Rh3AG303000

Regulatory-associated protein of TOR

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0002483
Physical Location & Seq
Reverse (-)
37384670 .. 37398090
13421 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG303000.1

Sequence Viewer

Length: 897 bp
ATGGCAGAGCCGACAAGGGGAACAGAGTTAACTTTGTGTGATGTACAAGTTTTGGAAAGTCCAGAGTTACAGGCAGCATTTATTACGGGGAGTAATGCTGTTAGCAAGCTTAATAATAAAACTGCAAGCTGGGACACAAAATTTGAAACGGGTACGAAAAGCATTTTGCTGGAACCATTCTCTCGTATTGTGATTGCGGCTGATGAGAGTGAACGAATCAGGGTATGGAATTACCAAGAGACTAAGGAGGTTATTCTTCTGAACAGCTTTGATAACCATGATTTTCCAGACAAGGGAATCTCCAAGCTTTGCTTTGAAGGCTTATTCATTCTCAATCAGACTGTAGCATTTCAGCATTGTCTGCATCTCAAGTTCATGGAAGTCAACTCACAGCTGGTTTTATTGACGGTTCTGTTAGGCTCTAAGATGCTTGTCCGTGAAATGCGGCCGCACACTCCAAAGGTGGATAGAGTTGTAGGAAACGCACAGAAGATAGAAAGAGCTGTTGGGAACACTCAGAAGGTAGAAAGAGTTGTGGGGATTGGCTATGATCCTTCTAAGATAGTAAGTACATGTCAGGCTGGTGACATTCAGTTCCTTGATATCAGAAGTAGTAAAGATCCCTACCTCACAATCGAAGCTCATAGGGGTTCACTCACAGCTTTAGCTGTTCATAGACACGCCCCACTCATTGCCAGTGGTGGCTCAGCCAAGCAGCTCATGACTGTCTTTAGTTTGGAGGGCGAACAATTAGGCACCATTAGATACTACCCTTCCTTTATGGCCCAAAAAATTGGTCCTGTTAGTTGCCTAGCCTTCCATCCGTATGTACTGCTTGCTACTGGTGCTGCAGATGCTTGCGCGTCCATCTATGCCGATGACAACTCTCTAAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000151 GO:0001101 GO:0001558 GO:0001932 GO:0001934 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008361 GO:0009267 GO:0009605 GO:0009719 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009893 GO:0009894 GO:0009987 GO:0009991 GO:0010033 GO:0010073 GO:0010074 GO:0010154 GO:0010243 GO:0010492 GO:0010506 GO:0010562 GO:0010604 GO:0016043 GO:0019220 GO:0019222 GO:0019827 GO:0022414 GO:0023052 GO:0030307 GO:0030674 GO:0031323 GO:0031325 GO:0031329 GO:0031399 GO:0031401 GO:0031461 GO:0031667 GO:0031668 GO:0031669 GO:0031929 GO:0031931 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0032535 GO:0032991 GO:0033554 GO:0033674 GO:0035556 GO:0038201 GO:0040008 GO:0042221 GO:0042325 GO:0042327 GO:0042594 GO:0043085 GO:0043200 GO:0043549 GO:0044093 GO:0044424 GO:0044464 GO:0045859 GO:0045860 GO:0045927 GO:0045937 GO:0048316 GO:0048507 GO:0048518 GO:0048522 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0051716 GO:0060090 GO:0060255 GO:0061458 GO:0065007 GO:0065008 GO:0065009 GO:0070887 GO:0071229 GO:0071230 GO:0071310 GO:0071417 GO:0071495 GO:0071496 GO:0071840 GO:0071900 GO:0071902 GO:0080008 GO:0080090 GO:0090066 GO:0098727 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1902494 GO:1990234
KEGG Pathways
Metabolic & Signaling
ko04136 ko04138 ko04140 ko04150 ko04151 ko04152 ko04211 ko04213 ko04714 ko04910 ko05206 map04136 map04138 map04140 map04150 map04151 map04152 map04211 map04213 map04714 map04910 map05206
Pfam Domains
Protein Families
HEAT Raptor_N WD40

Protein Analysis

298

Amino Acids

32.87

Weight (kDa)

6.45

Isoelectric Point (pI)

30.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WD40_CDC20-Fz PF24807 172 - 290 4.7e-07 CDC20/Fizzy WD40 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 755
AccII CGCG 1 cut(s) 863
AciI CCGC 3 cut(s) 197, 445, 449
AclWI GGATC 2 cut(s) 545, 614
AcoI YGGCCR 1 cut(s) 446
AcsI RAATTY 1 cut(s) 140
AfaI GTAC 4 cut(s) 45, 154, 571, 831
AfiI CCNNNNNNNGG 2 cut(s) 17, 293
AflIII ACRYGT 1 cut(s) 572
AgsI TTSAA 2 cut(s) 146, 317
AjuI GAANNNNNNNTTGG 2 cut(s) 489, 521
Alw26I GTCTC 1 cut(s) 233
AlwI GGATC 2 cut(s) 545, 614
AoxI GGCC 2 cut(s) 446, 783
ApeKI GCWGC 3 cut(s) 74, 715, 848
ApoI RAATTY 1 cut(s) 140
ArsI GACNNNNNNTTYG 4 cut(s) 125, 157, 781, 813
AspLEI GCGC 1 cut(s) 863
AspS9I GGNCC 2 cut(s) 784, 797
AsuHPI GGTGA 1 cut(s) 596
AvaII GGWCC 1 cut(s) 797
BanI GGYRCC 1 cut(s) 755
BbvI GCAGC 3 cut(s) 86, 727, 835
BccI CCATC 2 cut(s) 828, 875
BcoDI GTCTC 1 cut(s) 233
BfaI CTAG 1 cut(s) 812
BfmI CTRYAG 2 cut(s) 342, 849
BisI GCNGC 6 cut(s) 75, 198, 446, 449, 716, 849
BlpI GCTNAGC 1 cut(s) 706
BlsI GCNGC 6 cut(s) 76, 199, 447, 450, 717, 850
Bme18I GGWCC 1 cut(s) 797
BmgT120I GGNCC 2 cut(s) 784, 797
BmiI GGNNCC 2 cut(s) 174, 757
BmsI GCATC 3 cut(s) 373, 417, 844
Bpu1102I GCTNAGC 1 cut(s) 706
BpuEI CTTGAG 1 cut(s) 353
Bsc4I CCNNNNNNNGG 2 cut(s) 17, 293
Bse1I ACTGG 2 cut(s) 696, 847
Bse3DI GCAATG 1 cut(s) 690
BseGI GGATG 1 cut(s) 820
BseLI CCNNNNNNNGG 2 cut(s) 17, 293
BseMI GCAATG 1 cut(s) 690
BseMII CTCAG 2 cut(s) 530, 720
BseNI ACTGG 2 cut(s) 696, 847
BseX3I CGGCCG 1 cut(s) 446
BseXI GCAGC 3 cut(s) 86, 727, 835
BseYI CCCAGC 1 cut(s) 129
Bsh1236I CGCG 1 cut(s) 863
Bsh1285I CGRYCG 1 cut(s) 449
BshFI GGCC 2 cut(s) 448, 785
BshNI GGYRCC 1 cut(s) 755
BsiEI CGRYCG 1 cut(s) 449
BslFI GGGAC 1 cut(s) 146
BslI CCNNNNNNNGG 2 cut(s) 17, 293
BsmAI GTCTC 1 cut(s) 233
BsmFI GGGAC 1 cut(s) 146
BsnI GGCC 2 cut(s) 448, 785
Bsp1407I TGTACA 1 cut(s) 43
Bsp143I GATC 2 cut(s) 550, 619
Bsp1720I GCTNAGC 1 cut(s) 706
BspACI CCGC 3 cut(s) 197, 445, 449
BspANI GGCC 2 cut(s) 448, 785
BspCNI CTCAG 2 cut(s) 529, 719
BspFNI CGCG 1 cut(s) 863
BspHI TCATGA 1 cut(s) 720
BspLI GGNNCC 2 cut(s) 174, 757
BspMAI CTGCAG 1 cut(s) 853
BspPI GGATC 2 cut(s) 545, 614
BspT107I GGYRCC 1 cut(s) 755
BsrDI GCAATG 1 cut(s) 690
BsrGI TGTACA 1 cut(s) 43
BsrI ACTGG 2 cut(s) 696, 847
BssMI GATC 2 cut(s) 550, 619
Bst4CI ACNGT 3 cut(s) 343, 409, 727
BstAPI GCANNNNNTGC 1 cut(s) 361
BstAUI TGTACA 1 cut(s) 43
BstC8I GCNNGC 4 cut(s) 107, 127, 837, 859
BstDEI CTNAG 6 cut(s) 243, 423, 516, 558, 706, 890
BstF5I GGATG 1 cut(s) 820
BstFNI CGCG 1 cut(s) 863
BstHHI GCGC 1 cut(s) 863
BstKTI GATC 2 cut(s) 553, 622
BstMAI GTCTC 1 cut(s) 233
BstMBI GATC 2 cut(s) 550, 619
BstMCI CGRYCG 1 cut(s) 449
BstMWI GCNNNNNNNGC 4 cut(s) 318, 361, 845, 854
BstNSI RCATGY 1 cut(s) 576
BstSFI CTRYAG 2 cut(s) 342, 849
BstUI CGCG 1 cut(s) 863
BstV1I GCAGC 3 cut(s) 86, 727, 835
BstX2I RGATCY 1 cut(s) 619
BstXI CCANNNNNNTGG 1 cut(s) 794
BstYI RGATCY 1 cut(s) 619
BstZI CGGCCG 1 cut(s) 446
BsuRI GGCC 2 cut(s) 448, 785
BtsCI GGATG 1 cut(s) 820
BtsIMutI CAGTG 1 cut(s) 703
Cac8I GCNNGC 4 cut(s) 107, 127, 837, 859
CciI TCATGA 1 cut(s) 720
CciNI GCGGCCGC 1 cut(s) 446
CfoI GCGC 1 cut(s) 863
Cfr13I GGNCC 2 cut(s) 784, 797
CseI GACGC 1 cut(s) 852
Csp6I GTAC 4 cut(s) 44, 153, 570, 830
CviAII CATG 4 cut(s) 278, 376, 573, 721
CviQI GTAC 4 cut(s) 44, 153, 570, 830
DdeI CTNAG 6 cut(s) 243, 423, 516, 558, 706, 890
DpnI GATC 2 cut(s) 552, 621
DpnII GATC 2 cut(s) 550, 619
EaeI YGGCCR 1 cut(s) 446
EagI CGGCCG 1 cut(s) 446
EclXI CGGCCG 1 cut(s) 446
Eco32I GATATC 1 cut(s) 604
Eco47I GGWCC 1 cut(s) 797
Eco52I CGGCCG 1 cut(s) 446
EcoRV GATATC 1 cut(s) 604
FaeI CATG 4 cut(s) 281, 379, 576, 724
FalI AAGNNNNNCTT 2 cut(s) 296, 328
FaqI GGGAC 1 cut(s) 146
FatI CATG 4 cut(s) 277, 375, 572, 720
Fnu4HI GCNGC 6 cut(s) 75, 198, 446, 449, 716, 849
FokI GGATG 1 cut(s) 807
Fsp4HI GCNGC 6 cut(s) 75, 198, 446, 449, 716, 849
FspBI CTAG 1 cut(s) 812
GlaI GCGC 1 cut(s) 862
GluI GCNGC 6 cut(s) 75, 198, 446, 449, 716, 849
GsaI CCCAGC 1 cut(s) 133
HaeIII GGCC 2 cut(s) 448, 785
HgaI GACGC 1 cut(s) 852
HhaI GCGC 1 cut(s) 863
Hin1II CATG 4 cut(s) 281, 379, 576, 724
Hin6I GCGC 1 cut(s) 861
HinP1I GCGC 1 cut(s) 861
HincII GTYRAC 2 cut(s) 30, 385
HindII GTYRAC 2 cut(s) 30, 385
HindIII AAGCTT 2 cut(s) 107, 305
HinfI GANTC 2 cut(s) 216, 297
HpaI GTTAAC 1 cut(s) 30
HphI GGTGA 1 cut(s) 596
Hpy166II GTNNAC 4 cut(s) 30, 212, 385, 653
Hpy188I TCNGA 4 cut(s) 261, 339, 519, 608
Hpy188III TCNNGA 3 cut(s) 62, 287, 721
Hpy8I GTNNAC 4 cut(s) 30, 212, 385, 653
HpyAV CCTTC 5 cut(s) 311, 514, 564, 783, 826
HpyCH4III ACNGT 3 cut(s) 343, 409, 727
HpyCH4V TGCA 3 cut(s) 125, 364, 851
HpyF10VI GCNNNNNNNGC 4 cut(s) 318, 361, 845, 854
HpyF3I CTNAG 6 cut(s) 243, 423, 516, 558, 706, 890
Hsp92II CATG 4 cut(s) 281, 379, 576, 724
HspAI GCGC 1 cut(s) 861
KspAI GTTAAC 1 cut(s) 30
Kzo9I GATC 2 cut(s) 550, 619
Lsp1109I GCAGC 3 cut(s) 86, 727, 835
LweI GCATC 3 cut(s) 373, 417, 844
MaeI CTAG 1 cut(s) 812
MaeIII GTNAC 2 cut(s) 66, 584
MalI GATC 2 cut(s) 552, 621
MboI GATC 2 cut(s) 550, 619
MboII GAAGA 2 cut(s) 248, 502
MflI RGATCY 1 cut(s) 619
MluCI AATT 4 cut(s) 140, 229, 749, 792
MnlI CCTC 3 cut(s) 241, 638, 733
MseI TTAA 2 cut(s) 29, 111
MslI CAYNNNNRTG 1 cut(s) 825
MspA1I CMGCKG 1 cut(s) 394
MvnI CGCG 1 cut(s) 863
MwoI GCNNNNNNNGC 4 cut(s) 318, 361, 845, 854
NdeII GATC 2 cut(s) 550, 619
NlaIII CATG 4 cut(s) 281, 379, 576, 724
NlaIV GGNNCC 2 cut(s) 174, 757
NmuCI GTSAC 1 cut(s) 584
NotI GCGGCCGC 1 cut(s) 446
NspI RCATGY 1 cut(s) 576
PagI TCATGA 1 cut(s) 720
PciI ACATGT 1 cut(s) 572
PfeI GAWTC 2 cut(s) 216, 297
PkrI GCNGC 6 cut(s) 76, 199, 447, 450, 717, 850
PscI ACATGT 1 cut(s) 572
PspFI CCCAGC 1 cut(s) 129
PspN4I GGNNCC 2 cut(s) 174, 757
PspPI GGNCC 2 cut(s) 784, 797
PstI CTGCAG 1 cut(s) 853
PsuI RGATCY 1 cut(s) 619
PvuII CAGCTG 1 cut(s) 394
RsaI GTAC 4 cut(s) 45, 154, 571, 831
RsaNI GTAC 4 cut(s) 44, 153, 570, 830
RseI CAYNNNNRTG 1 cut(s) 825
SaqAI TTAA 2 cut(s) 29, 111
SatI GCNGC 6 cut(s) 75, 198, 446, 449, 716, 849
Sau3AI GATC 2 cut(s) 550, 619
Sau96I GGNCC 2 cut(s) 784, 797
SfaNI GCATC 3 cut(s) 373, 417, 844
SfcI CTRYAG 2 cut(s) 342, 849
SinI GGWCC 1 cut(s) 797
SmiMI CAYNNNNRTG 1 cut(s) 825
SmlI CTYRAG 1 cut(s) 368
SmoI CTYRAG 1 cut(s) 368
Sse9I AATT 4 cut(s) 140, 229, 749, 792
SsiI CCGC 3 cut(s) 197, 445, 449
SspMI CTAG 1 cut(s) 812
TaaI ACNGT 3 cut(s) 343, 409, 727
TaqI TCGA 1 cut(s) 636
TasI AATT 4 cut(s) 140, 229, 749, 792
TatI WGTACW 3 cut(s) 43, 569, 829
TauI GCSGC 3 cut(s) 200, 448, 451
TfiI GAWTC 2 cut(s) 216, 297
Tru1I TTAA 2 cut(s) 29, 111
Tru9I TTAA 2 cut(s) 29, 111
TscAI CASTG 1 cut(s) 703
TseFI GTSAC 1 cut(s) 584
TseI GCWGC 3 cut(s) 74, 715, 848
Tsp45I GTSAC 1 cut(s) 584
TspDTI ATGAA 3 cut(s) 316, 364, 662
TspGWI ACGGA 2 cut(s) 425, 813
TspRI CASTG 1 cut(s) 703
VpaK11BI GGWCC 1 cut(s) 797
XapI RAATTY 1 cut(s) 140
XceI RCATGY 1 cut(s) 576
XspI CTAG 1 cut(s) 812
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.