
ApoI RAATTY 5 cut(s) 636, 866, 1584, 2804, 3086
ArsI GACNNNNNNTTYG 6 cut(s) 2659, 2691, 3071, 3103, 3997, 4029
AseI ATTAAT 1 cut(s) 756
Asp718I GGTACC 1 cut(s) 610
AspA2I CCTAGG 1 cut(s) 2759
AspLEI GCGC 3 cut(s) 80, 276, 4082
AspS9I GGNCC 9 cut(s) 242, 508, 1354, 1472, 1885, 2264, 2291, 4000, 4013
AsuC2I CCSGG 2 cut(s) 1916, 2066
AsuHPI GGTGA 7 cut(s) 644, 1031, 1969, 2657, 3470, 3815, 3971
AsuII TTCGAA 1 cut(s) 266
AvaII GGWCC 7 cut(s) 242, 508, 1354, 1472, 2264, 2291, 4013
AvrII CCTAGG 1 cut(s) 2759
BaeGI GKGCMC 2 cut(s) 1988, 3101
BalI TGGCCA 3 cut(s) 1728, 1740, 2531
BamHI GGATCC 1 cut(s) 1285
BanI GGYRCC 5 cut(s) 273, 610, 1985, 2876, 3971
BanII GRGCYC 3 cut(s) 207, 1441, 1947
BarI GAAGNNNNNNTAC 2 cut(s) 2263, 2295
BauI CACGAG 1 cut(s) 842
BbsI GAAGAC 2 cut(s) 299, 874
Bbv12I GWGCWC 3 cut(s) 207, 1441, 1930
BceAI ACGGC 3 cut(s) 35, 543, 975
BcgI CGANNNNNNTGC 2 cut(s) 2775, 2809
BcnI CCSGG 2 cut(s) 1916, 2066
BcoDI GTCTC 6 cut(s) 61, 113, 839, 960, 1087, 3086
BfaI CTAG 8 cut(s) 311, 792, 1442, 1619, 2150, 2760, 2801, 3671
BfmI CTRYAG 4 cut(s) 525, 1482, 3532, 4068
BfoI RGCGCY 1 cut(s) 277
BfuAI ACCTGC 1 cut(s) 1751
BglII AGATCT 2 cut(s) 1108, 1486
BlnI CCTAGG 1 cut(s) 2759
BlpI GCTNAGC 1 cut(s) 1941
BmcAI AGTACT 1 cut(s) 4050
Bme18I GGWCC 7 cut(s) 242, 508, 1354, 1472, 2264, 2291, 4013
BmeRI GACNNNNNGTC 1 cut(s) 1360
BmgBI CACGTC 1 cut(s) 1736
BmgT120I GGNCC 9 cut(s) 242, 508, 1354, 1472, 1885, 2264, 2291, 4000, 4013
BmsI GCATC 4 cut(s) 1219, 1900, 3563, 4063
BpiI GAAGAC 2 cut(s) 299, 874
BpmI CTGGAG 1 cut(s) 10
Bpu10I CCTNAGC 1 cut(s) 3189
Bpu1102I GCTNAGC 1 cut(s) 1941
Bpu14I TTCGAA 1 cut(s) 266
BpuEI CTTGAG 5 cut(s) 463, 1355, 3283, 3543, 4092
BpuMI CCSGG 2 cut(s) 1916, 2066
BsaHI GRCGYC 1 cut(s) 274
BsaWI WCCGGW 3 cut(s) 1381, 2369, 2834
BsaXI ACNNNNNCTCC 2 cut(s) 2914, 2944
Bsc4I CCNNNNNNNGG 9 cut(s) 1225, 1468, 1855, 1954, 2482, 2761, 2834, 2855, 3239
Bse118I RCCGGY 2 cut(s) 2624, 3033
Bse1I ACTGG 5 cut(s) 244, 1034, 1599, 2782, 3915
Bse3DI GCAATG 5 cut(s) 1698, 2032, 2317, 2455, 3909
BseAI TCCGGA 2 cut(s) 2369, 2834
BseGI GGATG 9 cut(s) 305, 1189, 1234, 1633, 2338, 3108, 3467, 3989, 4036
BseLI CCNNNNNNNGG 9 cut(s) 1225, 1468, 1855, 1954, 2482, 2761, 2834, 2855, 3239
BseMI GCAATG 5 cut(s) 1698, 2032, 2317, 2455, 3909
BseNI ACTGG 5 cut(s) 244, 1034, 1599, 2782, 3915
BseRI GAGGAG 2 cut(s) 1920, 3008
BseSI GKGCMC 2 cut(s) 1988, 3101
BseYI CCCAGC 1 cut(s) 3075
BsgI GTGCAG 1 cut(s) 916
Bsh1236I CGCG 2 cut(s) 3143, 4082
BshNI GGYRCC 5 cut(s) 273, 610, 1985, 2876, 3971
BsiHKAI GWGCWC 3 cut(s) 207, 1441, 1930
BsiSI CCGG 8 cut(s) 208, 1382, 1916, 2065, 2370, 2625, 2835, 3034
BslFI GGGAC 5 cut(s) 1250, 1485, 2340, 2647, 3092
BslI CCNNNNNNNGG 9 cut(s) 1225, 1468, 1855, 1954, 2482, 2761, 2834, 2855, 3239
BsmAI GTCTC 6 cut(s) 61, 113, 839, 960, 1087, 3086
BsmBI CGTCTC 2 cut(s) 61, 3086
BsmFI GGGAC 5 cut(s) 1250, 1485, 2340, 2647, 3092
BsmI GAATGC 3 cut(s) 151, 237, 2787
Bsp119I TTCGAA 1 cut(s) 266
Bsp1286I GDGCHC 6 cut(s) 207, 1441, 1930, 1947, 1988, 3101
Bsp13I TCCGGA 2 cut(s) 2369, 2834
Bsp1720I GCTNAGC 1 cut(s) 1941
Bsp19I CCATGG 1 cut(s) 3012
BspEI TCCGGA 2 cut(s) 2369, 2834
BspFNI CGCG 2 cut(s) 3143, 4082
BspHI TCATGA 3 cut(s) 775, 949, 1078
BspMAI CTGCAG 1 cut(s) 4072
BspMI ACCTGC 1 cut(s) 1751
BspT104I TTCGAA 1 cut(s) 266
BspT107I GGYRCC 5 cut(s) 273, 610, 1985, 2876, 3971
BsrBI CCGCTC 2 cut(s) 1153, 3907
BsrDI GCAATG 5 cut(s) 1698, 2032, 2317, 2455, 3909
BsrFI RCCGGY 2 cut(s) 2624, 3033
BsrI ACTGG 5 cut(s) 244, 1034, 1599, 2782, 3915
BssAI RCCGGY 2 cut(s) 2624, 3033
BssNI GRCGYC 1 cut(s) 274
BssSI CACGAG 1 cut(s) 842
BssT1I CCWWGG 5 cut(s) 470, 491, 2526, 2759, 3012
Bst2BI CACGAG 1 cut(s) 842
Bst6I CTCTTC 5 cut(s) 103, 855, 2232, 2782, 2983
BstACI GRCGYC 1 cut(s) 274
BstAPI GCANNNNNTGC 4 cut(s) 1697, 1925, 2138, 3551
BstBI TTCGAA 1 cut(s) 266
BstDSI CCRYGG 2 cut(s) 1357, 3012
BstENI CCTNNNNNAGG 1 cut(s) 2853
BstF5I GGATG 9 cut(s) 305, 1189, 1234, 1633, 2338, 3108, 3467, 3989, 4036
BstFNI CGCG 2 cut(s) 3143, 4082
BstH2I RGCGCY 1 cut(s) 277
BstHHI GCGC 3 cut(s) 80, 276, 4082
BstMAI GTCTC 6 cut(s) 61, 113, 839, 960, 1087, 3086
BstNSI RCATGY 4 cut(s) 558, 1225, 3662, 3795
BstSFI CTRYAG 4 cut(s) 525, 1482, 3532, 4068
BstSLI GKGCMC 2 cut(s) 1988, 3101
BstUI CGCG 2 cut(s) 3143, 4082
BstV2I GAAGAC 2 cut(s) 299, 874
BstXI CCANNNNNNTGG 6 cut(s) 599, 913, 1736, 1895, 3115, 4010
BtgI CCRYGG 2 cut(s) 1357, 3012
BtrI CACGTC 1 cut(s) 1736
BtsCI GGATG 9 cut(s) 305, 1189, 1234, 1633, 2338, 3108, 3467, 3989, 4036
BtsI GCAGTG 1 cut(s) 621
BveI ACCTGC 1 cut(s) 1751
CciI TCATGA 3 cut(s) 775, 949, 1078
CfoI GCGC 3 cut(s) 80, 276, 4082
Cfr10I RCCGGY 2 cut(s) 2624, 3033
Cfr13I GGNCC 9 cut(s) 242, 508, 1354, 1472, 1885, 2264, 2291, 4000, 4013
CseI GACGC 3 cut(s) 2163, 2649, 4071
CsiI ACCWGGT 1 cut(s) 3391
Csp6I GTAC 8 cut(s) 447, 552, 611, 1400, 1520, 2523, 3692, 4049
CviQI GTAC 8 cut(s) 447, 552, 611, 1400, 1520, 2523, 3692, 4049
DinI GGCGCC 1 cut(s) 275
DraI TTTAAA 1 cut(s) 324
DriI GACNNNNNGTC 1 cut(s) 1360
EaeI YGGCCR 6 cut(s) 48, 988, 1726, 1738, 2529, 3653
Eam1104I CTCTTC 5 cut(s) 103, 855, 2232, 2782, 2983
Eam1105I GACNNNNNGTC 1 cut(s) 1360
EarI CTCTTC 5 cut(s) 103, 855, 2232, 2782, 2983
EciI GGCGGA 2 cut(s) 330, 2611
Ecl136II GAGCTC 2 cut(s) 205, 1439
Eco130I CCWWGG 5 cut(s) 470, 491, 2526, 2759, 3012
Eco147I AGGCCT 1 cut(s) 2812
Eco24I GRGCYC 3 cut(s) 207, 1441, 1947
Eco32I GATATC 3 cut(s) 360, 3443, 3823
Eco47I GGWCC 7 cut(s) 242, 508, 1354, 1472, 2264, 2291, 4013
Eco53kI GAGCTC 2 cut(s) 205, 1439
Eco57I CTGAAG 6 cut(s) 1388, 1544, 1775, 1820, 2091, 2204
EcoICRI GAGCTC 2 cut(s) 205, 1439
EcoNI CCTNNNNNAGG 1 cut(s) 2853
EcoO109I RGGNCCY 1 cut(s) 1472
EcoRV GATATC 3 cut(s) 360, 3443, 3823
EcoT14I CCWWGG 5 cut(s) 470, 491, 2526, 2759, 3012
EcoT22I ATGCAT 2 cut(s) 1234, 2382
EcoT38I GRGCYC 3 cut(s) 207, 1441, 1947
EgeI GGCGCC 1 cut(s) 275
EheI GGCGCC 1 cut(s) 275
ErhI CCWWGG 5 cut(s) 470, 491, 2526, 2759, 3012
Esp3I CGTCTC 2 cut(s) 61, 3086
FalI AAGNNNNNCTT 4 cut(s) 3242, 3274, 4038, 4070
FaqI GGGAC 5 cut(s) 1250, 1485, 2340, 2647, 3092
FauNDI CATATG 1 cut(s) 1516
FokI GGATG 9 cut(s) 312, 1176, 1241, 1640, 2345, 3095, 3454, 3976, 4023
FriOI GRGCYC 3 cut(s) 207, 1441, 1947
FspBI CTAG 8 cut(s) 311, 792, 1442, 1619, 2150, 2760, 2801, 3671
GlaI GCGC 3 cut(s) 79, 275, 4081
GsaI CCCAGC 1 cut(s) 3079
GsuI CTGGAG 1 cut(s) 10
HaeII RGCGCY 1 cut(s) 277
HapII CCGG 8 cut(s) 208, 1382, 1916, 2065, 2370, 2625, 2835, 3034
HgaI GACGC 3 cut(s) 2163, 2649, 4071
HhaI GCGC 3 cut(s) 80, 276, 4082
Hin1I GRCGYC 1 cut(s) 274
Hin6I GCGC 3 cut(s) 78, 274, 4080
HinP1I GCGC 3 cut(s) 78, 274, 4080
HincII GTYRAC 4 cut(s) 1332, 2461, 2907, 3575
HindII GTYRAC 4 cut(s) 1332, 2461, 2907, 3575
HindIII AAGCTT 5 cut(s) 542, 1746, 2890, 3053, 3353
HpaI GTTAAC 1 cut(s) 2461
HpaII CCGG 8 cut(s) 208, 1382, 1916, 2065, 2370, 2625, 2835, 3034
HphI GGTGA 7 cut(s) 644, 1031, 1969, 2657, 3470, 3815, 3971
Hpy99I CGWCG 4 cut(s) 56, 74, 95, 4100
HpyCH4IV ACGT 3 cut(s) 1735, 3312, 3690
HpySE526I ACGT 3 cut(s) 1735, 3312, 3690
Hsp92I GRCGYC 1 cut(s) 274
HspAI GCGC 3 cut(s) 78, 274, 4080
KasI GGCGCC 1 cut(s) 273
KflI GGGWCCC 1 cut(s) 1472
Kpn2I TCCGGA 2 cut(s) 2369, 2834
KpnI GGTACC 1 cut(s) 614
KroI GCCGGC 1 cut(s) 3033
KroNI GCCGGC 1 cut(s) 3035
KspAI GTTAAC 1 cut(s) 2461
LmnI GCTCC 9 cut(s) 210, 412, 1384, 1933, 2445, 2867, 3016, 3496, 3907
LweI GCATC 4 cut(s) 1219, 1900, 3563, 4063
MabI ACCWGGT 1 cut(s) 3391
MaeI CTAG 8 cut(s) 311, 792, 1442, 1619, 2150, 2760, 2801, 3671
MaeII ACGT 3 cut(s) 1735, 3312, 3690
MaeIII GTNAC 8 cut(s) 134, 686, 1045, 2251, 2930, 2980, 3358, 3803
MbiI CCGCTC 2 cut(s) 1153, 3907
MfeI CAATTG 3 cut(s) 429, 2190, 2917
MhlI GDGCHC 6 cut(s) 207, 1441, 1930, 1947, 1988, 3101
MlsI TGGCCA 3 cut(s) 1728, 1740, 2531
MluNI TGGCCA 3 cut(s) 1728, 1740, 2531
Mly113I GGCGCC 1 cut(s) 274
MlyI GAGTC 4 cut(s) 209, 841, 962, 2833
MmeI TCCRAC 3 cut(s) 84, 434, 1483
Mox20I TGGCCA 3 cut(s) 1728, 1740, 2531
Mph1103I ATGCAT 2 cut(s) 1234, 2382
MroI TCCGGA 2 cut(s) 2369, 2834
MroNI GCCGGC 1 cut(s) 3033
MscI TGGCCA 3 cut(s) 1728, 1740, 2531
MslI CAYNNNNRTG 5 cut(s) 597, 911, 1734, 2701, 4041
Msp20I TGGCCA 3 cut(s) 1728, 1740, 2531
MspA1I CMGCKG 2 cut(s) 1247, 3584
MspI CCGG 8 cut(s) 208, 1382, 1916, 2065, 2370, 2625, 2835, 3034
MssI GTTTAAAC 1 cut(s) 324
MunI CAATTG 3 cut(s) 429, 2190, 2917
Mva1269I GAATGC 3 cut(s) 151, 237, 2787
MvnI CGCG 2 cut(s) 3143, 4082
NaeI GCCGGC 1 cut(s) 3035
NarI GGCGCC 1 cut(s) 274
NciI CCSGG 2 cut(s) 1916, 2066
NcoI CCATGG 1 cut(s) 3012
NdeI CATATG 1 cut(s) 1516
NgoMIV GCCGGC 1 cut(s) 3033
NmeAIII GCCGAG 1 cut(s) 2594
NmuCI GTSAC 4 cut(s) 686, 1045, 2930, 3803
NsiI ATGCAT 2 cut(s) 1234, 2382
NspI RCATGY 4 cut(s) 558, 1225, 3662, 3795
NspV TTCGAA 1 cut(s) 266
PagI TCATGA 3 cut(s) 775, 949, 1078
PasI CCCWGGG 1 cut(s) 1476
PceI AGGCCT 1 cut(s) 2812
PciI ACATGT 1 cut(s) 1221
PcsI WCGNNNNNNNCGW 3 cut(s) 96, 122, 219
PctI GAATGC 3 cut(s) 151, 237, 2787
PdiI GCCGGC 1 cut(s) 3035
PfeI GAWTC 9 cut(s) 113, 695, 1458, 1561, 2420, 2648, 2831, 3162, 3243
PflMI CCANNNNNTGG 1 cut(s) 2482
PleI GAGTC 4 cut(s) 209, 841, 961, 2832
PluTI GGCGCC 1 cut(s) 277
PmeI GTTTAAAC 1 cut(s) 324
PpsI GAGTC 4 cut(s) 209, 841, 961, 2832
PpuMI RGGWCCY 1 cut(s) 1472
PscI ACATGT 1 cut(s) 1221
PshBI ATTAAT 1 cut(s) 756
PsiI TTATAA 1 cut(s) 597
Psp124BI GAGCTC 2 cut(s) 207, 1441
Psp1406I AACGTT 1 cut(s) 3312
Psp5II RGGWCCY 1 cut(s) 1472
PspFI CCCAGC 1 cut(s) 3075
PspPI GGNCC 9 cut(s) 242, 508, 1354, 1472, 1885, 2264, 2291, 4000, 4013
PspPPI RGGWCCY 1 cut(s) 1472
PstI CTGCAG 1 cut(s) 4072
PvuII CAGCTG 2 cut(s) 1247, 3584
RsaI GTAC 8 cut(s) 448, 553, 612, 1401, 1521, 2524, 3693, 4050
RsaNI GTAC 8 cut(s) 447, 552, 611, 1400, 1520, 2523, 3692, 4049
RseI CAYNNNNRTG 5 cut(s) 597, 911, 1734, 2701, 4041
SacI GAGCTC 2 cut(s) 207, 1441
Sau96I GGNCC 9 cut(s) 242, 508, 1354, 1472, 1885, 2264, 2291, 4000, 4013
ScaI AGTACT 1 cut(s) 4050
SchI GAGTC 4 cut(s) 209, 841, 962, 2833
SduI GDGCHC 6 cut(s) 207, 1441, 1930, 1947, 1988, 3101
SexAI ACCWGGT 1 cut(s) 3391
SfaNI GCATC 4 cut(s) 1219, 1900, 3563, 4063
SfcI CTRYAG 4 cut(s) 525, 1482, 3532, 4068
SfoI GGCGCC 1 cut(s) 275
SfuI TTCGAA 1 cut(s) 266
SinI GGWCC 7 cut(s) 242, 508, 1354, 1472, 2264, 2291, 4013
SmiMI CAYNNNNRTG 5 cut(s) 597, 911, 1734, 2701, 4041
SmlI CTYRAG 5 cut(s) 442, 1370, 3298, 3558, 4107
SmoI CTYRAG 5 cut(s) 442, 1370, 3298, 3558, 4107
SseBI AGGCCT 1 cut(s) 2812
SspDI GGCGCC 1 cut(s) 273
SspI AATATT 3 cut(s) 1509, 1893, 2430
SspMI CTAG 8 cut(s) 311, 792, 1442, 1619, 2150, 2760, 2801, 3671
SstI GAGCTC 2 cut(s) 207, 1441
StuI AGGCCT 1 cut(s) 2812
StyI CCWWGG 5 cut(s) 470, 491, 2526, 2759, 3012
TaiI ACGT 3 cut(s) 1738, 3315, 3693
TaqI TCGA 8 cut(s) 69, 222, 266, 516, 1435, 2692, 3489, 3855
TaqII GACCGA 1 cut(s) 300
TatI WGTACW 5 cut(s) 446, 551, 1399, 1519, 4048
TauI GCSGC 3 cut(s) 743, 3146, 3655
TfiI GAWTC 9 cut(s) 113, 695, 1458, 1561, 2420, 2648, 2831, 3162, 3243
TseFI GTSAC 4 cut(s) 686, 1045, 2930, 3803
Tsp45I GTSAC 4 cut(s) 686, 1045, 2930, 3803
TspGWI ACGGA 1 cut(s) 4029
Van91I CCANNNNNTGG 1 cut(s) 2482
VpaK11BI GGWCC 7 cut(s) 242, 508, 1354, 1472, 2264, 2291, 4013
VspI ATTAAT 1 cut(s) 756
XagI CCTNNNNNAGG 1 cut(s) 2853
XapI RAATTY 5 cut(s) 636, 866, 1584, 2804, 3086
XbaI TCTAGA 1 cut(s) 2800
XceI RCATGY 4 cut(s) 558, 1225, 3662, 3795
XcmI CCANNNNNNNNNTGG 2 cut(s) 166, 2356
XmaJI CCTAGG 1 cut(s) 2759
XspI CTAG 8 cut(s) 311, 792, 1442, 1619, 2150, 2760, 2801, 3671
ZrmI AGTACT 1 cut(s) 4050
Zsp2I ATGCAT 2 cut(s) 1234, 2382
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.