Rh3CG336100

Regulatory-associated protein of TOR

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0002483
Physical Location & Seq
Reverse (-)
37454441 .. 37456272
1832 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG336100.1

Sequence Viewer

Length: 702 bp
ATGTATATTCCGTGTTATTATTGGTCAGCTGTTAGCAAGCTTAATAATCAAACTGCAAGCTGGGACACAAAATTTGAAACGGGTACGAAAAGCATTTTGCTGGAACCATTCTCTCGTATTGTGATTGCGGCTGATGAGAATGAACGAATCAGGGTATGGAATTACCAAGAGACTAAGGAGGTTATCCTCCTGAACAGCTTTGGTAACCATGATTTTCCAGACAAGGGAATCTCCAAGCTTTGCTTTGTGAATGAACTTGATGACAGCTTGCTTCTTGCTGCCTCAAGAAACGCACAGAAGATAGAAAGAGCTGTTGGGAACACTCAGAAGGTAGAAAGAGTTGTGGGGATTGGCTTTCAACCGGGGCTTGATCCTTCTAAGGCTGGTGACATTCAGTTCCTTGATATCAGAAGTAGTACAGATCCCTACCTCACAATCGAAGCTCATAGGGGTTCACTCACAGCTTTAGCTGTTCATAGACACGCCCCGGTCATTGCCAGTGGTGGCTCTGCCAAGCAGCTCATGAAAGTCTTTAGTTTGGAGGGCGAACAATTAGGCACCATTAGATACTACCCTTCCTTTATGGCCCAAAAAATTGGTCCTGTTAGTTGCCTAGCCTTCCATCCTTATGAAGTACTGCTTGCTACTGGTGCTGCAGATGCTTGCGCGTCCATCTATGCCGATGACAACTCTCTAAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000151 GO:0001101 GO:0001558 GO:0001932 GO:0001934 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008361 GO:0009267 GO:0009605 GO:0009719 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009893 GO:0009894 GO:0009987 GO:0009991 GO:0010033 GO:0010073 GO:0010074 GO:0010154 GO:0010243 GO:0010492 GO:0010506 GO:0010562 GO:0010604 GO:0016043 GO:0019220 GO:0019222 GO:0019827 GO:0022414 GO:0023052 GO:0030307 GO:0030674 GO:0031323 GO:0031325 GO:0031329 GO:0031399 GO:0031401 GO:0031461 GO:0031667 GO:0031668 GO:0031669 GO:0031929 GO:0031931 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0032535 GO:0032991 GO:0033554 GO:0033674 GO:0035556 GO:0038201 GO:0040008 GO:0042221 GO:0042325 GO:0042327 GO:0042594 GO:0043085 GO:0043200 GO:0043549 GO:0044093 GO:0044424 GO:0044464 GO:0045859 GO:0045860 GO:0045927 GO:0045937 GO:0048316 GO:0048507 GO:0048518 GO:0048522 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0051716 GO:0060090 GO:0060255 GO:0061458 GO:0065007 GO:0065008 GO:0065009 GO:0070887 GO:0071229 GO:0071230 GO:0071310 GO:0071417 GO:0071495 GO:0071496 GO:0071840 GO:0071900 GO:0071902 GO:0080008 GO:0080090 GO:0090066 GO:0098727 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1902494 GO:1990234
KEGG Pathways
Metabolic & Signaling
ko04136 ko04138 ko04140 ko04150 ko04151 ko04152 ko04211 ko04213 ko04714 ko04910 ko05206 map04136 map04138 map04140 map04150 map04151 map04152 map04211 map04213 map04714 map04910 map05206
Pfam Domains
Protein Families
HEAT Raptor_N WD40

Protein Analysis

233

Amino Acids

25.71

Weight (kDa)

5.96

Isoelectric Point (pI)

27.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 557
AccII CGCG 1 cut(s) 668
AciI CCGC 1 cut(s) 128
AclWI GGATC 2 cut(s) 365, 416
AcsI RAATTY 1 cut(s) 71
AfaI GTAC 3 cut(s) 85, 418, 636
AfiI CCNNNNNNNGG 1 cut(s) 224
AgsI TTSAA 2 cut(s) 77, 359
AjuI GAANNNNNNNTTGG 2 cut(s) 297, 329
Alw26I GTCTC 1 cut(s) 164
AlwI GGATC 2 cut(s) 365, 416
AoxI GGCC 1 cut(s) 585
ApeKI GCWGC 3 cut(s) 278, 517, 653
ApoI RAATTY 1 cut(s) 71
ArsI GACNNNNNNTTYG 4 cut(s) 56, 88, 583, 615
AspLEI GCGC 1 cut(s) 668
AspS9I GGNCC 2 cut(s) 586, 599
AsuC2I CCSGG 2 cut(s) 363, 488
AsuHPI GGTGA 1 cut(s) 398
AvaII GGWCC 1 cut(s) 599
BanI GGYRCC 1 cut(s) 557
BbvI GCAGC 3 cut(s) 265, 529, 640
BccI CCATC 2 cut(s) 630, 680
BcnI CCSGG 2 cut(s) 363, 488
BcoDI GTCTC 1 cut(s) 164
BfaI CTAG 1 cut(s) 614
BfmI CTRYAG 1 cut(s) 654
BisI GCNGC 4 cut(s) 129, 279, 518, 654
BlsI GCNGC 4 cut(s) 130, 280, 519, 655
BmcAI AGTACT 1 cut(s) 636
Bme1390I CCNGG 2 cut(s) 363, 488
Bme18I GGWCC 1 cut(s) 599
BmgT120I GGNCC 2 cut(s) 586, 599
BmiI GGNNCC 2 cut(s) 105, 559
BmrFI CCNGG 2 cut(s) 363, 488
BmsI GCATC 1 cut(s) 649
BpuEI CTTGAG 1 cut(s) 268
BpuMI CCSGG 2 cut(s) 363, 488
BsaJI CCNNGG 2 cut(s) 362, 486
Bsc4I CCNNNNNNNGG 1 cut(s) 224
Bse1I ACTGG 2 cut(s) 498, 652
Bse3DI GCAATG 1 cut(s) 492
BseDI CCNNGG 2 cut(s) 362, 486
BseGI GGATG 1 cut(s) 622
BseLI CCNNNNNNNGG 1 cut(s) 224
BseMI GCAATG 1 cut(s) 492
BseMII CTCAG 1 cut(s) 338
BseNI ACTGG 2 cut(s) 498, 652
BseXI GCAGC 3 cut(s) 265, 529, 640
BseYI CCCAGC 1 cut(s) 60
Bsh1236I CGCG 1 cut(s) 668
BshFI GGCC 1 cut(s) 587
BshNI GGYRCC 1 cut(s) 557
BsiSI CCGG 2 cut(s) 362, 488
BslFI GGGAC 1 cut(s) 77
BslI CCNNNNNNNGG 1 cut(s) 224
BsmAI GTCTC 1 cut(s) 164
BsmFI GGGAC 1 cut(s) 77
BsnI GGCC 1 cut(s) 587
Bsp143I GATC 2 cut(s) 370, 421
BspACI CCGC 1 cut(s) 128
BspANI GGCC 1 cut(s) 587
BspCNI CTCAG 1 cut(s) 337
BspFNI CGCG 1 cut(s) 668
BspHI TCATGA 1 cut(s) 522
BspLI GGNNCC 2 cut(s) 105, 559
BspMAI CTGCAG 1 cut(s) 658
BspPI GGATC 2 cut(s) 365, 416
BspT107I GGYRCC 1 cut(s) 557
BsrDI GCAATG 1 cut(s) 492
BsrI ACTGG 2 cut(s) 498, 652
BssECI CCNNGG 2 cut(s) 362, 486
BssMI GATC 2 cut(s) 370, 421
BstC8I GCNNGC 5 cut(s) 38, 58, 269, 642, 664
BstDEI CTNAG 3 cut(s) 174, 324, 378
BstEII GGTNACC 1 cut(s) 203
BstF5I GGATG 1 cut(s) 622
BstFNI CGCG 1 cut(s) 668
BstHHI GCGC 1 cut(s) 668
BstKTI GATC 2 cut(s) 373, 424
BstMAI GTCTC 1 cut(s) 164
BstMBI GATC 2 cut(s) 370, 421
BstMWI GCNNNNNNNGC 2 cut(s) 650, 659
BstPI GGTNACC 1 cut(s) 203
BstSCI CCNGG 2 cut(s) 361, 486
BstSFI CTRYAG 1 cut(s) 654
BstUI CGCG 1 cut(s) 668
BstV1I GCAGC 3 cut(s) 265, 529, 640
BstX2I RGATCY 1 cut(s) 421
BstXI CCANNNNNNTGG 1 cut(s) 596
BstYI RGATCY 1 cut(s) 421
BsuRI GGCC 1 cut(s) 587
BtsCI GGATG 1 cut(s) 622
BtsIMutI CAGTG 1 cut(s) 505
Cac8I GCNNGC 5 cut(s) 38, 58, 269, 642, 664
CciI TCATGA 1 cut(s) 522
CfoI GCGC 1 cut(s) 668
Cfr13I GGNCC 2 cut(s) 586, 599
CseI GACGC 1 cut(s) 657
Csp6I GTAC 3 cut(s) 84, 417, 635
CviAII CATG 2 cut(s) 209, 523
CviQI GTAC 3 cut(s) 84, 417, 635
DdeI CTNAG 3 cut(s) 174, 324, 378
DpnI GATC 2 cut(s) 372, 423
DpnII GATC 2 cut(s) 370, 421
Eco32I GATATC 1 cut(s) 406
Eco47I GGWCC 1 cut(s) 599
Eco91I GGTNACC 1 cut(s) 203
EcoO65I GGTNACC 1 cut(s) 203
EcoRV GATATC 1 cut(s) 406
FaeI CATG 2 cut(s) 212, 526
FaiI YATR 9 cut(s) 6, 157, 210, 447, 477, 524, 584, 630, 678
FalI AAGNNNNNCTT 4 cut(s) 227, 259, 624, 656
FaqI GGGAC 1 cut(s) 77
FatI CATG 2 cut(s) 208, 522
Fnu4HI GCNGC 4 cut(s) 129, 279, 518, 654
FokI GGATG 1 cut(s) 609
Fsp4HI GCNGC 4 cut(s) 129, 279, 518, 654
FspBI CTAG 1 cut(s) 614
GlaI GCGC 1 cut(s) 667
GluI GCNGC 4 cut(s) 129, 279, 518, 654
GsaI CCCAGC 1 cut(s) 64
HaeIII GGCC 1 cut(s) 587
HapII CCGG 2 cut(s) 362, 488
HgaI GACGC 1 cut(s) 657
HhaI GCGC 1 cut(s) 668
Hin1II CATG 2 cut(s) 212, 526
Hin6I GCGC 1 cut(s) 666
HinP1I GCGC 1 cut(s) 666
HindIII AAGCTT 2 cut(s) 38, 236
HinfI GANTC 2 cut(s) 147, 228
HpaII CCGG 2 cut(s) 362, 488
HphI GGTGA 1 cut(s) 398
Hpy166II GTNNAC 1 cut(s) 455
Hpy188I TCNGA 2 cut(s) 327, 410
Hpy188III TCNNGA 4 cut(s) 190, 218, 285, 523
Hpy8I GTNNAC 1 cut(s) 455
HpyAV CCTTC 4 cut(s) 322, 384, 585, 628
HpyCH4V TGCA 2 cut(s) 56, 656
HpyF10VI GCNNNNNNNGC 2 cut(s) 650, 659
HpyF3I CTNAG 3 cut(s) 174, 324, 378
Hsp92II CATG 2 cut(s) 212, 526
HspAI GCGC 1 cut(s) 666
Kzo9I GATC 2 cut(s) 370, 421
Lsp1109I GCAGC 3 cut(s) 265, 529, 640
LweI GCATC 1 cut(s) 649
MaeI CTAG 1 cut(s) 614
MaeIII GTNAC 2 cut(s) 203, 386
MalI GATC 2 cut(s) 372, 423
MboI GATC 2 cut(s) 370, 421
MboII GAAGA 1 cut(s) 310
MflI RGATCY 1 cut(s) 421
MluCI AATT 4 cut(s) 71, 160, 551, 594
MnlI CCTC 5 cut(s) 172, 197, 292, 440, 535
MseI TTAA 1 cut(s) 42
MslI CAYNNNNRTG 1 cut(s) 627
MspA1I CMGCKG 1 cut(s) 29
MspI CCGG 2 cut(s) 362, 488
MspR9I CCNGG 2 cut(s) 363, 488
MvnI CGCG 1 cut(s) 668
MwoI GCNNNNNNNGC 2 cut(s) 650, 659
NciI CCSGG 2 cut(s) 363, 488
NdeII GATC 2 cut(s) 370, 421
NlaIII CATG 2 cut(s) 212, 526
NlaIV GGNNCC 2 cut(s) 105, 559
NmuCI GTSAC 1 cut(s) 386
PagI TCATGA 1 cut(s) 522
PfeI GAWTC 2 cut(s) 147, 228
PkrI GCNGC 4 cut(s) 130, 280, 519, 655
PspEI GGTNACC 1 cut(s) 203
PspFI CCCAGC 1 cut(s) 60
PspN4I GGNNCC 2 cut(s) 105, 559
PspPI GGNCC 2 cut(s) 586, 599
PstI CTGCAG 1 cut(s) 658
PsuI RGATCY 1 cut(s) 421
PvuII CAGCTG 1 cut(s) 29
RsaI GTAC 3 cut(s) 85, 418, 636
RsaNI GTAC 3 cut(s) 84, 417, 635
RseI CAYNNNNRTG 1 cut(s) 627
SaqAI TTAA 1 cut(s) 42
SatI GCNGC 4 cut(s) 129, 279, 518, 654
Sau3AI GATC 2 cut(s) 370, 421
Sau96I GGNCC 2 cut(s) 586, 599
ScaI AGTACT 1 cut(s) 636
ScrFI CCNGG 2 cut(s) 363, 488
SfaNI GCATC 1 cut(s) 649
SfcI CTRYAG 1 cut(s) 654
SinI GGWCC 1 cut(s) 599
SmiMI CAYNNNNRTG 1 cut(s) 627
SmlI CTYRAG 1 cut(s) 283
SmoI CTYRAG 1 cut(s) 283
Sse9I AATT 4 cut(s) 71, 160, 551, 594
SsiI CCGC 1 cut(s) 128
SspMI CTAG 1 cut(s) 614
StyD4I CCNGG 2 cut(s) 361, 486
TaqI TCGA 1 cut(s) 438
TasI AATT 4 cut(s) 71, 160, 551, 594
TatI WGTACW 2 cut(s) 416, 634
TauI GCSGC 1 cut(s) 131
TfiI GAWTC 2 cut(s) 147, 228
Tru1I TTAA 1 cut(s) 42
Tru9I TTAA 1 cut(s) 42
TscAI CASTG 1 cut(s) 505
TseFI GTSAC 1 cut(s) 386
TseI GCWGC 3 cut(s) 278, 517, 653
Tsp45I GTSAC 1 cut(s) 386
TspDTI ATGAA 5 cut(s) 156, 267, 464, 539, 645
TspRI CASTG 1 cut(s) 505
VpaK11BI GGWCC 1 cut(s) 599
XapI RAATTY 1 cut(s) 71
XspI CTAG 1 cut(s) 614
ZrmI AGTACT 1 cut(s) 636
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.