Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0002511

Physical Location & Seq

Genomic Coordinates Reverse (-)

59957029 .. 59965318

Gene Structure 8290 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG364900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3711 bp

ATGTTGGCTAAACTCTTCAAAAGACCCTCACAAAAACAACACCATCCTCAGGCAAGGGTGTCACAAGCTGATTTCGATCCAAGAATTGTTTTTCACTATGGGATTCCATCTACTGCATCGATTCTCGCACTTGATCGCACGCAGAGCTTGCTGGCAATTGGAACCCTGGATGGGAGGATAAAAGTGATCGGTGGCGATAATATTGAAGGGCTTCTGATATCTCCTGAGCCATTGGCCTTTAAATACTTGGAGTTCTTAGAAAATCAAGGTTTTTTAGCTAGTGTCTCAAGTGAAAATGAAATTCAGGTTTGGGATTTGGAACAGAAGCAAATAGCTGGTTCTTTACAGTGGGAATGCAATATAACTGCCTTCTCTGTTATTTATGGCACCAATTACATGTATATTGGAAGCGAATATGCAATGGTGTCTATGGTGAAGTATGATGCTGAAGATCGAAAAATCAATTTACTGCCATATTATATTACTGCAAACTTCATAGCTGAAGCAGCTGGAATGTCATTGCCTGATAATCTTTCTGTTGTTGGAGTTCTCCATCAACCTAGTTCTCAGGGAAACAGACTGCTGATTGCATATGAGAATGGTCTGATTGTTCTCTGGGATGCTTTAGAAGATCAAGTTGTGCTTGTAAGAGGTTCCAAGGACCTGCAAGTGAAGGAAGAAACAGTCCATAATTCTTTTGAAGGCACAAGAACTGAGCTGACTGATGCTACATCAGACAGCAAACAGGTGGAGAAAGAGATAAGCTCTCTTTGTTGGGTATGCGATGATGGGTCAAGTCTTGCTGTTGGCTATGTAGATGGTGATATAATGTTTTGGGATATATCAACTGCTGAGTCTACCAAGGATCATAGATCTAAAAAGTTAGCTAACAATGTTGCAAAGCTAGAGTTATCATCAGATGACAAGAGACTCCCTGTCATAGTTTTACACTGGTCTGCAAATAGGTTAAGTCATCATCCTAGGGGCCAACTCTTTGTTTATGGAGGTGAAGGAATTGGGTCTGAAGAAGTTCTCACGGTTCTGAGCGTGGATTGGTCTTCAGGAATAGAAAGTCTGAAATGCATAGGTCGTGTGGACCTTACACTTGTTGGTTCATTTTCAGATATGATTTTACTTCCAGCTGCTGGTGCAATGGAGAACGGTGACACATTGCTATTCACTTTGACAAATCAGGGACAACTGCATGTCTATGACAAGGCTTGCTGGTCTGCCTTAATATCTCACCAAAAGAAAAGGACTGATGGGACTGCAGTGCAGTATCCTATGTTTATACCTACTACTGAACCGTGTATGACAGTGGCAAAGCTTGCTTTGGTGGATAGAGATGGGAAATACTCCTCAGCTTTGTCCAAGGAAGTTTCAGTTGACAAGTCTACTGCGAAACACACTTTGAAGAAGGGGGGTGCAAAGTGGCCTTTGACTGGTGGTGTTCCCAGCCAACTTTCTGATGCTGAAAATTTTCATGTCGAGAGACTATATGTAGCAGGATATCAAGATGGATCTGTTCGAATATGGGATGCCACCTATCCAACTCCGTCGCTTATATATGCTATAGGTCCTGAGGTAAAAGGCATCAGATCTACAGGTGCAAATGGAACAGTCTCAGCATTGGAATTTTGTTCTCTTACTTTAAAATTAGCTATTGGTGATGTGTGTGGTCTGGTTCGTCTATATAAACTAATTGGGAGTTCAGACGAGACAGAATTGCACTTTGTGACAAAAACAGAGAAGGAAGTTTATACTTCACAACAAGGTAATGGGCCTCGGTGCACAGCTGTGTTTTCTATTCTTGATTCTCCTATATCCATACTACAATATGCAAATTTTGGAGCAAGACTTACTGTGGGATATGAATGTGGCCGGGTTGCAATGCTTGATATTAGTACATCGTCAGTTTTGTTTCTTACAGACAGTGTCTCCAACTCAAGTTCCCCAGTCATCTGTCTGTCTGTGAAATCATTATCAGATACTAATAGCTTATCACAGAGCCCAAAGGGCTCTGAATCCAAGAATTCGACTGATCCTCAAAATGGAATGAATCCAAAGGATTCTGAATCCAAAACTTCAAGTGATTCTGGAAATGGGTTGGCAATCCCAAAGGACTCTGAATCCAAGAATGTGGCTGACCCTGAACATGGAATGAGTGAAAAAGATCCTGAATCCAAGACTTTGATTGCCTCTGGAAATGGGTTGGCAATCCCAGAGGACTCTGAATCCAAGAATGTGGCTGATCCTGAACCTGGAATGAGTGTAAAAGATCCTGAATCCCAAACATTGAGTTATTCTGGAAATGAGTTGGCAATCCCAAAAGACTCTGAATCCAAGAATGAGACTGAACCTGAACATGGAAAGAGTTTAAAAGATCCTGAATCCAAGACTTTGAGTGATTCTGAAAATGGGTTGGCGTTCATTATGACCAGAAATGCACATTTTGTTATTTTAGATAGTGCCACTGGCAATATGATCAGGTCTTGGCCCATGCATCCAAAAATGGATTCTACTGCGATTTCGATGTACATTATAGAGGATGGTGATGTTTTATTTGATTTGTCGAGTGCAAAAAAGGATCCTTTAGACTTACCTCAGAAAGGCGTAGCTAAACATGATGACGTACCACCTAATGCTGACTCTGGAGGGACACAGCTTGTAGTTGACCAGGATACCTCCACCAAAACTGCATATTTTTTGCAGAGATCGGTGAACATGTGTGTTTTACTTTGTTGTGACTACACATTGCACTTATGTTCATTGAAGTCTCTGCTTGAGGGTGACAGTAACTGCATTCTGAAGGTGAATCTTGTAAAACCGTGTTGTTGGACTACAATCTTCAAAAAAGATGGAAAAGACAGTGGATTGGTTATACTAAATCAGACAGGAGTCTTTGAGATCAGGTCTTTTCCAAATCTTGAAGTGGTCAGAGATATATCATTAATGACGATTCTAAGATGGAACTTCGTGATCAACATGGATAAGACATTCTGTTCCTCTGATCGTGGGCAAATGATTCTGGTACATGGGTGTGAATTAGCTTTTGTATCTCTTTTGGCCTACGAAGATGACTTCAGGATTTTGGAGTCCTTCCCTTGTCTTCATGATAAAGTGCTTGCAACTGCTACAGATGTCATTGCTGATTTATCTCAAAGACAGAAACAGAGTGCTGCCCATAGGATTTTAGGAGGTATCATTAAGGGCTTAAAAACTGGTAAAGAGGATCAAAACATGGACCCGACTGGAAATCATGAAAAATATTGTGCGAATTTGGAGAGCTTATTTTCAAATCCCCCATTCTTAAAACCTTCCACAGATGTGAAGGATGGCCAAGAACCCGTGGTGCTTAACCTAGATGATATTGTAATTGATGGCCCTATTACTGTCTTGCCTAAAGATCCAAACAAGAAGAATGAAAAGAAAGACAAGCAGGGATCAGAGAAGAAAAAGTTATTTGAAGGCGCAACTAGTGATACAAAGCCAAAAATGAGGACAGCTGCTGAAATCAAGGCTAAATATAGAGAAACTGGGGATGTCTCTGCAGCAGCTGCACGTGCAAGAGATATGCTTGCCGAACGTGGGGAAAAACTTGAGAAACTCAGAGAAAACACAGAAGAACTATCGAGTGGAGCTCAAGACTTCGCATCGATGGCAAAGGAACTCGCCAAGAGAATGGAGAATCGTAAATGGTGGCACATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0002791 GO:0002792 GO:0002793 GO:0003674 GO:0005096 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0008047 GO:0008150 GO:0010646 GO:0010648 GO:0010817 GO:0016020 GO:0017016 GO:0017137 GO:0017157 GO:0019899 GO:0019905 GO:0023051 GO:0023057 GO:0030234 GO:0030695 GO:0031267 GO:0032879 GO:0032880 GO:0033500 GO:0042592 GO:0042593 GO:0043085 GO:0043087 GO:0043547 GO:0044093 GO:0044424 GO:0044464 GO:0046676 GO:0046883 GO:0046888 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048878 GO:0050708 GO:0050709 GO:0050714 GO:0050789 GO:0050790 GO:0050794 GO:0050796 GO:0051020 GO:0051046 GO:0051047 GO:0051048 GO:0051049 GO:0051050 GO:0051051 GO:0051222 GO:0051223 GO:0051224 GO:0051336 GO:0051345 GO:0060589 GO:0060627 GO:0065007 GO:0065008 GO:0065009 GO:0070201 GO:0071944 GO:0090087 GO:0090276 GO:0090278 GO:0098772 GO:1903530 GO:1903531 GO:1903532 GO:1904950 GO:1904951

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANAPC4_WD40 Synaptobrevin

Protein Analysis

1236

Amino Acids

135.42

Weight (kDa)

5.25

Isoelectric Point (pI)

37.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Synaptobrevin	PF00957	1191 - 1233	2.1e-06	Synaptobrevin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0002511)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05570 AT5G05570
fragaria_vesca	FvH4_6g11290 FvH4_6g11290 FvH4_6g11290 FvH4_7g24600 FvH4_7g24600
malus_domestica	MD01G1154200.v1.1 MD04G1155600.v1.1 MD07G1223200.v1.1 MD12G1168800.v1.1
prunus_persica	Prupe.2G251300_v2.0.a1 Prupe.6G279100_v2.0.a1 Prupe.6G279100_v2.0.a1
pyrus_communis	pycom01g17150 pycom04g14030 pycom12g16030
rosa_chinensis	RchiOBHm_Chr1g0370431 RchiOBHm_Chr3g0462831
rosa_laevigata	RLG00000024829 RLG00000027044
rosa_multiflora	Rmu_sc0000766.1_g000011 Rmu_sc0005656.1_g000008 Rmu_sc0035228.1_g000001
rosa_roxburghii	Rroxscaffold_4G00286580 Rroxscaffold_6G00417170
rosa_rugosa	Rorug01G0356400 Rorug01G0356500 Rorug01G0356600 Rorug03G0059500 Rorug03G0059500
rosa_samantha	Rh1AG364900 Rh1BG328100 Rh1CG341100 Rh1DG358400 Rh3AG117600 Rh3BG121400 Rh3CG124300 Rh3DG123000
rosa_wichuraiana	Rw1G032160 Rw3G009970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	672
AccB1I	GGYRCC	1 cut(s)	386
AccB7I	CCANNNNNTGG	1 cut(s)	1145
AccI	GTMKAC	2 cut(s)	857, 1394
AcoI	YGGCCR	2 cut(s)	1879, 3337
AcsI	RAATTY	6 cut(s)	300, 1477, 1634, 1843, 2032, 3277
AcuI	CTGAAG	6 cut(s)	468, 522, 1044, 1044, 2828, 3067
AcvI	CACGTG	1 cut(s)	3563
AdeI	CACNNNGTG	1 cut(s)	1735
AfaI	GTAC	4 cut(s)	1906, 2537, 2634, 3033
AflIII	ACRYGT	2 cut(s)	396, 2724
AhdI	GACNNNNNGTC	1 cut(s)	935
AhlI	ACTAGT	1 cut(s)	3476
AjnI	CCWGG	3 cut(s)	165, 2260, 2676
AjuI	GAANNNNNNNTTGG	2 cut(s)	2500, 2532
AleI	CACNNNNGTG	2 cut(s)	1796, 3326
Alw21I	GWGCWC	2 cut(s)	1793, 3643
Alw26I	GTCTC	9 cut(s)	289, 922, 1486, 1627, 1712, 1942, 2345, 2781, 3550
Alw44I	GTGCAC	1 cut(s)	1789
AlwNI	CAGNNNCTG	4 cut(s)	1145, 2799, 3509, 3557
AoxI	GGCC	9 cut(s)	234, 985, 1433, 1781, 1879, 2495, 3066, 3337, 3382
ApaLI	GTGCAC	1 cut(s)	1789
ApeKI	GCWGC	7 cut(s)	506, 1142, 3179, 3506, 3551, 3554, 3557
ApoI	RAATTY	6 cut(s)	300, 1477, 1634, 1843, 2032, 3277
AseI	ATTAAT	1 cut(s)	2951
Asp700I	GAANNNNTTC	3 cut(s)	210, 1029, 1479
AspA2I	CCTAGG	1 cut(s)	980
AspLEI	GCGC	1 cut(s)	3473
AspS9I	GGNCC	8 cut(s)	661, 985, 1096, 1577, 1781, 2496, 3244, 3383
AsuC2I	CCSGG	1 cut(s)	1883
AsuII	TTCGAA	1 cut(s)	1528
AvaII	GGWCC	4 cut(s)	661, 1096, 1577, 3244
AvrII	CCTAGG	1 cut(s)	980
AxyI	CCTNAGG	2 cut(s)	48, 1581
BaeGI	GKGCMC	1 cut(s)	1793
BaeI	ACNNNNGTAYC	2 cut(s)	3023, 3056
BalI	TGGCCA	1 cut(s)	3339
BamHI	GGATCC	1 cut(s)	2587
BanI	GGYRCC	1 cut(s)	386
BanII	GRGCYC	3 cut(s)	2012, 2021, 3643
BbrPI	CACGTG	1 cut(s)	3563
BbsI	GAAGAC	2 cut(s)	1050, 3101
Bbv12I	GWGCWC	2 cut(s)	1793, 3643
BbvCI	CCTCAGC	1 cut(s)	1360
BbvI	GCAGC	7 cut(s)	518, 1129, 3166, 3493, 3544, 3563, 3566
BciT130I	CCWGG	3 cut(s)	167, 2262, 2678
BciVI	GTATCC	2 cut(s)	1290, 2674
BclI	TGATCA	2 cut(s)	2484, 2979
BcnI	CCSGG	1 cut(s)	1883
BcoDI	GTCTC	9 cut(s)	289, 922, 1486, 1627, 1712, 1942, 2345, 2781, 3550
BcuI	ACTAGT	1 cut(s)	3476
BfaI	CTAG	6 cut(s)	279, 561, 905, 981, 3362, 3477
BfmI	CTRYAG	5 cut(s)	1269, 1572, 1602, 3135, 3549
BfuAI	ACCTGC	1 cut(s)	672
BfuI	GTATCC	2 cut(s)	1290, 2674
BglI	GCCNNNNNGGC	1 cut(s)	2016
BglII	AGATCT	2 cut(s)	872, 1598
BisI	GCNGC	7 cut(s)	507, 1143, 3180, 3507, 3552, 3555, 3558
BlnI	CCTAGG	1 cut(s)	980
BlsI	GCNGC	7 cut(s)	508, 1144, 3181, 3508, 3553, 3556, 3559
Bme1390I	CCNGG	4 cut(s)	167, 1883, 2262, 2678
Bme18I	GGWCC	4 cut(s)	661, 1096, 1577, 3244
BmeRI	GACNNNNNGTC	1 cut(s)	935
BmgT120I	GGNCC	8 cut(s)	661, 985, 1096, 1577, 1781, 2496, 3244, 3383
BmiI	GGNNCC	6 cut(s)	163, 388, 655, 986, 2589, 3246
BmrFI	CCNGG	4 cut(s)	167, 1883, 2262, 2678
BmrI	ACTGGG	2 cut(s)	1949, 3546
BmsI	GCATC	9 cut(s)	125, 433, 610, 715, 1459, 1528, 1602, 2512, 3662
BmuI	ACTGGG	2 cut(s)	1949, 3546
BoxI	GACNNNNGTC	1 cut(s)	2897
BpiI	GAAGAC	2 cut(s)	1050, 3101
BplI	GAGNNNNNCTC	4 cut(s)	749, 781, 3625, 3657
BpmI	CTGGAG	1 cut(s)	2673
Bpu10I	CCTNAGC	2 cut(s)	225, 1360
Bpu14I	TTCGAA	1 cut(s)	1528
BpuEI	CTTGAG	5 cut(s)	271, 1930, 2804, 3620, 3627
BpuMI	CCSGG	1 cut(s)	1883
Bsa29I	ATCGAT	2 cut(s)	119, 3656
BsaAI	YACGTR	1 cut(s)	3563
BsaBI	GATNNNNATC	1 cut(s)	75
BsaJI	CCNNGG	7 cut(s)	165, 657, 861, 980, 1371, 1784, 3348
BsaXI	ACNNNNNCTCC	2 cut(s)	1922, 1952
Bse1I	ACTGG	7 cut(s)	956, 1447, 1955, 2479, 3226, 3256, 3541
Bse21I	CCTNAGG	2 cut(s)	48, 1581
Bse3DI	GCAATG	7 cut(s)	426, 518, 1158, 1169, 1896, 2753, 3144
Bse8I	GATNNNNATC	1 cut(s)	75
BseBI	CCWGG	3 cut(s)	167, 2262, 2678
BseCI	ATCGAT	2 cut(s)	119, 3656
BseDI	CCNNGG	7 cut(s)	165, 657, 861, 980, 1371, 1784, 3348
BseGI	GGATG	9 cut(s)	43, 175, 625, 976, 1543, 2503, 2554, 3340, 3547
BseJI	GATNNNNATC	1 cut(s)	75
BseMI	GCAATG	7 cut(s)	426, 518, 1158, 1169, 1896, 2753, 3144
BseNI	ACTGG	7 cut(s)	956, 1447, 1955, 2479, 3226, 3256, 3541
BseRI	GAGGAG	1 cut(s)	1348
BseSI	GKGCMC	1 cut(s)	1793
BseXI	GCAGC	7 cut(s)	518, 1129, 3166, 3493, 3544, 3563, 3566
BseYI	CCCAGC	1 cut(s)	1454
BsgI	GTGCAG	2 cut(s)	1295, 3543
BshFI	GGCC	9 cut(s)	236, 987, 1435, 1783, 1881, 2497, 3068, 3339, 3384
BshNI	GGYRCC	1 cut(s)	386
BshVI	ATCGAT	2 cut(s)	119, 3656
BsiHKAI	GWGCWC	2 cut(s)	1793, 3643
BsiSI	CCGG	1 cut(s)	1882
BslFI	GGGAC	3 cut(s)	1209, 1279, 2671
BsmAI	GTCTC	9 cut(s)	289, 922, 1486, 1627, 1712, 1942, 2345, 2781, 3550
BsmFI	GGGAC	3 cut(s)	1209, 1279, 2671
BsmI	GAATGC	2 cut(s)	359, 2802
BsnI	GGCC	9 cut(s)	236, 987, 1435, 1783, 1881, 2497, 3068, 3339, 3384
Bsp119I	TTCGAA	1 cut(s)	1528
Bsp1286I	GDGCHC	4 cut(s)	1793, 2012, 2021, 3643
Bsp1407I	TGTACA	1 cut(s)	2535
BspANI	GGCC	9 cut(s)	236, 987, 1435, 1783, 1881, 2497, 3068, 3339, 3384
BspDI	ATCGAT	2 cut(s)	119, 3656
BspHI	TCATGA	2 cut(s)	3112, 3259
BspLI	GGNNCC	6 cut(s)	163, 388, 655, 986, 2589, 3246
BspMAI	CTGCAG	2 cut(s)	1273, 3553
BspMI	ACCTGC	1 cut(s)	672
BspT104I	TTCGAA	1 cut(s)	1528
BspT107I	GGYRCC	1 cut(s)	386
BsrDI	GCAATG	7 cut(s)	426, 518, 1158, 1169, 1896, 2753, 3144
BsrGI	TGTACA	1 cut(s)	2535
BsrI	ACTGG	7 cut(s)	956, 1447, 1955, 2479, 3226, 3256, 3541
BssECI	CCNNGG	7 cut(s)	165, 657, 861, 980, 1371, 1784, 3348
BssT1I	CCWWGG	4 cut(s)	657, 861, 980, 1371
Bst2UI	CCWGG	3 cut(s)	167, 2262, 2678
Bst6I	CTCTTC	1 cut(s)	20
BstAPI	GCANNNNNTGC	3 cut(s)	148, 1328, 3557
BstAUI	TGTACA	1 cut(s)	2535
BstBAI	YACGTR	1 cut(s)	3563
BstBI	TTCGAA	1 cut(s)	1528
BstC8I	GCNNGC	7 cut(s)	140, 149, 153, 1222, 1329, 3126, 3579
BstDSI	CCRYGG	1 cut(s)	3348
BstENI	CCTNNNNNAGG	1 cut(s)	2607
BstF5I	GGATG	9 cut(s)	43, 175, 625, 976, 1543, 2503, 2554, 3340, 3547
BstHHI	GCGC	1 cut(s)	3473
BstMAI	GTCTC	9 cut(s)	289, 922, 1486, 1627, 1712, 1942, 2345, 2781, 3550
BstMWI	GCNNNNNNNGC	9 cut(s)	144, 148, 506, 1148, 1328, 2016, 3557, 3563, 3659
BstNI	CCWGG	3 cut(s)	167, 2262, 2678
BstNSI	RCATGY	3 cut(s)	400, 1208, 2728
BstPAI	GACNNNNGTC	1 cut(s)	2897
BstSCI	CCNGG	4 cut(s)	165, 1881, 2260, 2676
BstSFI	CTRYAG	5 cut(s)	1269, 1572, 1602, 3135, 3549
BstSLI	GKGCMC	1 cut(s)	1793
BstV1I	GCAGC	7 cut(s)	518, 1129, 3166, 3493, 3544, 3563, 3566
BstV2I	GAAGAC	2 cut(s)	1050, 3101
BstX2I	RGATCY	8 cut(s)	872, 1520, 1598, 2173, 2278, 2383, 2587, 3406
BstXI	CCANNNNNNTGG	3 cut(s)	2140, 2245, 3682
BstYI	RGATCY	8 cut(s)	872, 1520, 1598, 2173, 2278, 2383, 2587, 3406
Bsu15I	ATCGAT	2 cut(s)	119, 3656
Bsu36I	CCTNAGG	2 cut(s)	48, 1581
BsuI	GTATCC	2 cut(s)	1290, 2674
BsuRI	GGCC	9 cut(s)	236, 987, 1435, 1783, 1881, 2497, 3068, 3339, 3384
BsuTUI	ATCGAT	2 cut(s)	119, 3656
BtgI	CCRYGG	1 cut(s)	3348
BtgZI	GCGATG	1 cut(s)	798
BtsCI	GGATG	9 cut(s)	43, 175, 625, 976, 1543, 2503, 2554, 3340, 3547
BtsI	GCAGTG	1 cut(s)	1278
BtsIMutI	CAGTG	7 cut(s)	353, 949, 1278, 1323, 1939, 2472, 2875
BveI	ACCTGC	1 cut(s)	672
Cac8I	GCNNGC	7 cut(s)	140, 149, 153, 1222, 1329, 3126, 3579
CaiI	CAGNNNCTG	4 cut(s)	1145, 2799, 3509, 3557
CciI	TCATGA	2 cut(s)	3112, 3259
CfoI	GCGC	1 cut(s)	3473
Cfr13I	GGNCC	8 cut(s)	661, 985, 1096, 1577, 1781, 2496, 3244, 3383
ClaI	ATCGAT	2 cut(s)	119, 3656
Csp6I	GTAC	4 cut(s)	1905, 2536, 2633, 3032
CviQI	GTAC	4 cut(s)	1905, 2536, 2633, 3032
DraI	TTTAAA	3 cut(s)	241, 1653, 2379
DraIII	CACNNNGTG	1 cut(s)	1735
DriI	GACNNNNNGTC	1 cut(s)	935
EaeI	YGGCCR	2 cut(s)	1879, 3337
Eam1104I	CTCTTC	1 cut(s)	20
Eam1105I	GACNNNNNGTC	1 cut(s)	935
EarI	CTCTTC	1 cut(s)	20
Ecl136II	GAGCTC	1 cut(s)	3641
Eco130I	CCWWGG	4 cut(s)	657, 861, 980, 1371
Eco24I	GRGCYC	3 cut(s)	2012, 2021, 3643
Eco32I	GATATC	2 cut(s)	219, 1511
Eco47I	GGWCC	4 cut(s)	661, 1096, 1577, 3244
Eco53kI	GAGCTC	1 cut(s)	3641
Eco57I	CTGAAG	6 cut(s)	468, 522, 1044, 1044, 2828, 3067
Eco72I	CACGTG	1 cut(s)	3563
Eco81I	CCTNAGG	2 cut(s)	48, 1581
EcoICRI	GAGCTC	1 cut(s)	3641
EcoNI	CCTNNNNNAGG	1 cut(s)	2607
EcoO109I	RGGNCCY	2 cut(s)	661, 1577
EcoRI	GAATTC	1 cut(s)	2032
EcoRII	CCWGG	3 cut(s)	165, 2260, 2676
EcoRV	GATATC	2 cut(s)	219, 1511
EcoT14I	CCWWGG	4 cut(s)	657, 861, 980, 1371
EcoT22I	ATGCAT	2 cut(s)	1085, 2505
EcoT38I	GRGCYC	3 cut(s)	2012, 2021, 3643
ErhI	CCWWGG	4 cut(s)	657, 861, 980, 1371
FalI	AAGNNNNNCTT	2 cut(s)	627, 659
FaqI	GGGAC	3 cut(s)	1209, 1279, 2671
FauNDI	CATATG	2 cut(s)	592, 3707
FbaI	TGATCA	2 cut(s)	2484, 2979
FblI	GTMKAC	2 cut(s)	857, 1394
Fnu4HI	GCNGC	7 cut(s)	507, 1143, 3180, 3507, 3552, 3555, 3558
FokI	GGATG	9 cut(s)	30, 182, 632, 963, 1550, 2490, 2561, 3347, 3554
FriOI	GRGCYC	3 cut(s)	2012, 2021, 3643
Fsp4HI	GCNGC	7 cut(s)	507, 1143, 3180, 3507, 3552, 3555, 3558
FspBI	CTAG	6 cut(s)	279, 561, 905, 981, 3362, 3477
GlaI	GCGC	1 cut(s)	3472
GluI	GCNGC	7 cut(s)	507, 1143, 3180, 3507, 3552, 3555, 3558
GsaI	CCCAGC	1 cut(s)	1458
GsuI	CTGGAG	1 cut(s)	2673
HaeIII	GGCC	9 cut(s)	236, 987, 1435, 1783, 1881, 2497, 3068, 3339, 3384
HapII	CCGG	1 cut(s)	1882
HhaI	GCGC	1 cut(s)	3473
Hin6I	GCGC	1 cut(s)	3471
HinP1I	GCGC	1 cut(s)	3471
HincII	GTYRAC	2 cut(s)	1387, 2674
HindII	GTYRAC	2 cut(s)	1387, 2674
HindIII	AAGCTT	1 cut(s)	1325
HpaII	CCGG	1 cut(s)	1882
Hpy166II	GTNNAC	7 cut(s)	858, 1096, 1387, 1395, 1791, 2674, 2722
Hpy8I	GTNNAC	7 cut(s)	858, 1096, 1387, 1395, 1791, 2674, 2722
Hpy99I	CGWCG	1 cut(s)	1561
HpyCH4IV	ACGT	3 cut(s)	2631, 3562, 3586
HpyF10VI	GCNNNNNNNGC	9 cut(s)	144, 148, 506, 1148, 1328, 2016, 3557, 3563, 3659
HpySE526I	ACGT	3 cut(s)	2631, 3562, 3586
HspAI	GCGC	1 cut(s)	3471
Ksp22I	TGATCA	2 cut(s)	2484, 2979
LmnI	GCTCC	2 cut(s)	1850, 3638
Lsp1109I	GCAGC	7 cut(s)	518, 1129, 3166, 3493, 3544, 3563, 3566
LweI	GCATC	9 cut(s)	125, 433, 610, 715, 1459, 1528, 1602, 2512, 3662
MaeI	CTAG	6 cut(s)	279, 561, 905, 981, 3362, 3477
MaeII	ACGT	3 cut(s)	2631, 3562, 3586
MaeIII	GTNAC	6 cut(s)	60, 1163, 1735, 2744, 2789, 2795
MfeI	CAATTG	1 cut(s)	156
MflI	RGATCY	8 cut(s)	872, 1520, 1598, 2173, 2278, 2383, 2587, 3406
MhlI	GDGCHC	4 cut(s)	1793, 2012, 2021, 3643
MlsI	TGGCCA	1 cut(s)	3339
MluNI	TGGCCA	1 cut(s)	3339
MlyI	GAGTC	8 cut(s)	863, 924, 2117, 2222, 2327, 2642, 2907, 3104
MmeI	TCCRAC	4 cut(s)	523, 1574, 1965, 2816
Mox20I	TGGCCA	1 cut(s)	3339
Mph1103I	ATGCAT	2 cut(s)	1085, 2505
MroXI	GAANNNNTTC	3 cut(s)	210, 1029, 1479
MscI	TGGCCA	1 cut(s)	3339
MslI	CAYNNNNRTG	4 cut(s)	1209, 1796, 3039, 3326
Msp20I	TGGCCA	1 cut(s)	3339
MspA1I	CMGCKG	5 cut(s)	509, 1142, 1796, 3506, 3557
MspI	CCGG	1 cut(s)	1882
MspR9I	CCNGG	4 cut(s)	167, 1883, 2262, 2678
MunI	CAATTG	1 cut(s)	156
Mva1269I	GAATGC	2 cut(s)	359, 2802
MvaI	CCWGG	3 cut(s)	167, 2262, 2678
MwoI	GCNNNNNNNGC	9 cut(s)	144, 148, 506, 1148, 1328, 2016, 3557, 3563, 3659
NciI	CCSGG	1 cut(s)	1883
NdeI	CATATG	2 cut(s)	592, 3707
NlaIV	GGNNCC	6 cut(s)	163, 388, 655, 986, 2589, 3246
NmuCI	GTSAC	5 cut(s)	60, 1163, 1735, 2744, 2789
NsiI	ATGCAT	2 cut(s)	1085, 2505
NspI	RCATGY	3 cut(s)	400, 1208, 2728
NspV	TTCGAA	1 cut(s)	1528
OliI	CACNNNNGTG	2 cut(s)	1796, 3326
PagI	TCATGA	2 cut(s)	3112, 3259
PciI	ACATGT	2 cut(s)	396, 2724
PctI	GAATGC	2 cut(s)	359, 2802
PdmI	GAANNNNTTC	3 cut(s)	210, 1029, 1479
PflFI	GACNNNGTC	1 cut(s)	1934
PflMI	CCANNNNNTGG	1 cut(s)	1145
PkrI	GCNGC	7 cut(s)	508, 1144, 3181, 3508, 3553, 3556, 3559
PleI	GAGTC	8 cut(s)	862, 924, 2117, 2222, 2327, 2642, 2906, 3103
PmaCI	CACGTG	1 cut(s)	3563
PmlI	CACGTG	1 cut(s)	3563
PpsI	GAGTC	8 cut(s)	862, 924, 2117, 2222, 2327, 2642, 2906, 3103
Ppu21I	YACGTR	1 cut(s)	3563
PpuMI	RGGWCCY	2 cut(s)	661, 1577
PscI	ACATGT	2 cut(s)	396, 2724
PshAI	GACNNNNGTC	1 cut(s)	2897
PshBI	ATTAAT	1 cut(s)	2951
Psp124BI	GAGCTC	1 cut(s)	3643
Psp5II	RGGWCCY	2 cut(s)	661, 1577
Psp6I	CCWGG	3 cut(s)	165, 2260, 2676
PspCI	CACGTG	1 cut(s)	3563
PspFI	CCCAGC	1 cut(s)	1454
PspGI	CCWGG	3 cut(s)	165, 2260, 2676
PspN4I	GGNNCC	6 cut(s)	163, 388, 655, 986, 2589, 3246
PspPI	GGNCC	8 cut(s)	661, 985, 1096, 1577, 1781, 2496, 3244, 3383
PspPPI	RGGWCCY	2 cut(s)	661, 1577
PstI	CTGCAG	2 cut(s)	1273, 3553
PstNI	CAGNNNCTG	4 cut(s)	1145, 2799, 3509, 3557
PsuI	RGATCY	8 cut(s)	872, 1520, 1598, 2173, 2278, 2383, 2587, 3406
PsyI	GACNNNGTC	1 cut(s)	1934
PvuII	CAGCTG	5 cut(s)	509, 1142, 1796, 3506, 3557
RsaI	GTAC	4 cut(s)	1906, 2537, 2634, 3033
RsaNI	GTAC	4 cut(s)	1905, 2536, 2633, 3032
RseI	CAYNNNNRTG	4 cut(s)	1209, 1796, 3039, 3326
SacI	GAGCTC	1 cut(s)	3643
SatI	GCNGC	7 cut(s)	507, 1143, 3180, 3507, 3552, 3555, 3558
Sau96I	GGNCC	8 cut(s)	661, 985, 1096, 1577, 1781, 2496, 3244, 3383
SchI	GAGTC	8 cut(s)	863, 924, 2117, 2222, 2327, 2642, 2907, 3104
ScrFI	CCNGG	4 cut(s)	167, 1883, 2262, 2678
SduI	GDGCHC	4 cut(s)	1793, 2012, 2021, 3643
SfaNI	GCATC	9 cut(s)	125, 433, 610, 715, 1459, 1528, 1602, 2512, 3662
SfcI	CTRYAG	5 cut(s)	1269, 1572, 1602, 3135, 3549
SfuI	TTCGAA	1 cut(s)	1528
SinI	GGWCC	4 cut(s)	661, 1096, 1577, 3244
SmiMI	CAYNNNNRTG	4 cut(s)	1209, 1796, 3039, 3326
SmlI	CTYRAG	5 cut(s)	286, 1945, 2783, 3599, 3642
SmoI	CTYRAG	5 cut(s)	286, 1945, 2783, 3599, 3642
SpeI	ACTAGT	1 cut(s)	3476
SspI	AATATT	2 cut(s)	202, 3269
SspMI	CTAG	6 cut(s)	279, 561, 905, 981, 3362, 3477
SstI	GAGCTC	1 cut(s)	3643
StyD4I	CCNGG	4 cut(s)	165, 1881, 2260, 2676
StyI	CCWWGG	4 cut(s)	657, 861, 980, 1371
TaiI	ACGT	3 cut(s)	2634, 3565, 3589
TatI	WGTACW	2 cut(s)	1904, 2535
TscAI	CASTG	7 cut(s)	353, 956, 1278, 1323, 1939, 2479, 2875
TseFI	GTSAC	5 cut(s)	60, 1163, 1735, 2744, 2789
TseI	GCWGC	7 cut(s)	506, 1142, 3179, 3506, 3551, 3554, 3557
Tsp45I	GTSAC	5 cut(s)	60, 1163, 1735, 2744, 2789
TspGWI	ACGGA	1 cut(s)	1545
TspRI	CASTG	7 cut(s)	353, 956, 1278, 1323, 1939, 2479, 2875
Tth111I	GACNNNGTC	1 cut(s)	1934
Van91I	CCANNNNNTGG	1 cut(s)	1145
VneI	GTGCAC	1 cut(s)	1789
VpaK11BI	GGWCC	4 cut(s)	661, 1096, 1577, 3244
VspI	ATTAAT	1 cut(s)	2951
XagI	CCTNNNNNAGG	1 cut(s)	2607
XapI	RAATTY	6 cut(s)	300, 1477, 1634, 1843, 2032, 3277
XceI	RCATGY	3 cut(s)	400, 1208, 2728
XmaJI	CCTAGG	1 cut(s)	980
XmiI	GTMKAC	2 cut(s)	857, 1394
XmnI	GAANNNNTTC	3 cut(s)	210, 1029, 1479
XspI	CTAG	6 cut(s)	279, 561, 905, 981, 3362, 3477
Zsp2I	ATGCAT	2 cut(s)	1085, 2505

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.