Rh3DG113000

Regulatory-associated protein of TOR

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0002483
Physical Location & Seq
Reverse (-)
9298099 .. 9309941
11843 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG113000.1

Sequence Viewer

Length: 3804 bp
ATGAAGACAGGATGTGTAGCTCTAGTATTATGTTTAAACATCAGCGTTGATCCGCCCGATGTAATTAAGATATCTCCCTGTGCCAGAATGGAGTGCTGGATAGATCCATTTTCTATGGCTCCAACAAAAGCTCTTGAAACAATTGGTAAAACCTTGAGTACACAGTATGAAAGATGGCAACCAAGGGCTAAATACAGGGTTCAGCTTGATCCTACTATAGATGAAGTCAAGAAGCTTTGTAGTACATGCCGCAAATATGCCAAGTCTGAGAGAGTTCTTTTCCATTATAATGGTCATGGTGTACCCAAGCCAACTGCTAATGGTGAAATTTGGCTATTTAATAAGAGTTATACACAGTATATTCCCTTGCCAATTAGCGACCTTGATTCCTGGTTGAAGACACCTTCAATATACGTCTTTGACTGTTCTGCCGCTGGCATGATTGTTAATTCATTCGTTGAGCTCCATGATTGGGCTGGCTCTAACTCTGGATCTCCAAGAGATTGTATCCTGCTTGCTGCTTGTGAACCACACGAGACTCTTCCGCAGAGTGCGGAATTTCCTGCTGATGTCTTTACTTCTTGCCTCACAACTCCCATCAAGATGGCTTTAAGATGGTTCTGCACACGTTCCTTACTTCATGAGTCTCTTGATTATTCACTAATAGATAAAATCCCTGGCCGTCAAAATGACCGGAAAACCCTTTTGGGTGAATTGAACTGGATTTTTACTGCTATCACTGACACAATTGCATGGAATGTTCTTCCTCATGATCTTTTCCAGAGACTTTTCAGACAAGATTTGTTAGTTGCCAGCCTGTTTCGAAACTTTTTACTTGCCGAGCGGATTATGCGATCTGCAAATTGCTCTCCAATCTCTCATCCACAGTTGCCTTCTACCCATCAGCACCACATGTGGGATGCATGGGATATGGCTGCTGAGATATGCCTTTCTCAGCTTCCATTGTTGGTTGAGGATTCTAATGCTGAGTTTCAGCCAAGTCCATTTTTCACTGAGCAGTTGACTGCTTTTGAGGTATGGCTTGACCACGGGTCTGAACACAAGAAACCACCAGAGCAGTTGCCTATTGTTCTTCAGGTGTTACTTAGTCAATGCCATCGGTTTCGGGCTCTGGTTCTTCTCGGGAGATTCCTTGATATGGGACCCTGGGCTGTAGATCTGGCATTGTCTGTTGGAATATTTCCATATGTACTGAAGCTGTTGCAAACGATGACACCTGAACTACGACAGATTCTTGTATTCATTTGGACAAAAATTCTTGCACTGGATAAGTCATGCCAGGTGGATCTAGTGAAGGATGGGGGTCATATATATTTCATCAGGTTTCTTGATAGCATGGAGGCATATCCAGAGCAGCGTGCAATGGCTGCTTTTGTTTTGGCTGTAATAGTTGATGGCCATAGACGTGGCCAGGAAGCTTGTATTGAAGCAGGTTTAATCCATGTTTGTTTGAAGCACCTTCAGGGTCCAACACCAAATGACACACAAACTGAACCCCTATTTCTTCAGTGGCTTTGCCTCTGTCTGGGGAAACTATGGGAGGATTTCACAGAGGCCCAAATATTTGGTTTGCAGGCAGATGCCCCTGCAGTATGTGCTCCTCTGCTTGCTGAGCCCCAACCGGAGGTGAGGGCTTCTGCTGTTTTCGCATTGGGCACCCTGCTTGATGTGGGTTCAGGATCATGTAGAGATGGCAATGGTGGAGATGATGAGTATGATGATGAGGAAAAGATAAGGGCTGAAATTAGTATCATTAAAAGCCTATTAAGTGTTGTTTCAGATGGAAGCCCTCTTGTCAGAGCTGAAGTTGCTGTTGCTCTAGGACGCTTTGCCTTTGGACACAACAAGCACCTGAAGTCGATTGCTGCTGCCTATTGGAAACCACAGTCTAATTCTCTTGTGACTTCCTTGCCTGCTTTGGTTAGTATTAAAGGTCCTGGTAGTGCTTCATCTCATATTGGTCCACTTTCGAGAGTTGGCAATGACAGCTCATTGGTTCGGGATGGAAGAGTTTCTACCAGCAGTCCCCTAGCAAGTTCTGGAATTATGCATGGATCTCCATTATCTGATGATTTATCTCATCATTCTGATTCTGGAATATTAGATGATGGTGGGAGCAATGGTATTGTTAACCATTTGACCCCTAGACCCCTGGACAGTCAAATGTATTCTCAGTGTGTATTGGCTATGTGTAACTTAGCCAAAGATCCATCTCCACGAATTGCAAAAATTGGTCGCCGAGTATTAGCCATTATAGGGATTGAGCAAGTGGTGGCGAAACCTGTAAAGTCCACGGGTAACAGTTTTCGACCTAGTGAATCCATTGCAGCGTCTCCAAGTCAGAGTCTTGCTGCTGGATTGGCTCGATCGTCTTCATGGTTCGATATGAATGGAGGTCATTTACCTTTCCGAACTCCACCTGTTAGCCCTCCAAGGGCAAATTACTTGGCTGGAATGCGAAGAGTTTGCTCTCTAGAATTTAGGCCTCATCTAATGAGTCCAGATTCAGGTTTAGCTGATCCCCTTTTAGGTTCTGGAGGAACTTTTGGTGCCTCAGAACGAAGTTTTCTTCCTCAATCAACAATCTACAATTGGAGTTGCGGTCACTTTTCCAAGCCACTTCTTATAGGGGCAGATGACAGTAAAGAAATATTAACTAGAAGAGAGGAGAGAGAAAACTTTGCCATGGAGCACATAGCTAAATGCCGGCACTCATCTGTTAGCAAGCTTAATAATCAAATTGCAAGCTGGGACACAAAATTTGAAACTGGTACGAAAAGCATTTTGCTGGAACCATTCTCTCCTATTGTGATTGCGGCTGATGAGAATGAACGAATCAGGGTATGGAATTACCAAGAGGCTAAGGAGGCTATCCTTCTGAACAGCTTTGATAACCATGATTTTCCCGACAAAGGAATCTCCAAGCTTTGCTTTGTGAATGAACTTGATGACAGCCTGCTTCTTGCTGCCTCAAGTGATGGAAACATTCGGATTTGGAAAGATTATACTTTGAAGGGTAAACAGAAACTTGTTACTGCATTTTCTTCAATTCAAGGACATAAACCTGGTGTTCGAAGTCTTAATGCTGTTGTGGATTGGCAGCAGCAATCTGGATATCTGTATGCCTCTGGTGAGCTATCATCCATTATGCTTTGGGATCTCGATAAGGAGCAGCTTGTTAATTCTATTCATTCTCAATCAGACTGTAGCATTTCAGCATTGTCTGCATCTCAAGTTCATGGAAGTCAACTCACAGCTGGTTTTGTTGACGGTTCTGTTAGGCTCTATGATGTGCGAACTCCTGACATGCTTGTCGGTGAAATGCGGCCGCACACTCCAAAGGTTGTAGGAAACGCACAGAAGATAGAAAGAGTTGTTGGGAACACTCAGAAGGTAGAAAGAGTTGTGGGGATTGGCTTTCAACCGGGGCTTGATCCTTCTAAGATTGTAAGTGCATGTCAGGCTGGTGACATTCAGTTCCTTGATATCAGAAATAGTAAAGATCCCTACCTCACAATCGAAGCTCACAGGGGTTCACTCACAGCTTTAGCTGTTCATAGACACGCTCCGCTCATTGCCAGTGGCTCAGCCAAGCAGCTCATAAAAGTCTTTAGTTTGGAGGGCGAACAATTAGGCACCATTAGATACTACCCTTCCTTTATGGCCCAAAAAATTGGCCCTGTTAGCTGCCTAGCCTTCCATCCGTATGAAGTACTGCTTGCTGCTGGTGCTGCAGATGCTTGCGCGTCCATCTATGCCGATGACAACTCTCAAGGTAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000151 GO:0001101 GO:0001558 GO:0001932 GO:0001934 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008361 GO:0009267 GO:0009605 GO:0009719 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009893 GO:0009894 GO:0009987 GO:0009991 GO:0010033 GO:0010073 GO:0010074 GO:0010154 GO:0010243 GO:0010492 GO:0010506 GO:0010562 GO:0010604 GO:0016043 GO:0019220 GO:0019222 GO:0019827 GO:0022414 GO:0023052 GO:0030307 GO:0030674 GO:0031323 GO:0031325 GO:0031329 GO:0031399 GO:0031401 GO:0031461 GO:0031667 GO:0031668 GO:0031669 GO:0031929 GO:0031931 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0032535 GO:0032991 GO:0033554 GO:0033674 GO:0035556 GO:0038201 GO:0040008 GO:0042221 GO:0042325 GO:0042327 GO:0042594 GO:0043085 GO:0043200 GO:0043549 GO:0044093 GO:0044424 GO:0044464 GO:0045859 GO:0045860 GO:0045927 GO:0045937 GO:0048316 GO:0048507 GO:0048518 GO:0048522 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0051716 GO:0060090 GO:0060255 GO:0061458 GO:0065007 GO:0065008 GO:0065009 GO:0070887 GO:0071229 GO:0071230 GO:0071310 GO:0071417 GO:0071495 GO:0071496 GO:0071840 GO:0071900 GO:0071902 GO:0080008 GO:0080090 GO:0090066 GO:0098727 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1902494 GO:1990234
KEGG Pathways
Metabolic & Signaling
ko04136 ko04138 ko04140 ko04150 ko04151 ko04152 ko04211 ko04213 ko04714 ko04910 ko05206 map04136 map04138 map04140 map04150 map04151 map04152 map04211 map04213 map04714 map04910 map05206
Pfam Domains
Protein Families
HEAT Raptor_N WD40

Protein Analysis

1267

Amino Acids

139.43

Weight (kDa)

6.15

Isoelectric Point (pI)

44.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Raptor_N PF14538 1 - 152 1.2e-70 Raptor N-terminal CASPase like domain
WD40_WDHD1_1st PF24817 932 - 1082 1.4e-06 WDHD1 first WD40 domain
Beta-prop_WDR5 PF25175 942 - 1111 3.5e-12 WDR5 beta-propeller domain
Beta-prop_TEP1_2nd PF25047 944 - 1134 2.4e-07 TEP-1 second beta-propeller
WD40_Prp19 PF24814 945 - 1111 1e-09 Prp19 WD40 domain
WD40_CDC20-Fz PF24807 1036 - 1124 1.2e-06 CDC20/Fizzy WD40 domain
Beta-prop_WDR3_1st PF25173 1048 - 1259 2.7e-09 WDR3 first beta-propeller domain
WD40_CDC20-Fz PF24807 1153 - 1258 5.6e-06 CDC20/Fizzy WD40 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 288
AasI GACNNNNNNGTC 1 cut(s) 3332
Acc36I ACCTGC 1 cut(s) 1442
AccB1I GGYRCC 3 cut(s) 1676, 2570, 3656
AccBSI CCGCTC 2 cut(s) 844, 3592
AccII CGCG 1 cut(s) 3767
AcoI YGGCCR 4 cut(s) 679, 1417, 1429, 3347
AcsI RAATTY 5 cut(s) 327, 557, 1275, 2498, 2780
AcuI CTGAAG 6 cut(s) 1079, 1235, 1466, 1511, 1845, 1895
AfaI GTAC 6 cut(s) 160, 244, 303, 1212, 2794, 3735
AflIII ACRYGT 2 cut(s) 626, 912
AhdI GACNNNNNGTC 1 cut(s) 1051
AjiI CACGTC 1 cut(s) 1427
AjnI CCWGG 8 cut(s) 389, 676, 1166, 1299, 1431, 1957, 2172, 3085
AjuI GAANNNNNNNTTGG 4 cut(s) 689, 721, 3381, 3413
Alw21I GWGCWC 3 cut(s) 465, 1621, 2715
Alw26I GTCTC 4 cut(s) 530, 651, 778, 2358
Ama87I CYCGRG 1 cut(s) 1142
AoxI GGCC 8 cut(s) 679, 1417, 1429, 1575, 2504, 3347, 3684, 3697
ApoI RAATTY 5 cut(s) 327, 557, 1275, 2498, 2780
ArsI GACNNNNNNTTYG 2 cut(s) 2765, 2797
Asp700I GAANNNNTTC 1 cut(s) 2032
AspLEI GCGC 1 cut(s) 3767
AspS9I GGNCC 7 cut(s) 1163, 1487, 1576, 1955, 1982, 3685, 3698
AsuC2I CCSGG 1 cut(s) 3447
AsuHPI GGTGA 6 cut(s) 335, 722, 1660, 3164, 3350, 3500
AsuII TTCGAA 2 cut(s) 823, 3094
AvaI CYCGRG 1 cut(s) 1142
AvaII GGWCC 4 cut(s) 1163, 1487, 1955, 1982
BaeGI GKGCMC 1 cut(s) 1679
BalI TGGCCA 2 cut(s) 1419, 1431
BanI GGYRCC 3 cut(s) 1676, 2570, 3656
BanII GRGCYC 3 cut(s) 465, 1132, 1638
BarI GAAGNNNNNNTAC 2 cut(s) 2020, 2052
BauI CACGAG 1 cut(s) 533
BbsI GAAGAC 3 cut(s) 11, 404, 2385
Bbv12I GWGCWC 3 cut(s) 465, 1621, 2715
BceAI ACGGC 1 cut(s) 666
BcgI CGANNNNNNTGC 2 cut(s) 2469, 2503
BciT130I CCWGG 8 cut(s) 391, 678, 1168, 1301, 1433, 1959, 2174, 3087
BciVI GTATCC 1 cut(s) 518
BcnI CCSGG 1 cut(s) 3447
BcoDI GTCTC 4 cut(s) 530, 651, 778, 2358
BfaI CTAG 9 cut(s) 23, 1310, 1841, 2051, 2166, 2334, 2495, 2679, 3713
BfmI CTRYAG 5 cut(s) 216, 1173, 1608, 3226, 3753
BfuAI ACCTGC 1 cut(s) 1442
BfuI GTATCC 1 cut(s) 518
BglII AGATCT 1 cut(s) 1177
BlpI GCTNAGC 2 cut(s) 1632, 3607
BmcAI AGTACT 1 cut(s) 3735
Bme1390I CCNGG 9 cut(s) 391, 678, 1168, 1301, 1433, 1959, 2174, 3087, 3447
Bme18I GGWCC 4 cut(s) 1163, 1487, 1955, 1982
BmeRI GACNNNNNGTC 1 cut(s) 1051
BmeT110I CYCGRG 1 cut(s) 1142
BmgBI CACGTC 1 cut(s) 1427
BmgT120I GGNCC 7 cut(s) 1163, 1487, 1576, 1955, 1982, 3685, 3698
BmiI GGNNCC 8 cut(s) 120, 1164, 1165, 1488, 1678, 2572, 2814, 3658
BmrFI CCNGG 9 cut(s) 391, 678, 1168, 1301, 1433, 1959, 2174, 3087, 3447
BmsI GCATC 4 cut(s) 910, 1591, 3257, 3748
BpiI GAAGAC 3 cut(s) 11, 404, 2385
BpmI CTGGAG 1 cut(s) 2577
Bpu10I CCTNAGC 1 cut(s) 2883
Bpu1102I GCTNAGC 2 cut(s) 1632, 3607
Bpu14I TTCGAA 2 cut(s) 823, 3094
BpuEI CTTGAG 4 cut(s) 175, 2977, 3237, 3777
BpuMI CCSGG 1 cut(s) 3447
BsaWI WCCGGW 2 cut(s) 693, 1642
BsaXI ACNNNNNCTCC 4 cut(s) 2128, 2158, 2608, 2638
Bse118I RCCGGY 1 cut(s) 2727
Bse1I ACTGG 4 cut(s) 725, 1290, 2794, 3600
Bse3DI GCAATG 6 cut(s) 1389, 1723, 2008, 2146, 2343, 3594
BseBI CCWGG 8 cut(s) 391, 678, 1168, 1301, 1433, 1959, 2174, 3087
BseGI GGATG 7 cut(s) 17, 880, 925, 1324, 2029, 3161, 3721
BseMI GCAATG 6 cut(s) 1389, 1723, 2008, 2146, 2343, 3594
BseNI ACTGG 4 cut(s) 725, 1290, 2794, 3600
BseRI GAGGAG 2 cut(s) 1611, 2702
BseSI GKGCMC 1 cut(s) 1679
BseX3I CGGCCG 1 cut(s) 3347
BseYI CCCAGC 1 cut(s) 2769
BsgI GTGCAG 1 cut(s) 607
Bsh1236I CGCG 1 cut(s) 3767
Bsh1285I CGRYCG 2 cut(s) 2390, 3350
BshFI GGCC 8 cut(s) 681, 1419, 1431, 1577, 2506, 3349, 3686, 3699
BshNI GGYRCC 3 cut(s) 1676, 2570, 3656
BsiEI CGRYCG 2 cut(s) 2390, 3350
BsiHKAI GWGCWC 3 cut(s) 465, 1621, 2715
BsiHKCI CYCGRG 1 cut(s) 1142
BsiSI CCGG 4 cut(s) 694, 1643, 2728, 3446
BslFI GGGAC 3 cut(s) 1176, 2031, 2786
BsmAI GTCTC 4 cut(s) 530, 651, 778, 2358
BsmBI CGTCTC 1 cut(s) 2358
BsmFI GGGAC 3 cut(s) 1176, 2031, 2786
BsmI GAATGC 1 cut(s) 2481
BsnI GGCC 8 cut(s) 681, 1419, 1431, 1577, 2506, 3349, 3686, 3699
BsoBI CYCGRG 1 cut(s) 1142
Bsp119I TTCGAA 2 cut(s) 823, 3094
Bsp1286I GDGCHC 6 cut(s) 465, 1132, 1621, 1638, 1679, 2715
Bsp1720I GCTNAGC 2 cut(s) 1632, 3607
Bsp19I CCATGG 1 cut(s) 2706
BspANI GGCC 8 cut(s) 681, 1419, 1431, 1577, 2506, 3349, 3686, 3699
BspFNI CGCG 1 cut(s) 3767
BspHI TCATGA 2 cut(s) 640, 769
BspLI GGNNCC 8 cut(s) 120, 1164, 1165, 1488, 1678, 2572, 2814, 3658
BspMAI CTGCAG 2 cut(s) 1612, 3757
BspMI ACCTGC 1 cut(s) 1442
BspT104I TTCGAA 2 cut(s) 823, 3094
BspT107I GGYRCC 3 cut(s) 1676, 2570, 3656
BsrBI CCGCTC 2 cut(s) 844, 3592
BsrDI GCAATG 6 cut(s) 1389, 1723, 2008, 2146, 2343, 3594
BsrFI RCCGGY 1 cut(s) 2727
BsrI ACTGG 4 cut(s) 725, 1290, 2794, 3600
BssAI RCCGGY 1 cut(s) 2727
BssSI CACGAG 1 cut(s) 533
BssT1I CCWWGG 3 cut(s) 182, 2453, 2706
Bst2BI CACGAG 1 cut(s) 533
Bst2UI CCWGG 8 cut(s) 391, 678, 1168, 1301, 1433, 1959, 2174, 3087
Bst6I CTCTTC 4 cut(s) 546, 2023, 2476, 2677
BstAPI GCANNNNNTGC 3 cut(s) 1388, 1616, 3245
BstBI TTCGAA 2 cut(s) 823, 3094
BstDSI CCRYGG 3 cut(s) 1048, 2313, 2706
BstF5I GGATG 7 cut(s) 17, 880, 925, 1324, 2029, 3161, 3721
BstFNI CGCG 1 cut(s) 3767
BstHHI GCGC 1 cut(s) 3767
BstMAI GTCTC 4 cut(s) 530, 651, 778, 2358
BstMCI CGRYCG 2 cut(s) 2390, 3350
BstNI CCWGG 8 cut(s) 391, 678, 1168, 1301, 1433, 1959, 2174, 3087
BstNSI RCATGY 4 cut(s) 249, 916, 3331, 3480
BstSCI CCNGG 9 cut(s) 389, 676, 1166, 1299, 1431, 1957, 2172, 3085, 3445
BstSFI CTRYAG 5 cut(s) 216, 1173, 1608, 3226, 3753
BstSLI GKGCMC 1 cut(s) 1679
BstUI CGCG 1 cut(s) 3767
BstV2I GAAGAC 3 cut(s) 11, 404, 2385
BstX2I RGATCY 8 cut(s) 103, 491, 1177, 1306, 2075, 2227, 3178, 3523
BstXI CCANNNNNNTGG 5 cut(s) 290, 604, 1427, 1586, 3695
BstYI RGATCY 8 cut(s) 103, 491, 1177, 1306, 2075, 2227, 3178, 3523
BstZI CGGCCG 1 cut(s) 3347
BsuI GTATCC 1 cut(s) 518
BsuRI GGCC 8 cut(s) 681, 1419, 1431, 1577, 2506, 3349, 3686, 3699
BtgI CCRYGG 3 cut(s) 1048, 2313, 2706
BtrI CACGTC 1 cut(s) 1427
BtsCI GGATG 7 cut(s) 17, 880, 925, 1324, 2029, 3161, 3721
BtsIMutI CAGTG 6 cut(s) 738, 1011, 1283, 1535, 2201, 3607
BveI ACCTGC 1 cut(s) 1442
CciI TCATGA 2 cut(s) 640, 769
CciNI GCGGCCGC 1 cut(s) 3347
CfoI GCGC 1 cut(s) 3767
Cfr10I RCCGGY 1 cut(s) 2727
Cfr13I GGNCC 7 cut(s) 1163, 1487, 1576, 1955, 1982, 3685, 3698
CseI GACGC 3 cut(s) 1854, 2340, 3756
CsiI ACCWGGT 1 cut(s) 3085
Csp6I GTAC 6 cut(s) 159, 243, 302, 1211, 2793, 3734
CviQI GTAC 6 cut(s) 159, 243, 302, 1211, 2793, 3734
DraI TTTAAA 1 cut(s) 36
DrdI GACNNNNNNGTC 1 cut(s) 3332
DriI GACNNNNNGTC 1 cut(s) 1051
DseDI GACNNNNNNGTC 1 cut(s) 3332
EaeI YGGCCR 4 cut(s) 679, 1417, 1429, 3347
EagI CGGCCG 1 cut(s) 3347
Eam1104I CTCTTC 4 cut(s) 546, 2023, 2476, 2677
Eam1105I GACNNNNNGTC 1 cut(s) 1051
EarI CTCTTC 4 cut(s) 546, 2023, 2476, 2677
EciI GGCGGA 1 cut(s) 42
Ecl136II GAGCTC 1 cut(s) 463
EclXI CGGCCG 1 cut(s) 3347
Eco130I CCWWGG 3 cut(s) 182, 2453, 2706
Eco147I AGGCCT 1 cut(s) 2506
Eco24I GRGCYC 3 cut(s) 465, 1132, 1638
Eco32I GATATC 3 cut(s) 72, 3137, 3508
Eco47I GGWCC 4 cut(s) 1163, 1487, 1955, 1982
Eco52I CGGCCG 1 cut(s) 3347
Eco53kI GAGCTC 1 cut(s) 463
Eco57I CTGAAG 6 cut(s) 1079, 1235, 1466, 1511, 1845, 1895
Eco88I CYCGRG 1 cut(s) 1142
EcoICRI GAGCTC 1 cut(s) 463
EcoO109I RGGNCCY 2 cut(s) 1163, 1955
EcoRII CCWGG 8 cut(s) 389, 676, 1166, 1299, 1431, 1957, 2172, 3085
EcoRV GATATC 3 cut(s) 72, 3137, 3508
EcoT14I CCWWGG 3 cut(s) 182, 2453, 2706
EcoT22I ATGCAT 2 cut(s) 925, 2073
EcoT38I GRGCYC 3 cut(s) 465, 1132, 1638
ErhI CCWWGG 3 cut(s) 182, 2453, 2706
Esp3I CGTCTC 1 cut(s) 2358
FalI AAGNNNNNCTT 4 cut(s) 2936, 2968, 3723, 3755
FaqI GGGAC 3 cut(s) 1176, 2031, 2786
FauNDI CATATG 1 cut(s) 1207
FokI GGATG 7 cut(s) 24, 867, 932, 1331, 2036, 3148, 3708
FriOI GRGCYC 3 cut(s) 465, 1132, 1638
FspBI CTAG 9 cut(s) 23, 1310, 1841, 2051, 2166, 2334, 2495, 2679, 3713
GlaI GCGC 1 cut(s) 3766
GsaI CCCAGC 1 cut(s) 2773
GsuI CTGGAG 1 cut(s) 2577
HaeIII GGCC 8 cut(s) 681, 1419, 1431, 1577, 2506, 3349, 3686, 3699
HapII CCGG 4 cut(s) 694, 1643, 2728, 3446
HgaI GACGC 3 cut(s) 1854, 2340, 3756
HhaI GCGC 1 cut(s) 3767
Hin6I GCGC 1 cut(s) 3765
HinP1I GCGC 1 cut(s) 3765
HincII GTYRAC 4 cut(s) 1023, 2152, 3269, 3289
HindII GTYRAC 4 cut(s) 1023, 2152, 3269, 3289
HindIII AAGCTT 4 cut(s) 233, 1437, 2747, 2945
HpaI GTTAAC 1 cut(s) 2152
HpaII CCGG 4 cut(s) 694, 1643, 2728, 3446
HphI GGTGA 6 cut(s) 335, 722, 1660, 3164, 3350, 3500
HpyCH4IV ACGT 3 cut(s) 414, 628, 1426
HpySE526I ACGT 3 cut(s) 414, 628, 1426
HspAI GCGC 1 cut(s) 3765
KflI GGGWCCC 1 cut(s) 1163
KroI GCCGGC 1 cut(s) 2727
KroNI GCCGGC 1 cut(s) 2729
KspAI GTTAAC 1 cut(s) 2152
LmnI GCTCC 7 cut(s) 124, 468, 1624, 2136, 2710, 3190, 3592
LweI GCATC 4 cut(s) 910, 1591, 3257, 3748
MabI ACCWGGT 1 cut(s) 3085
MaeI CTAG 9 cut(s) 23, 1310, 1841, 2051, 2166, 2334, 2495, 2679, 3713
MaeII ACGT 3 cut(s) 414, 628, 1426
MaeIII GTNAC 7 cut(s) 1101, 1921, 2213, 2318, 2624, 3052, 3488
MbiI CCGCTC 2 cut(s) 844, 3592
MfeI CAATTG 3 cut(s) 141, 747, 2611
MflI RGATCY 8 cut(s) 103, 491, 1177, 1306, 2075, 2227, 3178, 3523
MhlI GDGCHC 6 cut(s) 465, 1132, 1621, 1638, 1679, 2715
MlsI TGGCCA 2 cut(s) 1419, 1431
MluNI TGGCCA 2 cut(s) 1419, 1431
MlyI GAGTC 4 cut(s) 532, 653, 2374, 2527
MmeI TCCRAC 3 cut(s) 146, 1174, 1514
Mox20I TGGCCA 2 cut(s) 1419, 1431
Mph1103I ATGCAT 2 cut(s) 925, 2073
MroNI GCCGGC 1 cut(s) 2727
MroXI GAANNNNTTC 1 cut(s) 2032
MscI TGGCCA 2 cut(s) 1419, 1431
MslI CAYNNNNRTG 4 cut(s) 288, 602, 1425, 3726
Msp20I TGGCCA 2 cut(s) 1419, 1431
MspA1I CMGCKG 2 cut(s) 434, 3278
MspI CCGG 4 cut(s) 694, 1643, 2728, 3446
MspR9I CCNGG 9 cut(s) 391, 678, 1168, 1301, 1433, 1959, 2174, 3087, 3447
MssI GTTTAAAC 1 cut(s) 36
MunI CAATTG 3 cut(s) 141, 747, 2611
Mva1269I GAATGC 1 cut(s) 2481
MvaI CCWGG 8 cut(s) 391, 678, 1168, 1301, 1433, 1959, 2174, 3087
MvnI CGCG 1 cut(s) 3767
NaeI GCCGGC 1 cut(s) 2729
NciI CCSGG 1 cut(s) 3447
NcoI CCATGG 1 cut(s) 2706
NdeI CATATG 1 cut(s) 1207
NgoMIV GCCGGC 1 cut(s) 2727
NlaIV GGNNCC 8 cut(s) 120, 1164, 1165, 1488, 1678, 2572, 2814, 3658
NmeAIII GCCGAG 2 cut(s) 865, 2285
NmuCI GTSAC 3 cut(s) 1921, 2624, 3488
NotI GCGGCCGC 1 cut(s) 3347
NsiI ATGCAT 2 cut(s) 925, 2073
NspI RCATGY 4 cut(s) 249, 916, 3331, 3480
NspV TTCGAA 2 cut(s) 823, 3094
PagI TCATGA 2 cut(s) 640, 769
PasI CCCWGGG 1 cut(s) 1167
PceI AGGCCT 1 cut(s) 2506
PciI ACATGT 1 cut(s) 912
PctI GAATGC 1 cut(s) 2481
PdiI GCCGGC 1 cut(s) 2729
PdmI GAANNNNTTC 1 cut(s) 2032
PfeI GAWTC 9 cut(s) 386, 977, 1149, 1252, 2111, 2339, 2525, 2856, 2937
Ple19I CGATCG 1 cut(s) 2390
PleI GAGTC 4 cut(s) 532, 652, 2373, 2526
PmeI GTTTAAAC 1 cut(s) 36
PpsI GAGTC 4 cut(s) 532, 652, 2373, 2526
PpuMI RGGWCCY 2 cut(s) 1163, 1955
PscI ACATGT 1 cut(s) 912
PsiI TTATAA 1 cut(s) 288
Psp124BI GAGCTC 1 cut(s) 465
Psp5II RGGWCCY 2 cut(s) 1163, 1955
Psp6I CCWGG 8 cut(s) 389, 676, 1166, 1299, 1431, 1957, 2172, 3085
PspFI CCCAGC 1 cut(s) 2769
PspGI CCWGG 8 cut(s) 389, 676, 1166, 1299, 1431, 1957, 2172, 3085
PspN4I GGNNCC 8 cut(s) 120, 1164, 1165, 1488, 1678, 2572, 2814, 3658
PspPI GGNCC 7 cut(s) 1163, 1487, 1576, 1955, 1982, 3685, 3698
PspPPI RGGWCCY 2 cut(s) 1163, 1955
PstI CTGCAG 2 cut(s) 1612, 3757
PsuI RGATCY 8 cut(s) 103, 491, 1177, 1306, 2075, 2227, 3178, 3523
PvuI CGATCG 1 cut(s) 2390
PvuII CAGCTG 1 cut(s) 3278
RsaI GTAC 6 cut(s) 160, 244, 303, 1212, 2794, 3735
RsaNI GTAC 6 cut(s) 159, 243, 302, 1211, 2793, 3734
RseI CAYNNNNRTG 4 cut(s) 288, 602, 1425, 3726
SacI GAGCTC 1 cut(s) 465
Sau96I GGNCC 7 cut(s) 1163, 1487, 1576, 1955, 1982, 3685, 3698
ScaI AGTACT 1 cut(s) 3735
SchI GAGTC 4 cut(s) 532, 653, 2374, 2527
ScrFI CCNGG 9 cut(s) 391, 678, 1168, 1301, 1433, 1959, 2174, 3087, 3447
SduI GDGCHC 6 cut(s) 465, 1132, 1621, 1638, 1679, 2715
SexAI ACCWGGT 1 cut(s) 3085
SfaNI GCATC 4 cut(s) 910, 1591, 3257, 3748
SfcI CTRYAG 5 cut(s) 216, 1173, 1608, 3226, 3753
SfuI TTCGAA 2 cut(s) 823, 3094
SinI GGWCC 4 cut(s) 1163, 1487, 1955, 1982
SmiMI CAYNNNNRTG 4 cut(s) 288, 602, 1425, 3726
SmlI CTYRAG 4 cut(s) 154, 2992, 3252, 3792
SmoI CTYRAG 4 cut(s) 154, 2992, 3252, 3792
SseBI AGGCCT 1 cut(s) 2506
SspI AATATT 4 cut(s) 1200, 1584, 2121, 2673
SspMI CTAG 9 cut(s) 23, 1310, 1841, 2051, 2166, 2334, 2495, 2679, 3713
SstI GAGCTC 1 cut(s) 465
StuI AGGCCT 1 cut(s) 2506
StyD4I CCNGG 9 cut(s) 389, 676, 1166, 1299, 1431, 1957, 2172, 3085, 3445
StyI CCWWGG 3 cut(s) 182, 2453, 2706
TaiI ACGT 3 cut(s) 417, 631, 1429
TaqI TCGA 9 cut(s) 823, 1880, 1991, 2329, 2386, 2403, 3094, 3183, 3540
TatI WGTACW 4 cut(s) 158, 242, 1210, 3733
TauI GCSGC 5 cut(s) 252, 434, 2840, 3349, 3352
TfiI GAWTC 9 cut(s) 386, 977, 1149, 1252, 2111, 2339, 2525, 2856, 2937
TscAI CASTG 6 cut(s) 745, 1018, 1290, 1535, 2201, 3607
TseFI GTSAC 3 cut(s) 1921, 2624, 3488
Tsp45I GTSAC 3 cut(s) 1921, 2624, 3488
TspGWI ACGGA 1 cut(s) 3714
TspRI CASTG 6 cut(s) 745, 1018, 1290, 1535, 2201, 3607
VpaK11BI GGWCC 4 cut(s) 1163, 1487, 1955, 1982
XapI RAATTY 5 cut(s) 327, 557, 1275, 2498, 2780
XbaI TCTAGA 1 cut(s) 2494
XceI RCATGY 4 cut(s) 249, 916, 3331, 3480
XcmI CCANNNNNNNNNTGG 1 cut(s) 473
XmnI GAANNNNTTC 1 cut(s) 2032
XspI CTAG 9 cut(s) 23, 1310, 1841, 2051, 2166, 2334, 2495, 2679, 3713
ZrmI AGTACT 1 cut(s) 3735
Zsp2I ATGCAT 2 cut(s) 925, 2073
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.