FvH4_6g11290

WD40 repeats

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0002511
Physical Location & Seq
Forward (+)
6716602 .. 6725784
9183 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g11290.t2

Sequence Viewer

Length: 3366 bp
ATGTTCGCCAAGCGACTCCTACACAAGGCCGTCAACCACCACCACCATTCTCAGAATATGCAGCAAGGCAGTTTGACGTCAGCAGACTTGGACCTGCGAGTTGCAGTTCACTATGGAATTCCATCTACTTCTTCCATTCTTGCTTTCGACCCCATCCAGCGTCTTCTCGCCATCGGGACACTGGATGGGAGGATTAAAGTAATTGGTGGTGGCGGTATTGAAGGACTTCTTATATCCCCAAAACAGTTGCCTTACAAATACATCGAGTTTCTACAAAATCAGGGTTACTTGGTCAGCATCTTAAATGATAATAGCATTCAGGTTTGGAATCTTGAGGGCAGATGCCTAGTTTGTTCTCTAGAGTGGGAATCAAATATAACTGCTTTTTCTGTAATCCATGGCTCCAACTTAATGTACGTGGGCGATGAGTATGCTGTATTGGCTGTGGTGAAGTATGATATTGAGGAGGAAAAACTTCTGCAGTTGCCGTATCATATTTCTGCGGATTTGTTAAGCGAAGCTGCTGAGTTTCCATTTCCTACCGACCAACCGATAGTTGGACTTCTTCCACAGCCTGGTTCATCTGGAAATAGAGTACTGATTGCATATCAAAATGGGTTGCTTATACTGTGGGATGTTTCTGAGGCTCAGATTGTCTTTCTTGGAGGTGGTAAGGATCTCCAACTAAAGGACGGAGTTGTTAAGCCTACTGATGAAGTCAATATTGATTCTCCTGAAAATACAATAGAACATGAACTGGGAGAGAAAGAAATAAGTGCTCTTTGTTGGGCGTCATCCAATGGGTCCATTTTGGCTGTGGGATATGTAGATGGAGATATTTTGTTCTGGAACACGTCATCTGCTGCTTCCATTAAGGGTCAGCAAGTATCGTCATCATCTAATAATGTTGTTAAGTTACGGCTATCATCAGCAGAAAGAAGACTGCCTGTCATTGTCTTGCAGTGGTGCACATTAAATAAATCCCATAATGATTGTGATGGACAACTATTTATCTATGGTGGCGATGAAATAGGATCAGATGAAGTTCTGACGGTTTTAACTCTTGATTGGTCATCAGGGATGGGGAATTTAAGGTGTGTTGGCCGTACAGACCTTACCCTCACTGGTTCGTTTGCAGACATGATTTTATTAACAAATTCTGCAACAATTGCGGGCAATCATAGAGCTGATGCTTTTGTGTTAACAAACCCTGGGCAATTGCACTTTTATGATGAAACCAGCCTGTCGTCCCTAATATCCCAGCAAGAAAAGAAACCATGTGTCTCTGCTTTGGAGTTTCCAGTGATAATTCCTACTACTAATCCAACCATGACTGCTGCCAAACTTATCAGGACAGCTACTGGGGAGAACTCATTAAAGGATCTATCAGAGATATTCTCAGCTATGAACCTTGGCTCATTACCAACTTCAGTTGATGGTACGAAATGGCCCTTGACTGGAGGTGTGCCCAGTCAGTTGTCTCTTTCAAAGAATAGTGGTATTGAGAGATTATATCTAGCAGGATATTCAGATGGATCTGTTCGGATATGGAATGCCACATATCCGCTCTTATCTTTTGTCTGTGTTTTAGAAGGCGAGGTGCAAGGTATAAAAGTGGCTGGTTTAAATTCTCCAGTATCAAGAATGGATTTCTGCATCTTCACTTTGAACTTGGCTGTTGGCAGTGAATCTGGTTTGGTTCGTATTTACAACCTCAAAGGATGTTCAGATGGGATAAAATTCCTCTTTGTAACCGAAACCAAATGTGAAGCCCACAGTTTGTCTCAAGTGAAAGGACCTCAATGCAGAGCTGTTTTCAGTCTTACTAATTCCCGAGTTCAAGCGCTACAGTTTGTCAAGCATGGAGGTAAACTTGCAGTGGGATTTGAATGTGGTCATGTTGCAATGCTGGACACAAGTTCCTTATCCATATTGTTCTTCATAAAAGATGCATCTTTCTCTAGCTCCCCGGTCATTTCAATGACTTGGAAAGAAATTACAAATCCTCAAGGCCTCTTGAAGAGTACCAAACTCTCAGAAACAAAATCACCCGTTCACCCTGCAGAGGAAGTACTGTTCATCTTAACCAAAGATGCAAATATACATTTGATTTGTGGAAACACTGGTAATGTGATCATCCCCCGGCCATGGCAATTGAAAAAGGAAGCGATTGCAATTTCAATGTATGTTATAGATGGAAGAATTTCAGCCTCTAAAGTATCTGATACAAATCCGCCGGAAGAGACGTCAAAGGATAATTCAACCAAGAACGAGTCTATGGCAGGCAGTTCTCCAATTCCTATAAATTCACTTGATGTGGACCAGGACAATAATTCAGAAAATGCATACTCTGAAGAAAGATTGTTGAACTCGCTGATTTTGCTTTGCTGTGTGGATTCAGTGCGCTTGTACTCCACGAAATCTGTGATTCAGGGAAACAATGAACCCATACGAAAGGTGAAACATGCAAGACCTTGCATTTGGGCAGCAACTCTGAAGAATGTTGAAAAAACTTGGGGATTGACTTTACTGTTTCAGACTGGAGAGATTGAAATTAGATCTATTCCTGATTTAGAATTGGTGAAAGAAAGCTCCTTGATGTCAATTCTAAGGTGGAATTGTAAGGCAAACATGGATAAGACAATGAGTTTCGATGATGCACATATCACACTGGCAAATGGGTATGAGACAGTATTCATCTCTCTGTTAACTGCTGAAAATGATTTCAGGATTCCAGAGTCTTTGCCTTGTCTCCATGATGCAGTTCTTGCATCTGCTGCAGATGCGGCCTTAAGTGTGTCTTTGAATCAGAAGAAGAAACAGAGTACTGGCCCAGCGATATTAGGTATTGTCAAAGGCTTGAAAGGAGGAAAAATGGTTCAGAGTGGAGATTCTAGTCATTCTACTGCAACCCCTAAATCCAGGTTTGATCAATTAGAAGGGATGTTCTGGAAGTCCCAACAGTTGGACTTGTTCCCAGGTTTGGATCATCAAGAAACTTTGGAGCTTAATATAGATGACATTGAAATTGATGAACCTCTACATGTAGCATCTACTTCAACATCCCATGATGTTGATAATAAAAAGAGAGAAGGGGACTCAGAAAGGGATAGATTATTTCAAGGTGGGACTGGTGATACAAAGCCCAGAGTTAGGACTGCTGAAGAAATTAAAGCTAAATATAGAAAAACTGAGGATGCTTCTTCGGTGGCTTCTGAAGCAAGGAATAAGCTCATGGAGCGGGGGCAAAAACTTGAGAAACTCAGCAGGCGCACTGAAGATCTACAGAATGGAGCTGAAGATTTTGCATCAATGACGAAGGAGCTAGTCAAGACACTAGAAGCACGAAAGTGGTGGCATATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000137 GO:0000139 GO:0000902 GO:0000904 GO:0002791 GO:0003674 GO:0005096 GO:0005198 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005794 GO:0005795 GO:0005802 GO:0005856 GO:0005886 GO:0005938 GO:0006810 GO:0006892 GO:0006893 GO:0006996 GO:0007010 GO:0007275 GO:0007399 GO:0007409 GO:0008047 GO:0008150 GO:0009653 GO:0009987 GO:0010008 GO:0012505 GO:0015629 GO:0016020 GO:0016043 GO:0016192 GO:0017016 GO:0017137 GO:0017157 GO:0019899 GO:0019900 GO:0019901 GO:0022008 GO:0022607 GO:0030029 GO:0030030 GO:0030036 GO:0030154 GO:0030182 GO:0030234 GO:0030695 GO:0030863 GO:0030864 GO:0030865 GO:0030866 GO:0031090 GO:0031175 GO:0031267 GO:0031410 GO:0031901 GO:0031982 GO:0031984 GO:0031985 GO:0032501 GO:0032502 GO:0032588 GO:0032879 GO:0032880 GO:0032989 GO:0032990 GO:0043085 GO:0043087 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043547 GO:0043933 GO:0044085 GO:0044093 GO:0044422 GO:0044424 GO:0044430 GO:0044431 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0048193 GO:0048468 GO:0048666 GO:0048667 GO:0048699 GO:0048731 GO:0048812 GO:0048856 GO:0048858 GO:0048869 GO:0050708 GO:0050789 GO:0050790 GO:0050794 GO:0051020 GO:0051046 GO:0051049 GO:0051179 GO:0051223 GO:0051234 GO:0051336 GO:0051345 GO:0060589 GO:0060627 GO:0061564 GO:0065003 GO:0065007 GO:0065009 GO:0070201 GO:0071840 GO:0071944 GO:0090087 GO:0097708 GO:0098588 GO:0098772 GO:0098791 GO:0098805 GO:0098876 GO:0099568 GO:0120036 GO:0120039 GO:1903530
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ANAPC4_WD40 Synaptobrevin

Protein Analysis

1122

Amino Acids

122.77

Weight (kDa)

5.52

Isoelectric Point (pI)

40.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Synaptobrevin PF00957 1073 - 1116 7.7e-06 Synaptobrevin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 80, 2249
Acc36I ACCTGC 1 cut(s) 102
AccB7I CCANNNNNTGG 2 cut(s) 575, 2965
AccBSI CCGCTC 2 cut(s) 1567, 3241
AciI CCGC 7 cut(s) 213, 503, 1172, 1565, 2234, 2786, 3241
AclWI GGATC 5 cut(s) 684, 1042, 1389, 1543, 2994
AcoI YGGCCR 2 cut(s) 1102, 2144
AcsI RAATTY 7 cut(s) 117, 1087, 1156, 1627, 1739, 2202, 2305
AcuI CTGAAG 7 cut(s) 1413, 2373, 2516, 3183, 3237, 3297, 3318
AcyI GRCGYC 3 cut(s) 77, 791, 2246
AfaI GTAC 8 cut(s) 416, 597, 1108, 1441, 2026, 2073, 2411, 2827
AfeI AGCGCT 1 cut(s) 1845
AflII CTTAAG 1 cut(s) 2791
AflIII ACRYGT 2 cut(s) 852, 3043
AhdI GACNNNNNGTC 1 cut(s) 947
AjiI CACGTC 1 cut(s) 855
AjnI CCWGG 5 cut(s) 574, 1210, 2322, 2921, 2977
AleI CACNNNNGTG 1 cut(s) 3349
AloI GAACNNNNNNTCC 4 cut(s) 2060, 2092, 2862, 2894
Alw21I GWGCWC 2 cut(s) 781, 971
Alw26I GTCTC 6 cut(s) 1288, 1485, 1788, 2237, 2681, 2756
Alw44I GTGCAC 1 cut(s) 967
AlwI GGATC 5 cut(s) 684, 1042, 1389, 1543, 2994
AlwNI CAGNNNCTG 1 cut(s) 1361
Ama87I CYCGRG 1 cut(s) 1833
Aor51HI AGCGCT 1 cut(s) 1845
AoxI GGCC 7 cut(s) 27, 1102, 1448, 2011, 2144, 2787, 2830
ApaLI GTGCAC 1 cut(s) 967
ApeKI GCWGC 6 cut(s) 61, 521, 863, 1337, 2486, 2777
ApoI RAATTY 7 cut(s) 117, 1087, 1156, 1627, 1739, 2202, 2305
ArsI GACNNNNNNTTYG 2 cut(s) 2463, 2495
Asp700I GAANNNNTTC 3 cut(s) 225, 474, 2203
AspLEI GCGC 3 cut(s) 1846, 2406, 3273
AspS9I GGNCC 6 cut(s) 91, 804, 1449, 1796, 2320, 2831
AsuC2I CCSGG 2 cut(s) 1970, 2143
AsuHPI GGTGA 6 cut(s) 460, 2040, 2048, 2470, 2593, 3146
AvaI CYCGRG 1 cut(s) 1833
AvaII GGWCC 4 cut(s) 91, 804, 1796, 2320
BaeGI GKGCMC 2 cut(s) 971, 1470
BbsI GAAGAC 2 cut(s) 155, 946
Bbv12I GWGCWC 2 cut(s) 781, 971
BbvI GCAGC 6 cut(s) 73, 508, 850, 1324, 2498, 2764
BceAI ACGGC 4 cut(s) 14, 472, 935, 1089
BcgI CGANNNNNNTGC 2 cut(s) 413, 447
BciT130I CCWGG 5 cut(s) 576, 1212, 2324, 2923, 2979
BclI TGATCA 2 cut(s) 2133, 2929
BcnI CCSGG 2 cut(s) 1970, 2143
BcoDI GTCTC 6 cut(s) 1288, 1485, 1788, 2237, 2681, 2756
BfaI CTAG 7 cut(s) 347, 359, 1517, 1962, 2895, 3326, 3338
BfmI CTRYAG 5 cut(s) 479, 1847, 2061, 2778, 3284
BfoI RGCGCY 1 cut(s) 1847
BfrI CTTAAG 1 cut(s) 2791
BfuAI ACCTGC 1 cut(s) 102
BglII AGATCT 2 cut(s) 2558, 3280
BisI GCNGC 7 cut(s) 62, 522, 864, 1338, 2487, 2778, 2787
BlsI GCNGC 7 cut(s) 63, 523, 865, 1339, 2488, 2779, 2788
BmcAI AGTACT 3 cut(s) 597, 2073, 2827
Bme1390I CCNGG 7 cut(s) 576, 1212, 1970, 2143, 2324, 2923, 2979
Bme18I GGWCC 4 cut(s) 91, 804, 1796, 2320
BmeRI GACNNNNNGTC 1 cut(s) 947
BmeT110I CYCGRG 1 cut(s) 1833
BmgBI CACGTC 1 cut(s) 855
BmgT120I GGNCC 6 cut(s) 91, 804, 1449, 1796, 2320, 2831
BmiI GGNNCC 2 cut(s) 403, 805
BmrFI CCNGG 7 cut(s) 576, 1212, 1970, 2143, 2324, 2923, 2979
BmrI ACTGGG 3 cut(s) 767, 1371, 1464
BmuI ACTGGG 3 cut(s) 767, 1371, 1464
BpiI GAAGAC 2 cut(s) 155, 946
BplI GAGNNNNNCTC 2 cut(s) 1382, 1414
BpmI CTGGAG 3 cut(s) 1479, 1617, 2562
BpuEI CTTGAG 4 cut(s) 353, 1770, 1992, 3275
BpuMI CCSGG 2 cut(s) 1970, 2143
BsaAI YACGTR 1 cut(s) 418
BsaBI GATNNNNATC 1 cut(s) 2229
BsaHI GRCGYC 3 cut(s) 77, 791, 2246
BsaJI CCNNGG 8 cut(s) 397, 1210, 1211, 1411, 1968, 2141, 2147, 2977
Bse3DI GCAATG 1 cut(s) 1911
Bse8I GATNNNNATC 1 cut(s) 2229
BseBI CCWGG 5 cut(s) 576, 1212, 2324, 2923, 2979
BseDI CCNNGG 8 cut(s) 397, 1210, 1211, 1411, 1968, 2141, 2147, 2977
BseJI GATNNNNATC 1 cut(s) 2229
BseMI GCAATG 1 cut(s) 1911
BseMII CTCAG 9 cut(s) 65, 516, 633, 662, 1413, 2049, 3114, 3183, 3277
BseRI GAGGAG 1 cut(s) 479
BseSI GKGCMC 2 cut(s) 971, 1470
BseXI GCAGC 6 cut(s) 73, 508, 850, 1324, 2498, 2764
BseYI CCCAGC 2 cut(s) 1260, 2833
BshFI GGCC 7 cut(s) 29, 1104, 1450, 2013, 2146, 2789, 2832
BsiHKAI GWGCWC 2 cut(s) 781, 971
BsiHKCI CYCGRG 1 cut(s) 1833
BsiSI CCGG 3 cut(s) 1970, 2143, 2237
BslFI GGGAC 5 cut(s) 190, 1234, 2941, 3110, 3142
BsmAI GTCTC 6 cut(s) 1288, 1485, 1788, 2237, 2681, 2756
BsmBI CGTCTC 1 cut(s) 2237
BsmFI GGGAC 5 cut(s) 190, 1234, 2941, 3110, 3142
BsmI GAATGC 2 cut(s) 315, 1558
BsnI GGCC 7 cut(s) 29, 1104, 1450, 2013, 2146, 2789, 2832
BsoBI CYCGRG 1 cut(s) 1833
Bsp1286I GDGCHC 3 cut(s) 781, 971, 1470
Bsp143I GATC 9 cut(s) 676, 1034, 1381, 1535, 2133, 2558, 2929, 2986, 3280
Bsp19I CCATGG 2 cut(s) 397, 2147
BspACI CCGC 7 cut(s) 213, 503, 1172, 1565, 2234, 2786, 3241
BspANI GGCC 7 cut(s) 29, 1104, 1450, 2013, 2146, 2789, 2832
BspCNI CTCAG 9 cut(s) 64, 517, 634, 661, 1412, 2048, 3113, 3184, 3276
BspLI GGNNCC 2 cut(s) 403, 805
BspMAI CTGCAG 3 cut(s) 483, 2065, 2782
BspMI ACCTGC 1 cut(s) 102
BspPI GGATC 5 cut(s) 684, 1042, 1389, 1543, 2994
BspTI CTTAAG 1 cut(s) 2791
BsrBI CCGCTC 2 cut(s) 1567, 3241
BsrDI GCAATG 1 cut(s) 1911
BssECI CCNNGG 8 cut(s) 397, 1210, 1211, 1411, 1968, 2141, 2147, 2977
BssMI GATC 9 cut(s) 676, 1034, 1381, 1535, 2133, 2558, 2929, 2986, 3280
BssNI GRCGYC 3 cut(s) 77, 791, 2246
BssT1I CCWWGG 3 cut(s) 397, 1411, 2147
Bst2UI CCWGG 5 cut(s) 576, 1212, 2324, 2923, 2979
Bst4CI ACNGT 9 cut(s) 246, 630, 1054, 1778, 1851, 2076, 2532, 2692, 2964
Bst6I CTCTTC 2 cut(s) 2015, 2235
BstACI GRCGYC 3 cut(s) 77, 791, 2246
BstAFI CTTAAG 1 cut(s) 2791
BstAPI GCANNNNNTGC 3 cut(s) 1169, 2768, 2777
BstBAI YACGTR 1 cut(s) 418
BstC8I GCNNGC 3 cut(s) 1174, 2284, 3269
BstDSI CCRYGG 2 cut(s) 397, 2147
BstENI CCTNNNNNAGG 1 cut(s) 23
BstH2I RGCGCY 1 cut(s) 1847
BstHHI GCGC 3 cut(s) 1846, 2406, 3273
BstKTI GATC 9 cut(s) 679, 1037, 1384, 1538, 2136, 2561, 2932, 2989, 3283
BstMAI GTCTC 6 cut(s) 1288, 1485, 1788, 2237, 2681, 2756
BstMBI GATC 9 cut(s) 676, 1034, 1381, 1535, 2133, 2558, 2929, 2986, 3280
BstMWI GCNNNNNNNGC 9 cut(s) 440, 1169, 2380, 2768, 2777, 2783, 2786, 3218, 3238
BstNI CCWGG 5 cut(s) 576, 1212, 2324, 2923, 2979
BstNSI RCATGY 2 cut(s) 2468, 3047
BstSCI CCNGG 7 cut(s) 574, 1210, 1968, 2141, 2322, 2921, 2977
BstSFI CTRYAG 5 cut(s) 479, 1847, 2061, 2778, 3284
BstSLI GKGCMC 2 cut(s) 971, 1470
BstV1I GCAGC 6 cut(s) 73, 508, 850, 1324, 2498, 2764
BstV2I GAAGAC 2 cut(s) 155, 946
BstX2I RGATCY 5 cut(s) 676, 1381, 1535, 2558, 3280
BstYI RGATCY 5 cut(s) 676, 1381, 1535, 2558, 3280
BsuRI GGCC 7 cut(s) 29, 1104, 1450, 2013, 2146, 2789, 2832
BtgI CCRYGG 2 cut(s) 397, 2147
BtgZI GCGATG 2 cut(s) 438, 1038
BtrI CACGTC 1 cut(s) 855
BtsI GCAGTG 3 cut(s) 968, 1690, 1884
BveI ACCTGC 1 cut(s) 102
Cac8I GCNNGC 3 cut(s) 1174, 2284, 3269
CaiI CAGNNNCTG 1 cut(s) 1361
CfoI GCGC 3 cut(s) 1846, 2406, 3273
Cfr13I GGNCC 6 cut(s) 91, 804, 1449, 1796, 2320, 2831
CseI GACGC 2 cut(s) 149, 780
Csp6I GTAC 8 cut(s) 415, 596, 1107, 1440, 2025, 2072, 2410, 2826
CviQI GTAC 8 cut(s) 415, 596, 1107, 1440, 2025, 2072, 2410, 2826
DpnI GATC 9 cut(s) 678, 1036, 1383, 1537, 2135, 2560, 2931, 2988, 3282
DpnII GATC 9 cut(s) 676, 1034, 1381, 1535, 2133, 2558, 2929, 2986, 3280
DraI TTTAAA 1 cut(s) 1626
DriI GACNNNNNGTC 1 cut(s) 947
EaeI YGGCCR 2 cut(s) 1102, 2144
Eam1104I CTCTTC 2 cut(s) 2015, 2235
Eam1105I GACNNNNNGTC 1 cut(s) 947
EarI CTCTTC 2 cut(s) 2015, 2235
EciI GGCGGA 1 cut(s) 2223
Eco130I CCWWGG 3 cut(s) 397, 1411, 2147
Eco147I AGGCCT 1 cut(s) 2013
Eco47I GGWCC 4 cut(s) 91, 804, 1796, 2320
Eco47III AGCGCT 1 cut(s) 1845
Eco57I CTGAAG 7 cut(s) 1413, 2373, 2516, 3183, 3237, 3297, 3318
Eco88I CYCGRG 1 cut(s) 1833
EcoNI CCTNNNNNAGG 1 cut(s) 23
EcoO109I RGGNCCY 1 cut(s) 1796
EcoRI GAATTC 1 cut(s) 117
EcoRII CCWGG 5 cut(s) 574, 1210, 2322, 2921, 2977
EcoT14I CCWWGG 3 cut(s) 397, 1411, 2147
EcoT22I ATGCAT 2 cut(s) 1954, 2347
ErhI CCWWGG 3 cut(s) 397, 1411, 2147
Esp3I CGTCTC 1 cut(s) 2237
FalI AAGNNNNNCTT 4 cut(s) 213, 245, 2785, 2817
FaqI GGGAC 5 cut(s) 190, 1234, 2941, 3110, 3142
FauI CCCGC 2 cut(s) 1165, 3234
FbaI TGATCA 2 cut(s) 2133, 2929
Fnu4HI GCNGC 7 cut(s) 62, 522, 864, 1338, 2487, 2778, 2787
Fsp4HI GCNGC 7 cut(s) 62, 522, 864, 1338, 2487, 2778, 2787
FspBI CTAG 7 cut(s) 347, 359, 1517, 1962, 2895, 3326, 3338
GlaI GCGC 3 cut(s) 1845, 2405, 3272
GluI GCNGC 7 cut(s) 62, 522, 864, 1338, 2487, 2778, 2787
GsaI CCCAGC 2 cut(s) 1264, 2837
GsuI CTGGAG 3 cut(s) 1479, 1617, 2562
HaeII RGCGCY 1 cut(s) 1847
HaeIII GGCC 7 cut(s) 29, 1104, 1450, 2013, 2146, 2789, 2832
HapII CCGG 3 cut(s) 1970, 2143, 2237
HgaI GACGC 2 cut(s) 149, 780
HhaI GCGC 3 cut(s) 1846, 2406, 3273
Hin1I GRCGYC 3 cut(s) 77, 791, 2246
Hin6I GCGC 3 cut(s) 1844, 2404, 3271
HinP1I GCGC 3 cut(s) 1844, 2404, 3271
HincII GTYRAC 3 cut(s) 34, 1203, 2709
HindII GTYRAC 3 cut(s) 34, 1203, 2709
HpaI GTTAAC 2 cut(s) 1203, 2709
HpaII CCGG 3 cut(s) 1970, 2143, 2237
HphI GGTGA 6 cut(s) 460, 2040, 2048, 2470, 2593, 3146
Hpy166II GTNNAC 8 cut(s) 34, 109, 969, 1203, 1871, 2056, 2320, 2709
Hpy8I GTNNAC 8 cut(s) 34, 109, 969, 1203, 1871, 2056, 2320, 2709
HpyAV CCTTC 5 cut(s) 215, 1586, 2933, 3086, 3313
HpyCH4III ACNGT 9 cut(s) 246, 630, 1054, 1778, 1851, 2076, 2532, 2692, 2964
HpyCH4IV ACGT 4 cut(s) 77, 417, 854, 2246
HpyF10VI GCNNNNNNNGC 9 cut(s) 440, 1169, 2380, 2768, 2777, 2783, 2786, 3218, 3238
HpySE526I ACGT 4 cut(s) 77, 417, 854, 2246
Hsp92I GRCGYC 3 cut(s) 77, 791, 2246
HspAI GCGC 3 cut(s) 1844, 2404, 3271
Ksp22I TGATCA 2 cut(s) 2133, 2929
KspAI GTTAAC 2 cut(s) 1203, 2709
Kzo9I GATC 9 cut(s) 676, 1034, 1381, 1535, 2133, 2558, 2929, 2986, 3280
LmnI GCTCC 7 cut(s) 407, 1970, 2597, 3004, 3238, 3293, 3322
Lsp1109I GCAGC 6 cut(s) 73, 508, 850, 1324, 2498, 2764
MaeI CTAG 7 cut(s) 347, 359, 1517, 1962, 2895, 3326, 3338
MaeII ACGT 4 cut(s) 77, 417, 854, 2246
MaeIII GTNAC 3 cut(s) 284, 915, 1750
MalI GATC 9 cut(s) 678, 1036, 1383, 1537, 2135, 2560, 2931, 2988, 3282
MbiI CCGCTC 2 cut(s) 1567, 3241
MboI GATC 9 cut(s) 676, 1034, 1381, 1535, 2133, 2558, 2929, 2986, 3280
MfeI CAATTG 3 cut(s) 1167, 1217, 2153
MflI RGATCY 5 cut(s) 676, 1381, 1535, 2558, 3280
MhlI GDGCHC 3 cut(s) 781, 971, 1470
MlyI GAGTC 4 cut(s) 9, 2282, 2747, 3092
MmeI TCCRAC 5 cut(s) 429, 538, 706, 1349, 2946
Mph1103I ATGCAT 2 cut(s) 1954, 2347
MroXI GAANNNNTTC 3 cut(s) 225, 474, 2203
MslI CAYNNNNRTG 3 cut(s) 1227, 1979, 3349
MspCI CTTAAG 1 cut(s) 2791
MspI CCGG 3 cut(s) 1970, 2143, 2237
MspR9I CCNGG 7 cut(s) 576, 1212, 1970, 2143, 2324, 2923, 2979
MunI CAATTG 3 cut(s) 1167, 1217, 2153
Mva1269I GAATGC 2 cut(s) 315, 1558
MvaI CCWGG 5 cut(s) 576, 1212, 2324, 2923, 2979
MwoI GCNNNNNNNGC 9 cut(s) 440, 1169, 2380, 2768, 2777, 2783, 2786, 3218, 3238
NciI CCSGG 2 cut(s) 1970, 2143
NcoI CCATGG 2 cut(s) 397, 2147
NdeII GATC 9 cut(s) 676, 1034, 1381, 1535, 2133, 2558, 2929, 2986, 3280
NlaIV GGNNCC 2 cut(s) 403, 805
NsiI ATGCAT 2 cut(s) 1954, 2347
NspI RCATGY 2 cut(s) 2468, 3047
OliI CACNNNNGTG 1 cut(s) 3349
PasI CCCWGGG 1 cut(s) 1211
PceI AGGCCT 1 cut(s) 2013
PciI ACATGT 1 cut(s) 3043
PctI GAATGC 2 cut(s) 315, 1558
PdmI GAANNNNTTC 3 cut(s) 225, 474, 2203
PfeI GAWTC 9 cut(s) 328, 368, 728, 1688, 2396, 2428, 2731, 2806, 2891
PflMI CCANNNNNTGG 2 cut(s) 575, 2965
PkrI GCNGC 7 cut(s) 63, 523, 865, 1339, 2488, 2779, 2788
PleI GAGTC 4 cut(s) 9, 2281, 2746, 3092
PpsI GAGTC 4 cut(s) 9, 2281, 2746, 3092
Ppu21I YACGTR 1 cut(s) 418
PpuMI RGGWCCY 1 cut(s) 1796
PscI ACATGT 1 cut(s) 3043
Psp5II RGGWCCY 1 cut(s) 1796
Psp6I CCWGG 5 cut(s) 574, 1210, 2322, 2921, 2977
PspFI CCCAGC 2 cut(s) 1260, 2833
PspGI CCWGG 5 cut(s) 574, 1210, 2322, 2921, 2977
PspN4I GGNNCC 2 cut(s) 403, 805
PspPI GGNCC 6 cut(s) 91, 804, 1449, 1796, 2320, 2831
PspPPI RGGWCCY 1 cut(s) 1796
PstI CTGCAG 3 cut(s) 483, 2065, 2782
PstNI CAGNNNCTG 1 cut(s) 1361
PsuI RGATCY 5 cut(s) 676, 1381, 1535, 2558, 3280
RsaI GTAC 8 cut(s) 416, 597, 1108, 1441, 2026, 2073, 2411, 2827
RsaNI GTAC 8 cut(s) 415, 596, 1107, 1440, 2025, 2072, 2410, 2826
RseI CAYNNNNRTG 3 cut(s) 1227, 1979, 3349
SatI GCNGC 7 cut(s) 62, 522, 864, 1338, 2487, 2778, 2787
Sau3AI GATC 9 cut(s) 676, 1034, 1381, 1535, 2133, 2558, 2929, 2986, 3280
Sau96I GGNCC 6 cut(s) 91, 804, 1449, 1796, 2320, 2831
ScaI AGTACT 3 cut(s) 597, 2073, 2827
SchI GAGTC 4 cut(s) 9, 2282, 2747, 3092
ScrFI CCNGG 7 cut(s) 576, 1212, 1970, 2143, 2324, 2923, 2979
SduI GDGCHC 3 cut(s) 781, 971, 1470
SfcI CTRYAG 5 cut(s) 479, 1847, 2061, 2778, 3284
SinI GGWCC 4 cut(s) 91, 804, 1796, 2320
SmiMI CAYNNNNRTG 3 cut(s) 1227, 1979, 3349
SmlI CTYRAG 5 cut(s) 332, 1785, 2007, 2791, 3254
SmoI CTYRAG 5 cut(s) 332, 1785, 2007, 2791, 3254
SseBI AGGCCT 1 cut(s) 2013
SsiI CCGC 7 cut(s) 213, 503, 1172, 1565, 2234, 2786, 3241
SspI AATATT 1 cut(s) 724
SspMI CTAG 7 cut(s) 347, 359, 1517, 1962, 2895, 3326, 3338
StuI AGGCCT 1 cut(s) 2013
StyD4I CCNGG 7 cut(s) 574, 1210, 1968, 2141, 2322, 2921, 2977
StyI CCWWGG 3 cut(s) 397, 1411, 2147
TaaI ACNGT 9 cut(s) 246, 630, 1054, 1778, 1851, 2076, 2532, 2692, 2964
TaiI ACGT 4 cut(s) 80, 420, 857, 2249
TaqI TCGA 3 cut(s) 147, 264, 2652
TatI WGTACW 4 cut(s) 595, 2071, 2409, 2825
TauI GCSGC 1 cut(s) 2789
TfiI GAWTC 9 cut(s) 328, 368, 728, 1688, 2396, 2428, 2731, 2806, 2891
TseI GCWGC 6 cut(s) 61, 521, 863, 1337, 2486, 2777
TspGWI ACGGA 1 cut(s) 708
Van91I CCANNNNNTGG 2 cut(s) 575, 2965
Vha464I CTTAAG 1 cut(s) 2791
VneI GTGCAC 1 cut(s) 967
VpaK11BI GGWCC 4 cut(s) 91, 804, 1796, 2320
XagI CCTNNNNNAGG 1 cut(s) 23
XapI RAATTY 7 cut(s) 117, 1087, 1156, 1627, 1739, 2202, 2305
XbaI TCTAGA 1 cut(s) 358
XceI RCATGY 2 cut(s) 2468, 3047
XcmI CCANNNNNNNNNTGG 3 cut(s) 178, 554, 814
XmnI GAANNNNTTC 3 cut(s) 225, 474, 2203
XspI CTAG 7 cut(s) 347, 359, 1517, 1962, 2895, 3326, 3338
ZraI GACGTC 2 cut(s) 78, 2247
ZrmI AGTACT 3 cut(s) 597, 2073, 2827
Zsp2I ATGCAT 2 cut(s) 1954, 2347
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.