Rh3DG338100

Regulatory-associated protein of TOR

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0002483
Physical Location & Seq
Reverse (-)
37656494 .. 37658198
1705 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG338100.1

Sequence Viewer

Length: 507 bp
ATGAACGAATCAGGGTATGGAATTACCAAGAGACTAAGGAGGTTTGTCTGTGAAATGCGGCCGCACACTCCAAAGGTAGATAGAGTGGTAGGAAACGCACAGAAGATAGAAAGAGCTGTTGGGAACACTCAGAAGGTAGAAAGAGTTGTGGGGATTGGCTTTCAACCGGGGCTTGATCCTTCTAAGGCTGGTGACATTCAGTTCCTTGATATCAGAAGTAGTACAGATCCCTACCTCACAATCGAAGCTCATAGGGGTTCACTCACAGCTTTAGCTGTTCATAGACACGCCCCGGTCATTGCCAGTGGTGGCTCTGCCAAGCAGCTCATGAAAGTCTTTAGTTTGGAGGGCGAACAATTAGGCACCATTAGATACTACCCTTCCTTTATGGCCCAAAAAATTGGTCCTGTTAGTTGCCTAGCCTTCCATCCTTATGAAGTACTGCTTGCTACTGGTGCTGCAGATGCTTGCGCGTCCATCTATGCCGATGACAACTCTCTAAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000151 GO:0001101 GO:0001558 GO:0001932 GO:0001934 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008361 GO:0009267 GO:0009605 GO:0009719 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009893 GO:0009894 GO:0009987 GO:0009991 GO:0010033 GO:0010073 GO:0010074 GO:0010154 GO:0010243 GO:0010492 GO:0010506 GO:0010562 GO:0010604 GO:0016043 GO:0019220 GO:0019222 GO:0019827 GO:0022414 GO:0023052 GO:0030307 GO:0030674 GO:0031323 GO:0031325 GO:0031329 GO:0031399 GO:0031401 GO:0031461 GO:0031667 GO:0031668 GO:0031669 GO:0031929 GO:0031931 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0032535 GO:0032991 GO:0033554 GO:0033674 GO:0035556 GO:0038201 GO:0040008 GO:0042221 GO:0042325 GO:0042327 GO:0042594 GO:0043085 GO:0043200 GO:0043549 GO:0044093 GO:0044424 GO:0044464 GO:0045859 GO:0045860 GO:0045927 GO:0045937 GO:0048316 GO:0048507 GO:0048518 GO:0048522 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0051716 GO:0060090 GO:0060255 GO:0061458 GO:0065007 GO:0065008 GO:0065009 GO:0070887 GO:0071229 GO:0071230 GO:0071310 GO:0071417 GO:0071495 GO:0071496 GO:0071840 GO:0071900 GO:0071902 GO:0080008 GO:0080090 GO:0090066 GO:0098727 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1902494 GO:1990234
KEGG Pathways
Metabolic & Signaling
ko04136 ko04138 ko04140 ko04150 ko04151 ko04152 ko04211 ko04213 ko04714 ko04910 ko05206 map04136 map04138 map04140 map04150 map04151 map04152 map04211 map04213 map04714 map04910 map05206
Pfam Domains
Protein Families
HEAT Raptor_N WD40

Protein Analysis

168

Amino Acids

18.26

Weight (kDa)

9.03

Isoelectric Point (pI)

32.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WD40_CDC20-Fz PF24807 61 - 160 7.4e-06 CDC20/Fizzy WD40 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 362
AccII CGCG 1 cut(s) 473
AciI CCGC 2 cut(s) 58, 62
AclWI GGATC 2 cut(s) 170, 221
AcoI YGGCCR 1 cut(s) 59
AfaI GTAC 2 cut(s) 223, 441
AgsI TTSAA 1 cut(s) 164
AjuI GAANNNNNNNTTGG 2 cut(s) 102, 134
AluBI AGCT 5 cut(s) 116, 248, 269, 275, 325
AluI AGCT 5 cut(s) 116, 248, 269, 275, 325
Alw26I GTCTC 1 cut(s) 25
AlwI GGATC 2 cut(s) 170, 221
AoxI GGCC 2 cut(s) 59, 390
ApeKI GCWGC 2 cut(s) 322, 458
ArsI GACNNNNNNTTYG 2 cut(s) 388, 420
AspLEI GCGC 1 cut(s) 473
AspS9I GGNCC 2 cut(s) 391, 404
AsuC2I CCSGG 2 cut(s) 168, 293
AsuHPI GGTGA 1 cut(s) 203
AvaII GGWCC 1 cut(s) 404
BanI GGYRCC 1 cut(s) 362
BbvI GCAGC 2 cut(s) 334, 445
BccI CCATC 2 cut(s) 435, 485
BcnI CCSGG 2 cut(s) 168, 293
BcoDI GTCTC 1 cut(s) 25
BfaI CTAG 1 cut(s) 419
BfmI CTRYAG 1 cut(s) 459
BisI GCNGC 4 cut(s) 59, 62, 323, 459
BlsI GCNGC 4 cut(s) 60, 63, 324, 460
BmcAI AGTACT 1 cut(s) 441
Bme1390I CCNGG 2 cut(s) 168, 293
Bme18I GGWCC 1 cut(s) 404
BmgT120I GGNCC 2 cut(s) 391, 404
BmiI GGNNCC 1 cut(s) 364
BmrFI CCNGG 2 cut(s) 168, 293
BmsI GCATC 1 cut(s) 454
BpuMI CCSGG 2 cut(s) 168, 293
BsaJI CCNNGG 2 cut(s) 167, 291
Bse1I ACTGG 2 cut(s) 303, 457
Bse3DI GCAATG 1 cut(s) 297
BseDI CCNNGG 2 cut(s) 167, 291
BseGI GGATG 1 cut(s) 427
BseMI GCAATG 1 cut(s) 297
BseMII CTCAG 1 cut(s) 143
BseNI ACTGG 2 cut(s) 303, 457
BseX3I CGGCCG 1 cut(s) 59
BseXI GCAGC 2 cut(s) 334, 445
Bsh1236I CGCG 1 cut(s) 473
Bsh1285I CGRYCG 1 cut(s) 62
BshFI GGCC 2 cut(s) 61, 392
BshNI GGYRCC 1 cut(s) 362
BsiEI CGRYCG 1 cut(s) 62
BsiSI CCGG 2 cut(s) 167, 293
BsmAI GTCTC 1 cut(s) 25
BsnI GGCC 2 cut(s) 61, 392
Bsp143I GATC 2 cut(s) 175, 226
BspACI CCGC 2 cut(s) 58, 62
BspANI GGCC 2 cut(s) 61, 392
BspCNI CTCAG 1 cut(s) 142
BspFNI CGCG 1 cut(s) 473
BspHI TCATGA 1 cut(s) 327
BspLI GGNNCC 1 cut(s) 364
BspMAI CTGCAG 1 cut(s) 463
BspPI GGATC 2 cut(s) 170, 221
BspT107I GGYRCC 1 cut(s) 362
BsrDI GCAATG 1 cut(s) 297
BsrI ACTGG 2 cut(s) 303, 457
BssECI CCNNGG 2 cut(s) 167, 291
BssMI GATC 2 cut(s) 175, 226
BstC8I GCNNGC 2 cut(s) 447, 469
BstDEI CTNAG 3 cut(s) 35, 129, 183
BstF5I GGATG 1 cut(s) 427
BstFNI CGCG 1 cut(s) 473
BstHHI GCGC 1 cut(s) 473
BstKTI GATC 2 cut(s) 178, 229
BstMAI GTCTC 1 cut(s) 25
BstMBI GATC 2 cut(s) 175, 226
BstMCI CGRYCG 1 cut(s) 62
BstMWI GCNNNNNNNGC 2 cut(s) 455, 464
BstSCI CCNGG 2 cut(s) 166, 291
BstSFI CTRYAG 1 cut(s) 459
BstUI CGCG 1 cut(s) 473
BstV1I GCAGC 2 cut(s) 334, 445
BstX2I RGATCY 1 cut(s) 226
BstXI CCANNNNNNTGG 1 cut(s) 401
BstYI RGATCY 1 cut(s) 226
BstZI CGGCCG 1 cut(s) 59
BsuRI GGCC 2 cut(s) 61, 392
BtsCI GGATG 1 cut(s) 427
BtsIMutI CAGTG 1 cut(s) 310
Cac8I GCNNGC 2 cut(s) 447, 469
CciI TCATGA 1 cut(s) 327
CciNI GCGGCCGC 1 cut(s) 59
CfoI GCGC 1 cut(s) 473
Cfr13I GGNCC 2 cut(s) 391, 404
CseI GACGC 1 cut(s) 462
Csp6I GTAC 2 cut(s) 222, 440
CviAII CATG 1 cut(s) 328
CviQI GTAC 2 cut(s) 222, 440
DdeI CTNAG 3 cut(s) 35, 129, 183
DpnI GATC 2 cut(s) 177, 228
DpnII GATC 2 cut(s) 175, 226
EaeI YGGCCR 1 cut(s) 59
EagI CGGCCG 1 cut(s) 59
EclXI CGGCCG 1 cut(s) 59
Eco32I GATATC 1 cut(s) 211
Eco47I GGWCC 1 cut(s) 404
Eco52I CGGCCG 1 cut(s) 59
EcoRV GATATC 1 cut(s) 211
FaeI CATG 1 cut(s) 331
FaiI YATR 7 cut(s) 18, 252, 282, 329, 389, 435, 483
FalI AAGNNNNNCTT 2 cut(s) 429, 461
FatI CATG 1 cut(s) 327
Fnu4HI GCNGC 4 cut(s) 59, 62, 323, 459
FokI GGATG 1 cut(s) 414
Fsp4HI GCNGC 4 cut(s) 59, 62, 323, 459
FspBI CTAG 1 cut(s) 419
GlaI GCGC 1 cut(s) 472
GluI GCNGC 4 cut(s) 59, 62, 323, 459
HaeIII GGCC 2 cut(s) 61, 392
HapII CCGG 2 cut(s) 167, 293
HgaI GACGC 1 cut(s) 462
HhaI GCGC 1 cut(s) 473
Hin1II CATG 1 cut(s) 331
Hin6I GCGC 1 cut(s) 471
HinP1I GCGC 1 cut(s) 471
HinfI GANTC 1 cut(s) 8
HpaII CCGG 2 cut(s) 167, 293
HphI GGTGA 1 cut(s) 203
Hpy166II GTNNAC 1 cut(s) 260
Hpy188I TCNGA 2 cut(s) 132, 215
Hpy188III TCNNGA 1 cut(s) 328
Hpy8I GTNNAC 1 cut(s) 260
HpyAV CCTTC 4 cut(s) 127, 189, 390, 433
HpyCH4V TGCA 1 cut(s) 461
HpyF10VI GCNNNNNNNGC 2 cut(s) 455, 464
HpyF3I CTNAG 3 cut(s) 35, 129, 183
Hsp92II CATG 1 cut(s) 331
HspAI GCGC 1 cut(s) 471
Kzo9I GATC 2 cut(s) 175, 226
LpnPI CCDG 6 cut(s) 174, 180, 306, 316, 420, 438
Lsp1109I GCAGC 2 cut(s) 334, 445
LweI GCATC 1 cut(s) 454
MaeI CTAG 1 cut(s) 419
MaeIII GTNAC 1 cut(s) 191
MalI GATC 2 cut(s) 177, 228
MboI GATC 2 cut(s) 175, 226
MboII GAAGA 1 cut(s) 115
MflI RGATCY 1 cut(s) 226
MluCI AATT 3 cut(s) 21, 356, 399
MnlI CCTC 3 cut(s) 33, 245, 340
MslI CAYNNNNRTG 1 cut(s) 432
MspI CCGG 2 cut(s) 167, 293
MspR9I CCNGG 2 cut(s) 168, 293
MvnI CGCG 1 cut(s) 473
MwoI GCNNNNNNNGC 2 cut(s) 455, 464
NciI CCSGG 2 cut(s) 168, 293
NdeII GATC 2 cut(s) 175, 226
NlaIII CATG 1 cut(s) 331
NlaIV GGNNCC 1 cut(s) 364
NmuCI GTSAC 1 cut(s) 191
NotI GCGGCCGC 1 cut(s) 59
PagI TCATGA 1 cut(s) 327
PfeI GAWTC 1 cut(s) 8
PkrI GCNGC 4 cut(s) 60, 63, 324, 460
PspN4I GGNNCC 1 cut(s) 364
PspPI GGNCC 2 cut(s) 391, 404
PstI CTGCAG 1 cut(s) 463
PsuI RGATCY 1 cut(s) 226
RsaI GTAC 2 cut(s) 223, 441
RsaNI GTAC 2 cut(s) 222, 440
RseI CAYNNNNRTG 1 cut(s) 432
SatI GCNGC 4 cut(s) 59, 62, 323, 459
Sau3AI GATC 2 cut(s) 175, 226
Sau96I GGNCC 2 cut(s) 391, 404
ScaI AGTACT 1 cut(s) 441
ScrFI CCNGG 2 cut(s) 168, 293
SetI ASST 9 cut(s) 44, 78, 118, 138, 237, 250, 271, 277, 327
SfaNI GCATC 1 cut(s) 454
SfcI CTRYAG 1 cut(s) 459
SinI GGWCC 1 cut(s) 404
SmiMI CAYNNNNRTG 1 cut(s) 432
Sse9I AATT 3 cut(s) 21, 356, 399
SsiI CCGC 2 cut(s) 58, 62
SspMI CTAG 1 cut(s) 419
StyD4I CCNGG 2 cut(s) 166, 291
TaqI TCGA 1 cut(s) 243
TasI AATT 3 cut(s) 21, 356, 399
TatI WGTACW 2 cut(s) 221, 439
TauI GCSGC 2 cut(s) 61, 64
TfiI GAWTC 1 cut(s) 8
TscAI CASTG 1 cut(s) 310
TseFI GTSAC 1 cut(s) 191
TseI GCWGC 2 cut(s) 322, 458
Tsp45I GTSAC 1 cut(s) 191
TspDTI ATGAA 4 cut(s) 17, 269, 344, 450
TspRI CASTG 1 cut(s) 310
VpaK11BI GGWCC 1 cut(s) 404
XspI CTAG 1 cut(s) 419
ZrmI AGTACT 1 cut(s) 441
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.