Rh3BG338500

Regulatory-associated protein of TOR

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0002483
Physical Location & Seq
Reverse (-)
36231737 .. 36240266
8530 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG338500.1

Sequence Viewer

Length: 1002 bp
ATGGATAAGGACACAGGTGAGAGTATAGGAAGTGTGATTGGTCAATATGTCAAGATAGGGAAGGATCACTTTGGCAGTTGCCTGGATAGTTTTCTGAAGATTACGGTAGGTATTGACATTACAGTTCCTTTGAAGAAGTGGATTATATTTGAGCCTGAAGGGGAGGAAGCCAATCTACATGATGTGGAGTATGAGAGATTACCAAATTTCTGCTTCTTCTGCGGACTATTATCACACACTGGGGTGGTTGTCCACTCCATCAGTAGGGGAAGGCTGGGTCTTAATAGAGTCGTGAATATGGGGTGGAGAATGGTGGCGCCGGACCTACCAACTGCTGGATTGGTTCGCTCTAGGGAGGAATTGGAGATGGATGATCACGCCCTAGAATTTTCTGGGAATGTTCTAATGGAGCTGTTAGCAAGCTTAATAATCAAACTGCAAGCTGGGACACAAAAATTGAAACGGGTACGAAAAGCATTTTGCTGGAACCATATTGTGATTGCGGCTGATGAGAATGAACGAATCAGGGTATGGAATTACCAAGAGACTAAGGAGGTTATCCTCCTGAACAGCTTTGATAACCATGATTTTCCAGACAAGGGAATCTCCAAGCTTTGCTTTGTGAATGAACTTGATGACAGCTTGCTTCTTGCTGCCTCAAATATAGTCAGTGCATGTCAGGCTGGTGACATTCAGTTCCTTGATATCAGAAATAGTAAAGATCCCTACCTCACAATCGAAGCTCATAGGAGTTCACTCACAGCTTTAGCTGTTCATAGACACGCCCCGCTCATTGCCAGTGGTGGCTCAGCCAAGCAGCTCATGAAAGTCTTTAGTTTGGAGGGCGAACAATTAGGCACCATTAGATACTACCCTTCCTTTATGGCCCAAAAAATTGGTCCTGTTAGTTGCCTAGCCTTCCATCCGTATGAAGTACTGCTTGCTACTGGTGCTGCAGATGCTTGCGCGTCCATCTATGCTGATGACAACTCTCTAAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000151 GO:0001101 GO:0001558 GO:0001932 GO:0001934 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008361 GO:0009267 GO:0009605 GO:0009719 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009893 GO:0009894 GO:0009987 GO:0009991 GO:0010033 GO:0010073 GO:0010074 GO:0010154 GO:0010243 GO:0010492 GO:0010506 GO:0010562 GO:0010604 GO:0016043 GO:0019220 GO:0019222 GO:0019827 GO:0022414 GO:0023052 GO:0030307 GO:0030674 GO:0031323 GO:0031325 GO:0031329 GO:0031399 GO:0031401 GO:0031461 GO:0031667 GO:0031668 GO:0031669 GO:0031929 GO:0031931 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0032535 GO:0032991 GO:0033554 GO:0033674 GO:0035556 GO:0038201 GO:0040008 GO:0042221 GO:0042325 GO:0042327 GO:0042594 GO:0043085 GO:0043200 GO:0043549 GO:0044093 GO:0044424 GO:0044464 GO:0045859 GO:0045860 GO:0045927 GO:0045937 GO:0048316 GO:0048507 GO:0048518 GO:0048522 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0051716 GO:0060090 GO:0060255 GO:0061458 GO:0065007 GO:0065008 GO:0065009 GO:0070887 GO:0071229 GO:0071230 GO:0071310 GO:0071417 GO:0071495 GO:0071496 GO:0071840 GO:0071900 GO:0071902 GO:0080008 GO:0080090 GO:0090066 GO:0098727 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1902494 GO:1990234
KEGG Pathways
Metabolic & Signaling
ko04136 ko04138 ko04140 ko04150 ko04151 ko04152 ko04211 ko04213 ko04714 ko04910 ko05206 map04136 map04138 map04140 map04150 map04151 map04152 map04211 map04213 map04714 map04910 map05206
Pfam Domains
Protein Families
HEAT Raptor_N WD40

Protein Analysis

333

Amino Acids

36.94

Weight (kDa)

5.67

Isoelectric Point (pI)

30.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-CCHC_4 PF14392 38 - 80 1.6e-07 Zinc knuckle
WD40_CDC20-Fz PF24807 163 - 325 2.1e-08 CDC20/Fizzy WD40 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 316, 857
AccB7I CCANNNNNTGG 1 cut(s) 335
AccBSI CCGCTC 1 cut(s) 790
AccII CGCG 1 cut(s) 968
AciI CCGC 3 cut(s) 222, 503, 788
AclWI GGATC 2 cut(s) 72, 716
AcsI RAATTY 2 cut(s) 205, 386
AcuI CTGAAG 2 cut(s) 116, 177
AcyI GRCGYC 1 cut(s) 317
AfaI GTAC 2 cut(s) 468, 936
AfiI CCNNNNNNNGG 3 cut(s) 264, 335, 599
AgsI TTSAA 2 cut(s) 133, 460
AjnI CCWGG 1 cut(s) 81
AleI CACNNNNGTG 1 cut(s) 242
Alw26I GTCTC 1 cut(s) 539
AlwI GGATC 2 cut(s) 72, 716
AoxI GGCC 1 cut(s) 885
ApeKI GCWGC 3 cut(s) 653, 817, 953
ApoI RAATTY 2 cut(s) 205, 386
ArsI GACNNNNNNTTYG 2 cut(s) 883, 915
AspLEI GCGC 2 cut(s) 319, 968
AspS9I GGNCC 3 cut(s) 322, 886, 899
AsuHPI GGTGA 2 cut(s) 29, 698
AvaII GGWCC 2 cut(s) 322, 899
BanI GGYRCC 2 cut(s) 316, 857
BarI GAAGNNNNNNTAC 2 cut(s) 159, 191
BbvI GCAGC 3 cut(s) 640, 829, 940
BccI CCATC 4 cut(s) 266, 361, 930, 980
BciT130I CCWGG 1 cut(s) 83
BclI TGATCA 1 cut(s) 373
BcoDI GTCTC 1 cut(s) 539
BfaI CTAG 3 cut(s) 351, 383, 914
BfmI CTRYAG 1 cut(s) 954
BfoI RGCGCY 1 cut(s) 320
BisI GCNGC 4 cut(s) 504, 654, 818, 954
BlpI GCTNAGC 1 cut(s) 808
BlsI GCNGC 4 cut(s) 505, 655, 819, 955
BmcAI AGTACT 1 cut(s) 936
Bme1390I CCNGG 1 cut(s) 83
Bme18I GGWCC 2 cut(s) 322, 899
BmgT120I GGNCC 3 cut(s) 322, 886, 899
BmiI GGNNCC 3 cut(s) 318, 488, 859
BmrFI CCNGG 1 cut(s) 83
BmrI ACTGGG 1 cut(s) 249
BmsI GCATC 1 cut(s) 949
BmuI ACTGGG 1 cut(s) 249
Bpu1102I GCTNAGC 1 cut(s) 808
BsaHI GRCGYC 1 cut(s) 317
Bsc4I CCNNNNNNNGG 3 cut(s) 264, 335, 599
Bse1I ACTGG 3 cut(s) 244, 798, 952
Bse3DI GCAATG 1 cut(s) 792
BseBI CCWGG 1 cut(s) 83
BseGI GGATG 2 cut(s) 376, 922
BseLI CCNNNNNNNGG 3 cut(s) 264, 335, 599
BseMI GCAATG 1 cut(s) 792
BseMII CTCAG 1 cut(s) 822
BseNI ACTGG 3 cut(s) 244, 798, 952
BseXI GCAGC 3 cut(s) 640, 829, 940
BseYI CCCAGC 2 cut(s) 274, 443
Bsh1236I CGCG 1 cut(s) 968
BshFI GGCC 1 cut(s) 887
BshNI GGYRCC 2 cut(s) 316, 857
BsiSI CCGG 1 cut(s) 320
BslFI GGGAC 1 cut(s) 460
BslI CCNNNNNNNGG 3 cut(s) 264, 335, 599
BsmAI GTCTC 1 cut(s) 539
BsmFI GGGAC 1 cut(s) 460
BsnI GGCC 1 cut(s) 887
Bsp143I GATC 3 cut(s) 64, 373, 721
Bsp1720I GCTNAGC 1 cut(s) 808
BspACI CCGC 3 cut(s) 222, 503, 788
BspANI GGCC 1 cut(s) 887
BspCNI CTCAG 1 cut(s) 821
BspFNI CGCG 1 cut(s) 968
BspHI TCATGA 1 cut(s) 822
BspLI GGNNCC 3 cut(s) 318, 488, 859
BspMAI CTGCAG 1 cut(s) 958
BspPI GGATC 2 cut(s) 72, 716
BspT107I GGYRCC 2 cut(s) 316, 857
BsrBI CCGCTC 1 cut(s) 790
BsrDI GCAATG 1 cut(s) 792
BsrI ACTGG 3 cut(s) 244, 798, 952
BssMI GATC 3 cut(s) 64, 373, 721
BssNI GRCGYC 1 cut(s) 317
Bst2UI CCWGG 1 cut(s) 83
Bst4CI ACNGT 2 cut(s) 106, 124
BstACI GRCGYC 1 cut(s) 317
BstC8I GCNNGC 5 cut(s) 421, 441, 644, 942, 964
BstDEI CTNAG 2 cut(s) 549, 808
BstF5I GGATG 2 cut(s) 376, 922
BstFNI CGCG 1 cut(s) 968
BstH2I RGCGCY 1 cut(s) 320
BstHHI GCGC 2 cut(s) 319, 968
BstKTI GATC 3 cut(s) 67, 376, 724
BstMAI GTCTC 1 cut(s) 539
BstMBI GATC 3 cut(s) 64, 373, 721
BstMWI GCNNNNNNNGC 4 cut(s) 219, 680, 950, 959
BstNI CCWGG 1 cut(s) 83
BstNSI RCATGY 1 cut(s) 678
BstSCI CCNGG 1 cut(s) 81
BstSFI CTRYAG 1 cut(s) 954
BstUI CGCG 1 cut(s) 968
BstV1I GCAGC 3 cut(s) 640, 829, 940
BstX2I RGATCY 1 cut(s) 721
BstXI CCANNNNNNTGG 1 cut(s) 896
BstYI RGATCY 1 cut(s) 721
BsuRI GGCC 1 cut(s) 887
BtsCI GGATG 2 cut(s) 376, 922
BtsIMutI CAGTG 3 cut(s) 237, 676, 805
Cac8I GCNNGC 5 cut(s) 421, 441, 644, 942, 964
CciI TCATGA 1 cut(s) 822
CfoI GCGC 2 cut(s) 319, 968
Cfr13I GGNCC 3 cut(s) 322, 886, 899
CseI GACGC 1 cut(s) 957
Csp6I GTAC 2 cut(s) 467, 935
CviAII CATG 4 cut(s) 179, 584, 675, 823
CviQI GTAC 2 cut(s) 467, 935
DdeI CTNAG 2 cut(s) 549, 808
DinI GGCGCC 1 cut(s) 318
DpnI GATC 3 cut(s) 66, 375, 723
DpnII GATC 3 cut(s) 64, 373, 721
Eco32I GATATC 1 cut(s) 706
Eco47I GGWCC 2 cut(s) 322, 899
Eco57I CTGAAG 2 cut(s) 116, 177
EcoRII CCWGG 1 cut(s) 81
EcoRV GATATC 1 cut(s) 706
EgeI GGCGCC 1 cut(s) 318
EheI GGCGCC 1 cut(s) 318
FaeI CATG 4 cut(s) 182, 587, 678, 826
FalI AAGNNNNNCTT 6 cut(s) 53, 85, 602, 634, 924, 956
FaqI GGGAC 1 cut(s) 460
FatI CATG 4 cut(s) 178, 583, 674, 822
FauI CCCGC 1 cut(s) 795
FbaI TGATCA 1 cut(s) 373
Fnu4HI GCNGC 4 cut(s) 504, 654, 818, 954
FokI GGATG 2 cut(s) 383, 909
Fsp4HI GCNGC 4 cut(s) 504, 654, 818, 954
FspBI CTAG 3 cut(s) 351, 383, 914
GlaI GCGC 2 cut(s) 318, 967
GluI GCNGC 4 cut(s) 504, 654, 818, 954
GsaI CCCAGC 2 cut(s) 278, 447
HaeII RGCGCY 1 cut(s) 320
HaeIII GGCC 1 cut(s) 887
HapII CCGG 1 cut(s) 320
HgaI GACGC 1 cut(s) 957
HhaI GCGC 2 cut(s) 319, 968
Hin1I GRCGYC 1 cut(s) 317
Hin1II CATG 4 cut(s) 182, 587, 678, 826
Hin6I GCGC 2 cut(s) 317, 966
HinP1I GCGC 2 cut(s) 317, 966
HindIII AAGCTT 2 cut(s) 421, 611
HinfI GANTC 3 cut(s) 288, 522, 603
HpaII CCGG 1 cut(s) 320
HphI GGTGA 2 cut(s) 29, 698
Hpy166II GTNNAC 2 cut(s) 253, 755
Hpy188I TCNGA 2 cut(s) 96, 710
Hpy188III TCNNGA 5 cut(s) 52, 292, 565, 593, 823
Hpy8I GTNNAC 2 cut(s) 253, 755
HpyAV CCTTC 5 cut(s) 55, 152, 264, 885, 928
HpyCH4III ACNGT 2 cut(s) 106, 124
HpyCH4V TGCA 3 cut(s) 439, 674, 956
HpyF10VI GCNNNNNNNGC 4 cut(s) 219, 680, 950, 959
HpyF3I CTNAG 2 cut(s) 549, 808
Hsp92I GRCGYC 1 cut(s) 317
Hsp92II CATG 4 cut(s) 182, 587, 678, 826
HspAI GCGC 2 cut(s) 317, 966
KasI GGCGCC 1 cut(s) 316
Ksp22I TGATCA 1 cut(s) 373
Kzo9I GATC 3 cut(s) 64, 373, 721
LmnI GCTCC 1 cut(s) 409
Lsp1109I GCAGC 3 cut(s) 640, 829, 940
LweI GCATC 1 cut(s) 949
MaeI CTAG 3 cut(s) 351, 383, 914
MaeIII GTNAC 1 cut(s) 686
MalI GATC 3 cut(s) 66, 375, 723
MbiI CCGCTC 1 cut(s) 790
MboI GATC 3 cut(s) 64, 373, 721
MboII GAAGA 3 cut(s) 109, 145, 208
MflI RGATCY 1 cut(s) 721
MluCI AATT 7 cut(s) 205, 359, 386, 455, 535, 851, 894
Mly113I GGCGCC 1 cut(s) 317
MlyI GAGTC 1 cut(s) 297
MnlI CCTC 7 cut(s) 157, 349, 547, 572, 667, 740, 835
MseI TTAA 2 cut(s) 282, 425
MslI CAYNNNNRTG 2 cut(s) 242, 927
MspI CCGG 1 cut(s) 320
MspR9I CCNGG 1 cut(s) 83
MvaI CCWGG 1 cut(s) 83
MvnI CGCG 1 cut(s) 968
MwoI GCNNNNNNNGC 4 cut(s) 219, 680, 950, 959
NarI GGCGCC 1 cut(s) 317
NdeII GATC 3 cut(s) 64, 373, 721
NlaIII CATG 4 cut(s) 182, 587, 678, 826
NlaIV GGNNCC 3 cut(s) 318, 488, 859
NmuCI GTSAC 1 cut(s) 686
NspI RCATGY 1 cut(s) 678
OliI CACNNNNGTG 1 cut(s) 242
PagI TCATGA 1 cut(s) 822
PfeI GAWTC 2 cut(s) 522, 603
PflMI CCANNNNNTGG 1 cut(s) 335
PkrI GCNGC 4 cut(s) 505, 655, 819, 955
PleI GAGTC 1 cut(s) 296
PluTI GGCGCC 1 cut(s) 320
PpsI GAGTC 1 cut(s) 296
Psp6I CCWGG 1 cut(s) 81
PspFI CCCAGC 2 cut(s) 274, 443
PspGI CCWGG 1 cut(s) 81
PspN4I GGNNCC 3 cut(s) 318, 488, 859
PspPI GGNCC 3 cut(s) 322, 886, 899
PstI CTGCAG 1 cut(s) 958
PsuI RGATCY 1 cut(s) 721
RsaI GTAC 2 cut(s) 468, 936
RsaNI GTAC 2 cut(s) 467, 935
RseI CAYNNNNRTG 2 cut(s) 242, 927
SaqAI TTAA 2 cut(s) 282, 425
SatI GCNGC 4 cut(s) 504, 654, 818, 954
Sau3AI GATC 3 cut(s) 64, 373, 721
Sau96I GGNCC 3 cut(s) 322, 886, 899
ScaI AGTACT 1 cut(s) 936
SchI GAGTC 1 cut(s) 297
ScrFI CCNGG 1 cut(s) 83
SfaNI GCATC 1 cut(s) 949
SfcI CTRYAG 1 cut(s) 954
SfoI GGCGCC 1 cut(s) 318
SinI GGWCC 2 cut(s) 322, 899
SmiMI CAYNNNNRTG 2 cut(s) 242, 927
Sse9I AATT 7 cut(s) 205, 359, 386, 455, 535, 851, 894
SsiI CCGC 3 cut(s) 222, 503, 788
SspDI GGCGCC 1 cut(s) 316
SspMI CTAG 3 cut(s) 351, 383, 914
StyD4I CCNGG 1 cut(s) 81
TaaI ACNGT 2 cut(s) 106, 124
TaqI TCGA 1 cut(s) 738
TasI AATT 7 cut(s) 205, 359, 386, 455, 535, 851, 894
TatI WGTACW 1 cut(s) 934
TauI GCSGC 1 cut(s) 506
TfiI GAWTC 2 cut(s) 522, 603
Tru1I TTAA 2 cut(s) 282, 425
Tru9I TTAA 2 cut(s) 282, 425
TscAI CASTG 3 cut(s) 244, 676, 805
TseFI GTSAC 1 cut(s) 686
TseI GCWGC 3 cut(s) 653, 817, 953
Tsp45I GTSAC 1 cut(s) 686
TspDTI ATGAA 5 cut(s) 531, 642, 764, 839, 945
TspGWI ACGGA 1 cut(s) 915
TspRI CASTG 3 cut(s) 244, 676, 805
Van91I CCANNNNNTGG 1 cut(s) 335
VpaK11BI GGWCC 2 cut(s) 322, 899
XapI RAATTY 2 cut(s) 205, 386
XceI RCATGY 1 cut(s) 678
XspI CTAG 3 cut(s) 351, 383, 914
ZrmI AGTACT 1 cut(s) 936
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.