Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0002483

Physical Location & Seq

Genomic Coordinates Forward (+)

12220207 .. 12220797

Gene Structure 591 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000022786

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGCGGCTGCACACTCCAAAGGTAGATAGAGTTGTAGGAAACGCACAGAAGATAGAAAGAGCTGTTGGGAACACTCAGACGGTAGAAAGAGTTGTGGGGATTGGCTTTCAACCGGGGCTTGATCCTTCTAAAATAGTAAGTGCATGTCACGCTGGTGACATTCAGTTCCTTGATATCAGAAGTAGTAAAGATCCCTACCTCACAATCGAAGCTCATAGGGGTTCACTCACAGCTTTAGCTGTTCATAGACACGCTCCGCTCATTGCCAGTGGCTCAGCCAAGCAGCTCATGAAAGTCTTTAGTTTGGAGGGCGAACAATTAGGCACCATTAGATACTACCCTTCCTTTATGGCCCAAAAAATTGGTTCTGTTAGTTGCCTAGCCTTCCATCCGTATGAAGTACTGCTTGCTACTGGTGCTGCAGCCTGCAGATGCTTGCGCATCCATCTATGCCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000151 GO:0001101 GO:0001558 GO:0001932 GO:0001934 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008361 GO:0009267 GO:0009605 GO:0009719 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009893 GO:0009894 GO:0009987 GO:0009991 GO:0010033 GO:0010073 GO:0010074 GO:0010154 GO:0010243 GO:0010492 GO:0010506 GO:0010562 GO:0010604 GO:0016043 GO:0019220 GO:0019222 GO:0019827 GO:0022414 GO:0023052 GO:0030307 GO:0030674 GO:0031323 GO:0031325 GO:0031329 GO:0031399 GO:0031401 GO:0031461 GO:0031667 GO:0031668 GO:0031669 GO:0031929 GO:0031931 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0032535 GO:0032991 GO:0033554 GO:0033674 GO:0035556 GO:0038201 GO:0040008 GO:0042221 GO:0042325 GO:0042327 GO:0042594 GO:0043085 GO:0043200 GO:0043549 GO:0044093 GO:0044424 GO:0044464 GO:0045859 GO:0045860 GO:0045927 GO:0045937 GO:0048316 GO:0048507 GO:0048518 GO:0048522 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0051716 GO:0060090 GO:0060255 GO:0061458 GO:0065007 GO:0065008 GO:0065009 GO:0070887 GO:0071229 GO:0071230 GO:0071310 GO:0071417 GO:0071495 GO:0071496 GO:0071840 GO:0071900 GO:0071902 GO:0080008 GO:0080090 GO:0090066 GO:0098727 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04136 ko04138 ko04140 ko04150 ko04151 ko04152 ko04211 ko04213 ko04714 ko04910 ko05206 map04136 map04138 map04140 map04150 map04151 map04152 map04211 map04213 map04714 map04910 map05206

Pfam Domains

Protein Families

HEAT Raptor_N WD40

Protein Analysis

153

Amino Acids

16.55

Weight (kDa)

9.43

Isoelectric Point (pI)

30.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_THOC3	PF25174	29 - 103	7.1e-06	THOC3 beta-propeller domain
WD40_CDC20-Fz	PF24807	42 - 148	2.6e-08	CDC20/Fizzy WD40 domain
WD40_Prp19	PF24814	42 - 141	6.7e-06	Prp19 WD40 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002483)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G08850 AT5G01770 AT5G01770 AT5G01770 AT5G01770 AT5G01770
fragaria_vesca	FvH4_6g10400 FvH4_6g10400 FvH4_6g10400 FvH4_6g10400 FvH4_6g10400
malus_domestica	MD04G1169600.v1.1 MD12G1183600.v1.1 MD12G1183800.v1.1
prunus_persica	Prupe.6G288100_v2.0.a1 Prupe.6G288100_v2.0.a1
pyrus_communis	pycom04g15040 pycom04g15060 pycom12g17220
rosa_chinensis	RchiOBHm_Chr3g0461291 RchiOBHm_Chr3g0492271 RchiOBHm_Chr3g0492281
rosa_laevigata	RLG00000022786 RLG00000024943
rosa_multiflora	Rmu_ssc0000326.1_g000006
rosa_roxburghii	Rroxscaffold_6G00392440 Rroxscaffold_6G00418430 Rroxscaffold_6G00418720
rosa_rugosa	Rorug03G0049400 Rorug03G0049400
rosa_samantha	Rh3AG106900 Rh3AG303000 Rh3BG111000 Rh3BG338300 Rh3BG338500 Rh3CG112900 Rh3CG336100 Rh3DG113000 Rh3DG338100
rosa_wichuraiana	Rw3G009150 Rw3G026720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	440
AccB1I	GGYRCC	1 cut(s)	323
AccBSI	CCGCTC	1 cut(s)	259
AciI	CCGC	2 cut(s)	4, 257
AclWI	GGATC	2 cut(s)	116, 185
AfaI	GTAC	1 cut(s)	402
AgsI	TTSAA	1 cut(s)	110
AjuI	GAANNNNNNNTTGG	2 cut(s)	48, 80
AleI	CACNNNNGTG	1 cut(s)	153
AluBI	AGCT	5 cut(s)	62, 212, 233, 239, 286
AluI	AGCT	5 cut(s)	62, 212, 233, 239, 286
AlwI	GGATC	2 cut(s)	116, 185
AoxI	GGCC	1 cut(s)	351
ApeKI	GCWGC	4 cut(s)	7, 283, 419, 422
AspLEI	GCGC	1 cut(s)	441
AspS9I	GGNCC	1 cut(s)	352
AsuC2I	CCSGG	1 cut(s)	114
AsuHPI	GGTGA	1 cut(s)	167
BanI	GGYRCC	1 cut(s)	323
BbvI	GCAGC	3 cut(s)	295, 406, 434
BccI	CCATC	2 cut(s)	396, 453
BcnI	CCSGG	1 cut(s)	114
BfaI	CTAG	1 cut(s)	380
BfmI	CTRYAG	2 cut(s)	420, 427
BisI	GCNGC	5 cut(s)	5, 8, 284, 420, 423
BlpI	GCTNAGC	1 cut(s)	274
BlsI	GCNGC	5 cut(s)	6, 9, 285, 421, 424
BmcAI	AGTACT	1 cut(s)	402
Bme1390I	CCNGG	1 cut(s)	114
BmgT120I	GGNCC	1 cut(s)	352
BmiI	GGNNCC	1 cut(s)	325
BmrFI	CCNGG	1 cut(s)	114
BmsI	GCATC	2 cut(s)	422, 450
Bpu1102I	GCTNAGC	1 cut(s)	274
BpuMI	CCSGG	1 cut(s)	114
BsaJI	CCNNGG	1 cut(s)	113
Bse1I	ACTGG	2 cut(s)	267, 418
Bse3DI	GCAATG	1 cut(s)	261
BseDI	CCNNGG	1 cut(s)	113
BseGI	GGATG	2 cut(s)	388, 441
BseMI	GCAATG	1 cut(s)	261
BseMII	CTCAG	2 cut(s)	89, 288
BseNI	ACTGG	2 cut(s)	267, 418
BseXI	GCAGC	3 cut(s)	295, 406, 434
BshFI	GGCC	1 cut(s)	353
BshNI	GGYRCC	1 cut(s)	323
BsiSI	CCGG	1 cut(s)	113
BsnI	GGCC	1 cut(s)	353
Bsp143I	GATC	2 cut(s)	121, 190
Bsp1720I	GCTNAGC	1 cut(s)	274
BspACI	CCGC	2 cut(s)	4, 257
BspANI	GGCC	1 cut(s)	353
BspCNI	CTCAG	2 cut(s)	88, 287
BspHI	TCATGA	1 cut(s)	288
BspLI	GGNNCC	1 cut(s)	325
BspMAI	CTGCAG	2 cut(s)	424, 431
BspPI	GGATC	2 cut(s)	116, 185
BspT107I	GGYRCC	1 cut(s)	323
BsrBI	CCGCTC	1 cut(s)	259
BsrDI	GCAATG	1 cut(s)	261
BsrI	ACTGG	2 cut(s)	267, 418
BssECI	CCNNGG	1 cut(s)	113
BssMI	GATC	2 cut(s)	121, 190
Bst4CI	ACNGT	1 cut(s)	82
BstC8I	GCNNGC	3 cut(s)	408, 427, 437
BstDEI	CTNAG	2 cut(s)	75, 274
BstF5I	GGATG	2 cut(s)	388, 441
BstHHI	GCGC	1 cut(s)	441
BstKTI	GATC	2 cut(s)	124, 193
BstMBI	GATC	2 cut(s)	121, 190
BstMWI	GCNNNNNNNGC	2 cut(s)	149, 416
BstNSI	RCATGY	1 cut(s)	147
BstSCI	CCNGG	1 cut(s)	112
BstSFI	CTRYAG	2 cut(s)	420, 427
BstV1I	GCAGC	3 cut(s)	295, 406, 434
BstX2I	RGATCY	1 cut(s)	190
BstXI	CCANNNNNNTGG	1 cut(s)	362
BstYI	RGATCY	1 cut(s)	190
BsuRI	GGCC	1 cut(s)	353
BtsCI	GGATG	2 cut(s)	388, 441
BtsIMutI	CAGTG	1 cut(s)	274
Cac8I	GCNNGC	3 cut(s)	408, 427, 437
CciI	TCATGA	1 cut(s)	288
CfoI	GCGC	1 cut(s)	441
Cfr13I	GGNCC	1 cut(s)	352
Csp6I	GTAC	1 cut(s)	401
CviAII	CATG	2 cut(s)	144, 289
CviQI	GTAC	1 cut(s)	401
DdeI	CTNAG	2 cut(s)	75, 274
DpnI	GATC	2 cut(s)	123, 192
DpnII	GATC	2 cut(s)	121, 190
Eco32I	GATATC	1 cut(s)	175
EcoRV	GATATC	1 cut(s)	175
FaeI	CATG	2 cut(s)	147, 292
FaiI	YATR	7 cut(s)	145, 216, 246, 290, 350, 396, 451
FalI	AAGNNNNNCTT	2 cut(s)	390, 422
FatI	CATG	2 cut(s)	143, 288
Fnu4HI	GCNGC	5 cut(s)	5, 8, 284, 420, 423
FokI	GGATG	2 cut(s)	375, 428
Fsp4HI	GCNGC	5 cut(s)	5, 8, 284, 420, 423
FspBI	CTAG	1 cut(s)	380
FspI	TGCGCA	1 cut(s)	440
GlaI	GCGC	1 cut(s)	440
GluI	GCNGC	5 cut(s)	5, 8, 284, 420, 423
HaeIII	GGCC	1 cut(s)	353
HapII	CCGG	1 cut(s)	113
HhaI	GCGC	1 cut(s)	441
Hin1II	CATG	2 cut(s)	147, 292
Hin6I	GCGC	1 cut(s)	439
HinP1I	GCGC	1 cut(s)	439
HpaII	CCGG	1 cut(s)	113
HphI	GGTGA	1 cut(s)	167
Hpy166II	GTNNAC	1 cut(s)	224
Hpy188I	TCNGA	2 cut(s)	78, 179
Hpy188III	TCNNGA	1 cut(s)	289
Hpy8I	GTNNAC	1 cut(s)	224
HpyAV	CCTTC	3 cut(s)	135, 351, 394
HpyCH4III	ACNGT	1 cut(s)	82
HpyCH4V	TGCA	4 cut(s)	10, 143, 422, 429
HpyF10VI	GCNNNNNNNGC	2 cut(s)	149, 416
HpyF3I	CTNAG	2 cut(s)	75, 274
Hsp92II	CATG	2 cut(s)	147, 292
HspAI	GCGC	1 cut(s)	439
Kzo9I	GATC	2 cut(s)	121, 190
LmnI	GCTCC	1 cut(s)	259
LpnPI	CCDG	5 cut(s)	126, 138, 280, 399, 439
Lsp1109I	GCAGC	3 cut(s)	295, 406, 434
LweI	GCATC	2 cut(s)	422, 450
MaeI	CTAG	1 cut(s)	380
MaeIII	GTNAC	2 cut(s)	146, 155
MalI	GATC	2 cut(s)	123, 192
MbiI	CCGCTC	1 cut(s)	259
MboI	GATC	2 cut(s)	121, 190
MboII	GAAGA	1 cut(s)	61
MflI	RGATCY	1 cut(s)	190
MluCI	AATT	2 cut(s)	317, 360
MnlI	CCTC	2 cut(s)	209, 301
MslI	CAYNNNNRTG	2 cut(s)	153, 393
MspI	CCGG	1 cut(s)	113
MspR9I	CCNGG	1 cut(s)	114
MwoI	GCNNNNNNNGC	2 cut(s)	149, 416
NciI	CCSGG	1 cut(s)	114
NdeII	GATC	2 cut(s)	121, 190
NlaIII	CATG	2 cut(s)	147, 292
NlaIV	GGNNCC	1 cut(s)	325
NmuCI	GTSAC	2 cut(s)	146, 155
NsbI	TGCGCA	1 cut(s)	440
NspI	RCATGY	1 cut(s)	147
OliI	CACNNNNGTG	1 cut(s)	153
PagI	TCATGA	1 cut(s)	288
PkrI	GCNGC	5 cut(s)	6, 9, 285, 421, 424
PspN4I	GGNNCC	1 cut(s)	325
PspPI	GGNCC	1 cut(s)	352
PstI	CTGCAG	2 cut(s)	424, 431
PsuI	RGATCY	1 cut(s)	190
RsaI	GTAC	1 cut(s)	402
RsaNI	GTAC	1 cut(s)	401
RseI	CAYNNNNRTG	2 cut(s)	153, 393
SatI	GCNGC	5 cut(s)	5, 8, 284, 420, 423
Sau3AI	GATC	2 cut(s)	121, 190
Sau96I	GGNCC	1 cut(s)	352
ScaI	AGTACT	1 cut(s)	402
ScrFI	CCNGG	1 cut(s)	114
SetI	ASST	7 cut(s)	24, 64, 201, 214, 235, 241, 288
SfaNI	GCATC	2 cut(s)	422, 450
SfcI	CTRYAG	2 cut(s)	420, 427
SmiMI	CAYNNNNRTG	2 cut(s)	153, 393
Sse9I	AATT	2 cut(s)	317, 360
SsiI	CCGC	2 cut(s)	4, 257
SspMI	CTAG	1 cut(s)	380
StyD4I	CCNGG	1 cut(s)	112
TaaI	ACNGT	1 cut(s)	82
TaqI	TCGA	1 cut(s)	207
TasI	AATT	2 cut(s)	317, 360
TatI	WGTACW	1 cut(s)	400
TauI	GCSGC	1 cut(s)	7
TscAI	CASTG	1 cut(s)	274
TseFI	GTSAC	2 cut(s)	146, 155
TseI	GCWGC	4 cut(s)	7, 283, 419, 422
Tsp45I	GTSAC	2 cut(s)	146, 155
TspDTI	ATGAA	3 cut(s)	233, 305, 411
TspGWI	ACGGA	1 cut(s)	381
TspRI	CASTG	1 cut(s)	274
XceI	RCATGY	1 cut(s)	147
XspI	CTAG	1 cut(s)	380
ZrmI	AGTACT	1 cut(s)	402

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.