Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0002483

Physical Location & Seq

Genomic Coordinates Reverse (-)

26404285 .. 26406751

Gene Structure 2467 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1183800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGAGCTTGATGACAACTTGCTGCTGCTTCAAGCAAGATTCTATACGACCAAAAAATATGCTTCTTGGTGATGGAAACATTCGAATTTGGAAAGATTACACTTTGAAGGGTCAACAGAAGCTTGTCACTGCATTTTCTTCAATTCAAGGTCATAAATCTGGGGTGCGAAGTTTGAATGCTGTTGTGGATTGGGAACAACAATCTGGATATCTGTATGCTTCTGGTGACTATCATCCATTATGCTTTGGGATCTGGATAAAAAACAGCTTATTAATTCTATTCCTTCTTCATCACATTGTAGCATCTCAGCACTATGTTTCTACTTCTCAAGTTCATGAGGGTCAACTTGCAGCTGGTTTTGTAGACGGTTCTGTCAGACTCTATGATGTGCGAACTCCTGAAATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000151 GO:0001101 GO:0001558 GO:0001932 GO:0001934 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008361 GO:0009267 GO:0009605 GO:0009719 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009893 GO:0009894 GO:0009987 GO:0009991 GO:0010033 GO:0010073 GO:0010074 GO:0010154 GO:0010243 GO:0010492 GO:0010506 GO:0010562 GO:0010604 GO:0016043 GO:0019220 GO:0019222 GO:0019827 GO:0022414 GO:0023052 GO:0030307 GO:0030674 GO:0031323 GO:0031325 GO:0031329 GO:0031399 GO:0031401 GO:0031461 GO:0031667 GO:0031668 GO:0031669 GO:0031929 GO:0031931 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0032535 GO:0032991 GO:0033554 GO:0033674 GO:0035556 GO:0038201 GO:0040008 GO:0042221 GO:0042325 GO:0042327 GO:0042594 GO:0043085 GO:0043200 GO:0043549 GO:0044093 GO:0044424 GO:0044464 GO:0045859 GO:0045860 GO:0045927 GO:0045937 GO:0048316 GO:0048507 GO:0048518 GO:0048522 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0051716 GO:0060090 GO:0060255 GO:0061458 GO:0065007 GO:0065008 GO:0065009 GO:0070887 GO:0071229 GO:0071230 GO:0071310 GO:0071417 GO:0071495 GO:0071496 GO:0071840 GO:0071900 GO:0071902 GO:0080008 GO:0080090 GO:0090066 GO:0098727 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04136 ko04138 ko04140 ko04150 ko04151 ko04152 ko04211 ko04213 ko04714 ko04910 ko05206 map04136 map04138 map04140 map04150 map04151 map04152 map04211 map04213 map04714 map04910 map05206

Pfam Domains

Protein Families

HEAT Raptor_N WD40

Protein Analysis

136

Amino Acids

15.21

Weight (kDa)

8.37

Isoelectric Point (pI)

42.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002483)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G08850 AT5G01770 AT5G01770 AT5G01770 AT5G01770 AT5G01770
fragaria_vesca	FvH4_6g10400 FvH4_6g10400 FvH4_6g10400 FvH4_6g10400 FvH4_6g10400
malus_domestica	MD04G1169600.v1.1 MD12G1183600.v1.1 MD12G1183800.v1.1
prunus_persica	Prupe.6G288100_v2.0.a1 Prupe.6G288100_v2.0.a1
pyrus_communis	pycom04g15040 pycom04g15060 pycom12g17220
rosa_chinensis	RchiOBHm_Chr3g0461291 RchiOBHm_Chr3g0492271 RchiOBHm_Chr3g0492281
rosa_laevigata	RLG00000022786 RLG00000024943
rosa_multiflora	Rmu_ssc0000326.1_g000006
rosa_roxburghii	Rroxscaffold_6G00392440 Rroxscaffold_6G00418430 Rroxscaffold_6G00418720
rosa_rugosa	Rorug03G0049400 Rorug03G0049400
rosa_samantha	Rh3AG106900 Rh3AG303000 Rh3BG111000 Rh3BG338300 Rh3BG338500 Rh3CG112900 Rh3CG336100 Rh3DG113000 Rh3DG338100
rosa_wichuraiana	Rw3G009150 Rw3G026720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	371
AccI	GTMKAC	1 cut(s)	363
AclWI	GGATC	1 cut(s)	257
AcsI	RAATTY	1 cut(s)	84
AgsI	TTSAA	5 cut(s)	31, 106, 141, 146, 175
AluBI	AGCT	4 cut(s)	6, 121, 267, 353
AluI	AGCT	4 cut(s)	6, 121, 267, 353
AlwI	GGATC	1 cut(s)	257
ApeKI	GCWGC	3 cut(s)	21, 24, 350
ApoI	RAATTY	1 cut(s)	84
AseI	ATTAAT	1 cut(s)	272
AsuHPI	GGTGA	2 cut(s)	80, 236
AsuII	TTCGAA	1 cut(s)	82
BbvI	GCAGC	3 cut(s)	8, 11, 362
BccI	CCATC	1 cut(s)	65
BisI	GCNGC	3 cut(s)	22, 25, 351
BlsI	GCNGC	3 cut(s)	23, 26, 352
BmsI	GCATC	1 cut(s)	311
Bpu14I	TTCGAA	1 cut(s)	82
BpuEI	CTTGAG	1 cut(s)	312
BseGI	GGATG	1 cut(s)	232
BseMII	CTCAG	1 cut(s)	320
BseXI	GCAGC	3 cut(s)	8, 11, 362
BsmI	GAATGC	1 cut(s)	181
Bsp119I	TTCGAA	1 cut(s)	82
Bsp143I	GATC	1 cut(s)	249
BspCNI	CTCAG	1 cut(s)	319
BspHI	TCATGA	1 cut(s)	334
BspPI	GGATC	1 cut(s)	257
BspT104I	TTCGAA	1 cut(s)	82
BssMI	GATC	1 cut(s)	249
Bst4CI	ACNGT	1 cut(s)	368
BstBI	TTCGAA	1 cut(s)	82
BstDEI	CTNAG	1 cut(s)	306
BstF5I	GGATG	1 cut(s)	232
BstKTI	GATC	1 cut(s)	252
BstMBI	GATC	1 cut(s)	249
BstV1I	GCAGC	3 cut(s)	8, 11, 362
BstX2I	RGATCY	1 cut(s)	249
BstYI	RGATCY	1 cut(s)	249
BtsCI	GGATG	1 cut(s)	232
BtsI	GCAGTG	1 cut(s)	126
BtsIMutI	CAGTG	1 cut(s)	126
CciI	TCATGA	1 cut(s)	334
CviAII	CATG	1 cut(s)	335
CviJI	RGCY	4 cut(s)	6, 121, 267, 353
CviKI_1	RGCY	4 cut(s)	6, 121, 267, 353
DdeI	CTNAG	1 cut(s)	306
DpnI	GATC	1 cut(s)	251
DpnII	GATC	1 cut(s)	249
DrdI	GACNNNNNNGTC	1 cut(s)	371
DseDI	GACNNNNNNGTC	1 cut(s)	371
Eco32I	GATATC	1 cut(s)	209
EcoRV	GATATC	1 cut(s)	209
FaeI	CATG	1 cut(s)	338
FaiI	YATR	8 cut(s)	44, 59, 153, 216, 241, 315, 336, 384
FatI	CATG	1 cut(s)	334
FblI	GTMKAC	1 cut(s)	363
Fnu4HI	GCNGC	3 cut(s)	22, 25, 351
FokI	GGATG	1 cut(s)	219
Fsp4HI	GCNGC	3 cut(s)	22, 25, 351
GluI	GCNGC	3 cut(s)	22, 25, 351
Hin1II	CATG	1 cut(s)	338
HincII	GTYRAC	2 cut(s)	113, 344
HindII	GTYRAC	2 cut(s)	113, 344
HindIII	AAGCTT	1 cut(s)	119
HinfI	GANTC	2 cut(s)	38, 378
HphI	GGTGA	2 cut(s)	80, 236
Hpy166II	GTNNAC	3 cut(s)	113, 344, 364
Hpy188I	TCNGA	1 cut(s)	377
Hpy188III	TCNNGA	4 cut(s)	204, 253, 335, 398
Hpy8I	GTNNAC	3 cut(s)	113, 344, 364
HpyAV	CCTTC	2 cut(s)	100, 293
HpyCH4III	ACNGT	1 cut(s)	368
HpyCH4V	TGCA	2 cut(s)	131, 350
HpyF3I	CTNAG	1 cut(s)	306
Hsp92II	CATG	1 cut(s)	338
Kzo9I	GATC	1 cut(s)	249
LpnPI	CCDG	5 cut(s)	144, 189, 207, 238, 339
Lsp1109I	GCAGC	3 cut(s)	8, 11, 362
LweI	GCATC	1 cut(s)	311
MaeIII	GTNAC	2 cut(s)	124, 224
MalI	GATC	1 cut(s)	251
MboI	GATC	1 cut(s)	249
MboII	GAAGA	2 cut(s)	129, 278
MflI	RGATCY	1 cut(s)	249
MluCI	AATT	3 cut(s)	84, 141, 273
MlyI	GAGTC	1 cut(s)	372
MnlI	CCTC	1 cut(s)	331
MseI	TTAA	1 cut(s)	272
MspA1I	CMGCKG	1 cut(s)	353
Mva1269I	GAATGC	1 cut(s)	181
NdeII	GATC	1 cut(s)	249
NlaIII	CATG	1 cut(s)	338
NmuCI	GTSAC	2 cut(s)	124, 224
NspV	TTCGAA	1 cut(s)	82
PagI	TCATGA	1 cut(s)	334
PctI	GAATGC	1 cut(s)	181
PfeI	GAWTC	1 cut(s)	38
PkrI	GCNGC	3 cut(s)	23, 26, 352
PleI	GAGTC	1 cut(s)	372
PpsI	GAGTC	1 cut(s)	372
PshBI	ATTAAT	1 cut(s)	272
PsuI	RGATCY	1 cut(s)	249
PvuII	CAGCTG	1 cut(s)	353
SaqAI	TTAA	1 cut(s)	272
SatI	GCNGC	3 cut(s)	22, 25, 351
Sau3AI	GATC	1 cut(s)	249
SchI	GAGTC	1 cut(s)	372
SetI	ASST	5 cut(s)	8, 123, 151, 269, 355
SfaNI	GCATC	1 cut(s)	311
SfuI	TTCGAA	1 cut(s)	82
SmlI	CTYRAG	1 cut(s)	327
SmoI	CTYRAG	1 cut(s)	327
Sse9I	AATT	3 cut(s)	84, 141, 273
TaaI	ACNGT	1 cut(s)	368
TaqI	TCGA	1 cut(s)	82
TasI	AATT	3 cut(s)	84, 141, 273
TfiI	GAWTC	1 cut(s)	38
Tru1I	TTAA	1 cut(s)	272
Tru9I	TTAA	1 cut(s)	272
TscAI	CASTG	1 cut(s)	133
TseFI	GTSAC	2 cut(s)	124, 224
TseI	GCWGC	3 cut(s)	21, 24, 350
Tsp45I	GTSAC	2 cut(s)	124, 224
TspDTI	ATGAA	2 cut(s)	278, 323
TspRI	CASTG	1 cut(s)	133
VspI	ATTAAT	1 cut(s)	272
XapI	RAATTY	1 cut(s)	84
XmiI	GTMKAC	1 cut(s)	363

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.