Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0002483

Physical Location & Seq

Genomic Coordinates Reverse (-)

36217232 .. 36229121

Gene Structure 11890 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG338300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGTGCATAGGTAGCAATGTAACATCATGTAGACATGTTTCTGAAATATCTGCATCTCAAGTTCATGGAATTCAACTCACAGCTGGTTTTATTGACGGTTCTGTTAGGCTCTATGATGTGCGAACTCCTGACATGGATCCTTACTCTGTGGGTGTTGATTCAGATTCCTTGAAAGCTTCTCTAGCTTCCCAAGGTATGCCAATGCCTATTGAGAAACAAAAGGACTCAAAAGATGAACTTCTGCTCATGGCATATACTTCAGGTACTGCTATTATACCTGAAACTCATGGCAAAACTAGTTCAAGGCCGTACAACTGCAGATTTATGCTACGAAATCTGTTCTCACTGTTGGTCAAAGCTCCTGAATTTGCTTCTAGTGCAGTTTGGGTTGATTCGCCAGTTCACAGTTTGCAGAGGATTGGAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000151 GO:0001101 GO:0001558 GO:0001932 GO:0001934 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008361 GO:0009267 GO:0009605 GO:0009719 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009893 GO:0009894 GO:0009987 GO:0009991 GO:0010033 GO:0010073 GO:0010074 GO:0010154 GO:0010243 GO:0010492 GO:0010506 GO:0010562 GO:0010604 GO:0016043 GO:0019220 GO:0019222 GO:0019827 GO:0022414 GO:0023052 GO:0030307 GO:0030674 GO:0031323 GO:0031325 GO:0031329 GO:0031399 GO:0031401 GO:0031461 GO:0031667 GO:0031668 GO:0031669 GO:0031929 GO:0031931 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0032535 GO:0032991 GO:0033554 GO:0033674 GO:0035556 GO:0038201 GO:0040008 GO:0042221 GO:0042325 GO:0042327 GO:0042594 GO:0043085 GO:0043200 GO:0043549 GO:0044093 GO:0044424 GO:0044464 GO:0045859 GO:0045860 GO:0045927 GO:0045937 GO:0048316 GO:0048507 GO:0048518 GO:0048522 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0051716 GO:0060090 GO:0060255 GO:0061458 GO:0065007 GO:0065008 GO:0065009 GO:0070887 GO:0071229 GO:0071230 GO:0071310 GO:0071417 GO:0071495 GO:0071496 GO:0071840 GO:0071900 GO:0071902 GO:0080008 GO:0080090 GO:0090066 GO:0098727 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04136 ko04138 ko04140 ko04150 ko04151 ko04152 ko04211 ko04213 ko04714 ko04910 ko05206 map04136 map04138 map04140 map04150 map04151 map04152 map04211 map04213 map04714 map04910 map05206

Pfam Domains

Protein Families

HEAT Raptor_N WD40

Protein Analysis

142

Amino Acids

15.48

Weight (kDa)

6.89

Isoelectric Point (pI)

44.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002483)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G08850 AT5G01770 AT5G01770 AT5G01770 AT5G01770 AT5G01770
fragaria_vesca	FvH4_6g10400 FvH4_6g10400 FvH4_6g10400 FvH4_6g10400 FvH4_6g10400
malus_domestica	MD04G1169600.v1.1 MD12G1183600.v1.1 MD12G1183800.v1.1
prunus_persica	Prupe.6G288100_v2.0.a1 Prupe.6G288100_v2.0.a1
pyrus_communis	pycom04g15040 pycom04g15060 pycom12g17220
rosa_chinensis	RchiOBHm_Chr3g0461291 RchiOBHm_Chr3g0492271 RchiOBHm_Chr3g0492281
rosa_laevigata	RLG00000022786 RLG00000024943
rosa_multiflora	Rmu_ssc0000326.1_g000006
rosa_roxburghii	Rroxscaffold_6G00392440 Rroxscaffold_6G00418430 Rroxscaffold_6G00418720
rosa_rugosa	Rorug03G0049400 Rorug03G0049400
rosa_samantha	Rh3AG106900 Rh3AG303000 Rh3BG111000 Rh3BG338300 Rh3BG338500 Rh3CG112900 Rh3CG336100 Rh3DG113000 Rh3DG338100
rosa_wichuraiana	Rw3G009150 Rw3G026720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	31
AclWI	GGATC	2 cut(s)	131, 144
AcsI	RAATTY	2 cut(s)	69, 365
AcuI	CTGAAG	1 cut(s)	243
AfaI	GTAC	2 cut(s)	265, 311
AflIII	ACRYGT	1 cut(s)	34
AgsI	TTSAA	3 cut(s)	74, 172, 303
AhlI	ACTAGT	1 cut(s)	296
AluBI	AGCT	4 cut(s)	83, 176, 185, 359
AluI	AGCT	4 cut(s)	83, 176, 185, 359
AlwI	GGATC	2 cut(s)	131, 144
AlwNI	CAGNNNCTG	1 cut(s)	266
AoxI	GGCC	1 cut(s)	305
ApoI	RAATTY	2 cut(s)	69, 365
BamHI	GGATCC	1 cut(s)	136
BceAI	ACGGC	1 cut(s)	292
BcuI	ACTAGT	1 cut(s)	296
BfaI	CTAG	3 cut(s)	182, 297, 375
BfmI	CTRYAG	1 cut(s)	316
BmiI	GGNNCC	1 cut(s)	138
BmsI	GCATC	1 cut(s)	62
BpuEI	CTTGAG	1 cut(s)	42
BsaJI	CCNNGG	1 cut(s)	190
Bse1I	ACTGG	1 cut(s)	398
Bse3DI	GCAATG	1 cut(s)	22
BseDI	CCNNGG	1 cut(s)	190
BseMI	GCAATG	1 cut(s)	22
BseNI	ACTGG	1 cut(s)	398
BsgI	GTGCAG	1 cut(s)	399
BshFI	GGCC	1 cut(s)	307
BsnI	GGCC	1 cut(s)	307
Bsp143I	GATC	1 cut(s)	136
BspANI	GGCC	1 cut(s)	307
BspLI	GGNNCC	1 cut(s)	138
BspMAI	CTGCAG	1 cut(s)	320
BspPI	GGATC	2 cut(s)	131, 144
BsrDI	GCAATG	1 cut(s)	22
BsrI	ACTGG	1 cut(s)	398
BssECI	CCNNGG	1 cut(s)	190
BssMI	GATC	1 cut(s)	136
BssT1I	CCWWGG	1 cut(s)	190
Bst4CI	ACNGT	3 cut(s)	98, 348, 407
BstKTI	GATC	1 cut(s)	139
BstMBI	GATC	1 cut(s)	136
BstMWI	GCNNNNNNNGC	3 cut(s)	12, 182, 377
BstNSI	RCATGY	1 cut(s)	38
BstSFI	CTRYAG	1 cut(s)	316
BstX2I	RGATCY	1 cut(s)	136
BstYI	RGATCY	1 cut(s)	136
BsuRI	GGCC	1 cut(s)	307
BtsIMutI	CAGTG	1 cut(s)	344
CaiI	CAGNNNCTG	1 cut(s)	266
Csp6I	GTAC	2 cut(s)	264, 310
CviAII	CATG	6 cut(s)	27, 35, 65, 133, 247, 287
CviJI	RGCY	6 cut(s)	83, 109, 176, 185, 307, 359
CviKI_1	RGCY	6 cut(s)	83, 109, 176, 185, 307, 359
CviQI	GTAC	2 cut(s)	264, 310
DpnI	GATC	1 cut(s)	138
DpnII	GATC	1 cut(s)	136
Eco130I	CCWWGG	1 cut(s)	190
Eco57I	CTGAAG	1 cut(s)	243
EcoRI	GAATTC	1 cut(s)	69
EcoT14I	CCWWGG	1 cut(s)	190
ErhI	CCWWGG	1 cut(s)	190
FaeI	CATG	6 cut(s)	30, 38, 68, 136, 250, 290
FalI	AAGNNNNNCTT	2 cut(s)	222, 254
FatI	CATG	6 cut(s)	26, 34, 64, 132, 246, 286
FblI	GTMKAC	1 cut(s)	31
FspBI	CTAG	3 cut(s)	182, 297, 375
HaeIII	GGCC	1 cut(s)	307
Hin1II	CATG	6 cut(s)	30, 38, 68, 136, 250, 290
HindIII	AAGCTT	1 cut(s)	174
HinfI	GANTC	4 cut(s)	158, 164, 224, 392
Hpy166II	GTNNAC	2 cut(s)	32, 403
Hpy188I	TCNGA	2 cut(s)	43, 163
Hpy188III	TCNNGA	2 cut(s)	128, 362
Hpy8I	GTNNAC	2 cut(s)	32, 403
HpyCH4III	ACNGT	3 cut(s)	98, 348, 407
HpyCH4V	TGCA	5 cut(s)	6, 53, 318, 380, 412
HpyF10VI	GCNNNNNNNGC	3 cut(s)	12, 182, 377
Hsp92II	CATG	6 cut(s)	30, 38, 68, 136, 250, 290
Kzo9I	GATC	1 cut(s)	136
LmnI	GCTCC	1 cut(s)	364
LpnPI	CCDG	6 cut(s)	69, 141, 246, 291, 375, 411
LweI	GCATC	1 cut(s)	62
MaeI	CTAG	3 cut(s)	182, 297, 375
MaeIII	GTNAC	1 cut(s)	19
MalI	GATC	1 cut(s)	138
MboI	GATC	1 cut(s)	136
MflI	RGATCY	1 cut(s)	136
MluCI	AATT	2 cut(s)	69, 365
MlyI	GAGTC	1 cut(s)	218
MnlI	CCTC	1 cut(s)	408
MspA1I	CMGCKG	1 cut(s)	83
MwoI	GCNNNNNNNGC	3 cut(s)	12, 182, 377
NdeII	GATC	1 cut(s)	136
NlaIII	CATG	6 cut(s)	30, 38, 68, 136, 250, 290
NlaIV	GGNNCC	1 cut(s)	138
NspI	RCATGY	1 cut(s)	38
PciI	ACATGT	1 cut(s)	34
PfeI	GAWTC	3 cut(s)	158, 164, 392
PleI	GAGTC	1 cut(s)	218
PpsI	GAGTC	1 cut(s)	218
PscI	ACATGT	1 cut(s)	34
PspN4I	GGNNCC	1 cut(s)	138
PstI	CTGCAG	1 cut(s)	320
PstNI	CAGNNNCTG	1 cut(s)	266
PsuI	RGATCY	1 cut(s)	136
PvuII	CAGCTG	1 cut(s)	83
RsaI	GTAC	2 cut(s)	265, 311
RsaNI	GTAC	2 cut(s)	264, 310
Sau3AI	GATC	1 cut(s)	136
SchI	GAGTC	1 cut(s)	218
SetI	ASST	8 cut(s)	13, 85, 178, 187, 196, 265, 280, 361
SfaNI	GCATC	1 cut(s)	62
SfcI	CTRYAG	1 cut(s)	316
SmlI	CTYRAG	1 cut(s)	57
SmoI	CTYRAG	1 cut(s)	57
SpeI	ACTAGT	1 cut(s)	296
Sse9I	AATT	2 cut(s)	69, 365
SspMI	CTAG	3 cut(s)	182, 297, 375
StyI	CCWWGG	1 cut(s)	190
TaaI	ACNGT	3 cut(s)	98, 348, 407
TasI	AATT	2 cut(s)	69, 365
TfiI	GAWTC	3 cut(s)	158, 164, 392
TscAI	CASTG	1 cut(s)	351
TspDTI	ATGAA	2 cut(s)	53, 249
TspRI	CASTG	1 cut(s)	351
XapI	RAATTY	2 cut(s)	69, 365
XceI	RCATGY	1 cut(s)	38
XmiI	GTMKAC	1 cut(s)	31
XspI	CTAG	3 cut(s)	182, 297, 375

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.