RchiOBHm_Chr3g0492271

Regulatory-associated protein of TOR

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0002483
Physical Location & Seq
Reverse (-)
39032117 .. 39032473
357 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ45516

Sequence Viewer

Length: 357 bp
ATGTACGTTGCCTTCATACAGATAGTAAGTACATGTCAGGCTGGTGACATTCAGTTCCTTGATATCAGAAGTAGTAAAGATCCCTACCTCACAATCGAAGCTCATAGGGGTTCACTCACAGCTTTAGCTGTTCATAGACACGCCCCACTCATTGCCAGTGGTGGCTCAGCCAAGCAGCTCATGACTGTCTTTAGTTTGGAGGGCGAACAATTAGGCACCATTAGATACTACCCTTCCTTTATGGCCCAAAAAATTGGTCCTGTTAGTTGCCTAGCCTTCCATCCGTATGTACTGCTTGCTACTGGTGCTGCAGATGCTTGCGCGTCCATCTATGCCGATGACAACTCTCTAAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000151 GO:0001101 GO:0001558 GO:0001932 GO:0001934 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008361 GO:0009267 GO:0009605 GO:0009719 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009893 GO:0009894 GO:0009987 GO:0009991 GO:0010033 GO:0010073 GO:0010074 GO:0010154 GO:0010243 GO:0010492 GO:0010506 GO:0010562 GO:0010604 GO:0016043 GO:0019220 GO:0019222 GO:0019827 GO:0022414 GO:0023052 GO:0030307 GO:0030674 GO:0031323 GO:0031325 GO:0031329 GO:0031399 GO:0031401 GO:0031461 GO:0031667 GO:0031668 GO:0031669 GO:0031929 GO:0031931 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0032535 GO:0032991 GO:0033554 GO:0033674 GO:0035556 GO:0038201 GO:0040008 GO:0042221 GO:0042325 GO:0042327 GO:0042594 GO:0043085 GO:0043200 GO:0043549 GO:0044093 GO:0044424 GO:0044464 GO:0045859 GO:0045860 GO:0045927 GO:0045937 GO:0048316 GO:0048507 GO:0048518 GO:0048522 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0051716 GO:0060090 GO:0060255 GO:0061458 GO:0065007 GO:0065008 GO:0065009 GO:0070887 GO:0071229 GO:0071230 GO:0071310 GO:0071417 GO:0071495 GO:0071496 GO:0071840 GO:0071900 GO:0071902 GO:0080008 GO:0080090 GO:0090066 GO:0098727 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1902494 GO:1990234
KEGG Pathways
Metabolic & Signaling
ko04136 ko04138 ko04140 ko04150 ko04151 ko04152 ko04211 ko04213 ko04714 ko04910 ko05206 map04136 map04138 map04140 map04150 map04151 map04152 map04211 map04213 map04714 map04910 map05206
Pfam Domains
Protein Families
HEAT Raptor_N WD40

Protein Analysis

118

Amino Acids

12.73

Weight (kDa)

6.38

Isoelectric Point (pI)

37.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WD40_CDC20-Fz PF24807 8 - 110 1.4e-06 CDC20/Fizzy WD40 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 215
AccII CGCG 1 cut(s) 323
AclWI GGATC 1 cut(s) 74
AfaI GTAC 3 cut(s) 5, 31, 291
AflIII ACRYGT 1 cut(s) 32
AluBI AGCT 4 cut(s) 101, 122, 128, 178
AluI AGCT 4 cut(s) 101, 122, 128, 178
AlwI GGATC 1 cut(s) 74
AoxI GGCC 1 cut(s) 243
ApeKI GCWGC 2 cut(s) 175, 308
ArsI GACNNNNNNTTYG 2 cut(s) 241, 273
AspLEI GCGC 1 cut(s) 323
AspS9I GGNCC 2 cut(s) 244, 257
AsuHPI GGTGA 1 cut(s) 56
AvaII GGWCC 1 cut(s) 257
BanI GGYRCC 1 cut(s) 215
BarI GAAGNNNNNNTAC 1 cut(s) 28
BbvI GCAGC 2 cut(s) 187, 295
BccI CCATC 2 cut(s) 288, 335
BfaI CTAG 1 cut(s) 272
BfmI CTRYAG 1 cut(s) 309
BisI GCNGC 2 cut(s) 176, 309
BlpI GCTNAGC 1 cut(s) 166
BlsI GCNGC 2 cut(s) 177, 310
Bme18I GGWCC 1 cut(s) 257
BmgT120I GGNCC 2 cut(s) 244, 257
BmiI GGNNCC 1 cut(s) 217
BmsI GCATC 1 cut(s) 304
Bpu1102I GCTNAGC 1 cut(s) 166
Bse1I ACTGG 2 cut(s) 156, 307
Bse3DI GCAATG 1 cut(s) 150
BseGI GGATG 1 cut(s) 280
BseMI GCAATG 1 cut(s) 150
BseMII CTCAG 1 cut(s) 180
BseNI ACTGG 2 cut(s) 156, 307
BseXI GCAGC 2 cut(s) 187, 295
Bsh1236I CGCG 1 cut(s) 323
BshFI GGCC 1 cut(s) 245
BshNI GGYRCC 1 cut(s) 215
BsnI GGCC 1 cut(s) 245
Bsp143I GATC 1 cut(s) 79
Bsp1720I GCTNAGC 1 cut(s) 166
BspANI GGCC 1 cut(s) 245
BspCNI CTCAG 1 cut(s) 179
BspFNI CGCG 1 cut(s) 323
BspHI TCATGA 1 cut(s) 180
BspLI GGNNCC 1 cut(s) 217
BspMAI CTGCAG 1 cut(s) 313
BspPI GGATC 1 cut(s) 74
BspT107I GGYRCC 1 cut(s) 215
BsrDI GCAATG 1 cut(s) 150
BsrI ACTGG 2 cut(s) 156, 307
BssMI GATC 1 cut(s) 79
Bst4CI ACNGT 1 cut(s) 187
BstC8I GCNNGC 2 cut(s) 297, 319
BstDEI CTNAG 2 cut(s) 166, 350
BstF5I GGATG 1 cut(s) 280
BstFNI CGCG 1 cut(s) 323
BstHHI GCGC 1 cut(s) 323
BstKTI GATC 1 cut(s) 82
BstMBI GATC 1 cut(s) 79
BstMWI GCNNNNNNNGC 2 cut(s) 305, 314
BstNSI RCATGY 1 cut(s) 36
BstSFI CTRYAG 1 cut(s) 309
BstUI CGCG 1 cut(s) 323
BstV1I GCAGC 2 cut(s) 187, 295
BstX2I RGATCY 1 cut(s) 79
BstXI CCANNNNNNTGG 1 cut(s) 254
BstYI RGATCY 1 cut(s) 79
BsuRI GGCC 1 cut(s) 245
BtsCI GGATG 1 cut(s) 280
BtsIMutI CAGTG 1 cut(s) 163
Cac8I GCNNGC 2 cut(s) 297, 319
CciI TCATGA 1 cut(s) 180
CfoI GCGC 1 cut(s) 323
Cfr13I GGNCC 2 cut(s) 244, 257
CseI GACGC 1 cut(s) 312
Csp6I GTAC 3 cut(s) 4, 30, 290
CviAII CATG 2 cut(s) 33, 181
CviJI RGCY 9 cut(s) 41, 101, 122, 128, 165, 170, 178, 245, 275
CviKI_1 RGCY 9 cut(s) 41, 101, 122, 128, 165, 170, 178, 245, 275
CviQI GTAC 3 cut(s) 4, 30, 290
DdeI CTNAG 2 cut(s) 166, 350
DpnI GATC 1 cut(s) 81
DpnII GATC 1 cut(s) 79
Eco32I GATATC 1 cut(s) 64
Eco47I GGWCC 1 cut(s) 257
EcoRV GATATC 1 cut(s) 64
FaeI CATG 2 cut(s) 36, 184
FaiI YATR 8 cut(s) 17, 34, 105, 135, 182, 242, 288, 333
FatI CATG 2 cut(s) 32, 180
Fnu4HI GCNGC 2 cut(s) 176, 309
FokI GGATG 1 cut(s) 267
Fsp4HI GCNGC 2 cut(s) 176, 309
FspBI CTAG 1 cut(s) 272
GlaI GCGC 1 cut(s) 322
GluI GCNGC 2 cut(s) 176, 309
HaeIII GGCC 1 cut(s) 245
HgaI GACGC 1 cut(s) 312
HhaI GCGC 1 cut(s) 323
Hin1II CATG 2 cut(s) 36, 184
Hin6I GCGC 1 cut(s) 321
HinP1I GCGC 1 cut(s) 321
HphI GGTGA 1 cut(s) 56
Hpy166II GTNNAC 1 cut(s) 113
Hpy188I TCNGA 1 cut(s) 68
Hpy188III TCNNGA 1 cut(s) 181
Hpy8I GTNNAC 1 cut(s) 113
HpyAV CCTTC 3 cut(s) 22, 243, 286
HpyCH4III ACNGT 1 cut(s) 187
HpyCH4IV ACGT 1 cut(s) 6
HpyCH4V TGCA 1 cut(s) 311
HpyF10VI GCNNNNNNNGC 2 cut(s) 305, 314
HpyF3I CTNAG 2 cut(s) 166, 350
HpySE526I ACGT 1 cut(s) 6
Hsp92II CATG 2 cut(s) 36, 184
HspAI GCGC 1 cut(s) 321
Kzo9I GATC 1 cut(s) 79
LpnPI CCDG 5 cut(s) 23, 27, 169, 273, 288
Lsp1109I GCAGC 2 cut(s) 187, 295
LweI GCATC 1 cut(s) 304
MaeI CTAG 1 cut(s) 272
MaeII ACGT 1 cut(s) 6
MaeIII GTNAC 1 cut(s) 44
MalI GATC 1 cut(s) 81
MboI GATC 1 cut(s) 79
MflI RGATCY 1 cut(s) 79
MluCI AATT 2 cut(s) 209, 252
MnlI CCTC 2 cut(s) 98, 193
MslI CAYNNNNRTG 1 cut(s) 285
MvnI CGCG 1 cut(s) 323
MwoI GCNNNNNNNGC 2 cut(s) 305, 314
NdeII GATC 1 cut(s) 79
NlaIII CATG 2 cut(s) 36, 184
NlaIV GGNNCC 1 cut(s) 217
NmuCI GTSAC 1 cut(s) 44
NspI RCATGY 1 cut(s) 36
PagI TCATGA 1 cut(s) 180
PciI ACATGT 1 cut(s) 32
PkrI GCNGC 2 cut(s) 177, 310
PscI ACATGT 1 cut(s) 32
PspN4I GGNNCC 1 cut(s) 217
PspPI GGNCC 2 cut(s) 244, 257
PstI CTGCAG 1 cut(s) 313
PsuI RGATCY 1 cut(s) 79
RsaI GTAC 3 cut(s) 5, 31, 291
RsaNI GTAC 3 cut(s) 4, 30, 290
RseI CAYNNNNRTG 1 cut(s) 285
SatI GCNGC 2 cut(s) 176, 309
Sau3AI GATC 1 cut(s) 79
Sau96I GGNCC 2 cut(s) 244, 257
SetI ASST 7 cut(s) 9, 90, 103, 124, 130, 180, 356
SfaNI GCATC 1 cut(s) 304
SfcI CTRYAG 1 cut(s) 309
SinI GGWCC 1 cut(s) 257
SmiMI CAYNNNNRTG 1 cut(s) 285
Sse9I AATT 2 cut(s) 209, 252
SspMI CTAG 1 cut(s) 272
TaaI ACNGT 1 cut(s) 187
TaiI ACGT 1 cut(s) 9
TaqI TCGA 1 cut(s) 96
TasI AATT 2 cut(s) 209, 252
TatI WGTACW 2 cut(s) 29, 289
TscAI CASTG 1 cut(s) 163
TseFI GTSAC 1 cut(s) 44
TseI GCWGC 2 cut(s) 175, 308
Tsp45I GTSAC 1 cut(s) 44
TspDTI ATGAA 2 cut(s) 4, 122
TspGWI ACGGA 1 cut(s) 273
TspRI CASTG 1 cut(s) 163
VpaK11BI GGWCC 1 cut(s) 257
XceI RCATGY 1 cut(s) 36
XspI CTAG 1 cut(s) 272
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.