Rroxscaffold_6G00417170

WD40 repeats

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0002511
Physical Location & Seq
Reverse (-)
38976951 .. 38985852
8902 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00417170.1

Sequence Viewer

Length: 3360 bp
ATGTTCGCCAAGCGACTCTTACAGAAGGCCGTCAACCACCACCACCATTCTCAGCATAGTTTGCAACAAGAAAGTATGACGTCAGCAGACTTGGACCTGCGAGTTGCAGCTCACTATGGTATTCCATCCACGGCATCCATTCTTGCTTTCGACCCCATTCAGCGGCTTCTGGCCATCGGGACATTGGATGGGAGGATTAAAGTAATTGGTGGTGACGGTATTGAAGGACTTCTTATATCCCCAAAACAATTGCCTTACAAATACATCGAGTTTCTACATAACCAGGGTTACTTGGTCAGCATCTTAAATGATAATAACATTGAGGTTTGGAATCTTGAGGGCAGATGCCTAGTTTATTCTCTAGAGTGGGAATCAAATATAACTGCTTTTTCTGTAATCCATGGCTCGAACTTAATGTATGTGGGCGATGAGTATGCTCTATTGGCTGTGGTGAAGTATGATGCTGACGAGGGAAAACTTTTGCAGTTGCCATATCATATATCTGCAGATTCATTAAGCGAAGCTGCCGAGTTTCCATTTCCTACCGACCAACCGATAGTTGGACTTCTTCCCCAACCTGGTTCATCTGGAAATAGAGTACTGATTGCGTATCAAAATGGGTTGCTTATTCTTTGGGATGTGTCTGAGGCTCAAATTGTTTTTATTGGAGGTGGTAAGGATCTCCAACTAAAGGATGGAGTTGTTAAGCCTACTGATGAAGTCAATATAGATTCTCCAGAAAATACAATAGAACATCAACTGGGAGAGAAAGAGATAAGTGCTCTTTGTTGGGCATCATCCAATGGGTCCATTCTGGCTGTGGGATATGTAGATGGAGATATTCTGTTCTGGAACACGTCATCTGCTGCTTCCATTAAGGGTCAGCAAGCATTGTCATCATCTAATAATGTTGTTAAGTTACGATTATCATCATCAGAAAGAAGACTTCCTGTCATTGTCTTACAGTGGTCCACATTAAATAAATCCCATAATGATTCTGATGGACAACTATTTATCTATGGTGGCGATGAAATAGGATCAGATGAAGTTCTGACGGTTTTGACTCTTGATTGGTCTTCTGGGATGGGGAATTTAAGATGTGTTGGCCGTACGGACCTTACCCTTACTGGTTCGTTTGCAGACATGATTTTATTACCAAATTCTGCAACAATTGCGGGTAATCACAGAGCTGATGCATTTGTGTTAACAAACCCTGGGCAATTGCACTTTTATGATGAAACCAGTCTCTCGGCCCTAATATCCCAGCAAGAAAAGAAACCATCTGTCTCTGCTTTGGAGTTTCCAGTGGTGATACCTACCACTAATCCGACCATGACTGCTGCCAGACTTATTAGGACAGCTACTGGGGAGAACTCGTTAAAGTCTCTATCAGAGTTATGCTCAGTTGTGAACCTTGGCTCACTACCGACTTCATTAGATGGTACAAAATGGCCCTTGACTGGGGGTGTGCCCAGTCAATTGTCTCTTTCGAAGAGTAGTGGTATTGAGAGAGCATATCTAGCAGGATATTCAGATGGAACTGTTCGGATCTGGAATGCCACCTATCCGCTCTTATCTTTTATCTCTGTTTTAGAAGGCGAGGTGCAAGGTATAAAAGTGGCTGGTTTAAGTTCTCCGGTATCGAGAATGGATTTCTGCAGCTTTACTTTAAACTTGGCTGTTGGCAGTGAATCTGGTTTGGTTCGAATTTATAACCTCAAAGGGCGTTCAGATGGGGTAAAATTCCTCTTTGTGACCGAAACCAAATGTGAAGCCCACAGTTTGTCTCAAGGAAAAGGACCTCAATGCAGAGCTGTTTTCAGTCTTACTAATTCCCGAGTTCAAGCACTTCAGTTTGTGAAGCATGGAGGTAAACTTGCAGTGGGATTTGAATGCGGTCATGTTGCAATGCTGGACACAAGTTCCTTATCTATATTGTTCTTCATAAAAGATGCATATTTCTCTAGCTCCCCAGTCATTTCAATGACTTGGAAAGAAATTACAAATCCTCAAGGCCTCTTGAAGAGTTCAAAGCTCTCGGAAACTAAATCACCAGTTCACCCTGCAGAGGAAGTAATGTTCATTCTAACCAAAGATGCAAATATACATTTAATTTGTGGAAACACGGGTAATATGATCATCCCTCGGCCATGGCACTTGAAAAAGGAGTCAATTGCAATTTCAATGTATGTTATAGATGGCAGAATTTCAGCCTCTAAAGTATCTGATGCAAATCTGCCGGAAGAGGCCTCAAAGGATACTTCAACCAAGAATGAGTCTATGGCAGGCAGTTCTCCAATTCCTATAGATTCACTTGAGGTGGACCAGGACTATAATTCAGAAAATGCATACTCTGAAGAAAGATTGTTGAATTCACTGATTTTGCTTTGTTGTGTGGATTCAGTGCAATTGTACTCCACAAAATCTGTGATTCAGGGAAACAATGAACCCATTCGAAAGGTGAAACATGCAAGACCTTGCATTTGGACGGCAACTCTGAAAAAAGTTGAAAAAGTTTGGGGATTGGCTTTGCTGTTTCAGACTGGAGAGATTGAAATTAGATCTATTCCTGATTTAGAATTGGTGAAAGAAAGCTCCTTAATGTCAATTCTAAGGTGGAATTGTAAGGCAAATATGGATAAGACAATGAGTTCCGATGATGCACATATCACACTGGCAAATGGGTATGAAACGGTATTCATCTCTCTGTTAGCTGCTGAAAATGATTTCAGGATTCCAGAGTCTTTGCCTTGTCTCCATGATGCAGTTCTTGCAGCTGCTGCAGATGCTGCATTAAGTGCCTCTTTAAATCAGAAGAAACAGAGTACTGCCCCTGCGATATTAGGTGGTATTGTCAAAGGCTTAAAAGGAGGGAAAATGGTTCAGAGTGGAGATTCTACTGCAACTCCTAAATCCAGGTTCGATCATTTAGAAGGCATGTTTTGCAAGTCCCAGCAGTGGGACGCGGTCCCAGCTACGGATCATCAAGAAAATCTGGAGCTTAATATAGATGACATTGAAATTGATGAACCTCTACGCATGACATCTACTTCAACATCCCATGATGTTGATAATAAAAGGAGAGAAGGGAACTCAGAAAGGGATAGATTATTTCAAGGTGGGACTAGTGATACAAAGCCCAGAGTTAGGACTGCTGAAGAAGTTAAAGCTAAATATAGAAAAGCTGAGGATGCTTCTTCGGTGGCTTCCCAAGCAAGAAATAAGCTCATGGAGAGGGGGCAAAAACTTGAGAAACTCAGCAAGCGCACTGAGGATCTACAGAATGGAGCTGAAGATTTTGCATCAATGGCGAATGAGCTAGTCAAGACACTAGAAGCGCGAAAATGGTGGCATATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000137 GO:0000139 GO:0000902 GO:0000904 GO:0002791 GO:0003674 GO:0005096 GO:0005198 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005794 GO:0005795 GO:0005802 GO:0005856 GO:0005886 GO:0005938 GO:0006810 GO:0006892 GO:0006893 GO:0006996 GO:0007010 GO:0007275 GO:0007399 GO:0007409 GO:0008047 GO:0008150 GO:0009653 GO:0009987 GO:0010008 GO:0012505 GO:0015629 GO:0016020 GO:0016043 GO:0016192 GO:0017016 GO:0017137 GO:0017157 GO:0019899 GO:0019900 GO:0019901 GO:0022008 GO:0022607 GO:0030029 GO:0030030 GO:0030036 GO:0030154 GO:0030182 GO:0030234 GO:0030695 GO:0030863 GO:0030864 GO:0030865 GO:0030866 GO:0031090 GO:0031175 GO:0031267 GO:0031410 GO:0031901 GO:0031982 GO:0031984 GO:0031985 GO:0032501 GO:0032502 GO:0032588 GO:0032879 GO:0032880 GO:0032989 GO:0032990 GO:0043085 GO:0043087 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043547 GO:0043933 GO:0044085 GO:0044093 GO:0044422 GO:0044424 GO:0044430 GO:0044431 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0048193 GO:0048468 GO:0048666 GO:0048667 GO:0048699 GO:0048731 GO:0048812 GO:0048856 GO:0048858 GO:0048869 GO:0050708 GO:0050789 GO:0050790 GO:0050794 GO:0051020 GO:0051046 GO:0051049 GO:0051179 GO:0051223 GO:0051234 GO:0051336 GO:0051345 GO:0060589 GO:0060627 GO:0061564 GO:0065003 GO:0065007 GO:0065009 GO:0070201 GO:0071840 GO:0071944 GO:0090087 GO:0097708 GO:0098588 GO:0098772 GO:0098791 GO:0098805 GO:0098876 GO:0099568 GO:0120036 GO:0120039 GO:1903530
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ANAPC4_WD40 Synaptobrevin

Protein Analysis

1119

Amino Acids

122.27

Weight (kDa)

5.58

Isoelectric Point (pI)

42.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Synaptobrevin PF00957 1073 - 1113 2.5e-06 Synaptobrevin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1713
AatII GACGTC 1 cut(s) 83
Acc36I ACCTGC 1 cut(s) 105
AccBSI CCGCTC 1 cut(s) 1570
AccII CGCG 2 cut(s) 2966, 3340
AciI CCGC 5 cut(s) 163, 1175, 1568, 1896, 2966
AclWI GGATC 5 cut(s) 687, 1045, 1556, 2988, 3282
AcoI YGGCCR 3 cut(s) 171, 1105, 2147
AcsI RAATTY 6 cut(s) 1090, 1159, 1707, 1742, 2205, 2371
AcuI CTGAAG 4 cut(s) 1835, 2376, 3177, 3312
AcyI GRCGYC 1 cut(s) 80
AfaI GTAC 5 cut(s) 600, 1111, 1444, 2414, 2827
AflIII ACRYGT 1 cut(s) 855
AhdI GACNNNNNGTC 1 cut(s) 950
AhlI ACTAGT 1 cut(s) 3125
AjiI CACGTC 1 cut(s) 858
AjnI CCWGG 5 cut(s) 282, 577, 1213, 2325, 2915
AloI GAACNNNNNNTCC 2 cut(s) 2063, 2095
Alw21I GWGCWC 1 cut(s) 784
Alw26I GTCTC 6 cut(s) 1250, 1291, 1389, 1488, 1791, 2759
AlwI GGATC 5 cut(s) 687, 1045, 1556, 2988, 3282
AlwNI CAGNNNCTG 3 cut(s) 1364, 2780, 2789
Ama87I CYCGRG 1 cut(s) 1836
AoxI GGCC 8 cut(s) 27, 171, 1105, 1251, 1451, 2014, 2147, 2247
ApoI RAATTY 6 cut(s) 1090, 1159, 1707, 1742, 2205, 2371
ArsI GACNNNNNNTTYG 2 cut(s) 2466, 2498
Asp700I GAANNNNTTC 2 cut(s) 228, 2451
AspLEI GCGC 2 cut(s) 3267, 3340
AspS9I GGNCC 9 cut(s) 94, 807, 969, 1114, 1252, 1452, 1799, 2323, 2968
AsuHPI GGTGA 7 cut(s) 224, 463, 1321, 2043, 2051, 2473, 2596
AsuII TTCGAA 3 cut(s) 1490, 1705, 2455
AvaI CYCGRG 1 cut(s) 1836
AvaII GGWCC 7 cut(s) 94, 807, 969, 1114, 1799, 2323, 2968
BaeGI GKGCMC 1 cut(s) 1473
BalI TGGCCA 1 cut(s) 173
BbsI GAAGAC 2 cut(s) 949, 1068
Bbv12I GWGCWC 1 cut(s) 784
BbvCI CCTCAGC 1 cut(s) 3186
BceAI ACGGC 4 cut(s) 14, 147, 1092, 2505
BcgI CGANNNNNNTGC 2 cut(s) 416, 450
BciT130I CCWGG 5 cut(s) 284, 579, 1215, 2327, 2917
BciVI GTATCC 1 cut(s) 2251
BclI TGATCA 1 cut(s) 2136
BcoDI GTCTC 6 cut(s) 1250, 1291, 1389, 1488, 1791, 2759
BcuI ACTAGT 1 cut(s) 3125
BfaI CTAG 7 cut(s) 350, 362, 1520, 1965, 3126, 3320, 3332
BfmI CTRYAG 6 cut(s) 504, 1657, 2064, 2304, 2781, 3278
BfuAI ACCTGC 1 cut(s) 105
BfuI GTATCC 1 cut(s) 2251
BglII AGATCT 1 cut(s) 2561
BmcAI AGTACT 2 cut(s) 600, 2827
Bme1390I CCNGG 5 cut(s) 284, 579, 1215, 2327, 2917
Bme18I GGWCC 7 cut(s) 94, 807, 969, 1114, 1799, 2323, 2968
BmeRI GACNNNNNGTC 1 cut(s) 950
BmeT110I CYCGRG 1 cut(s) 1836
BmgBI CACGTC 1 cut(s) 858
BmgT120I GGNCC 9 cut(s) 94, 807, 969, 1114, 1252, 1452, 1799, 2323, 2968
BmiI GGNNCC 2 cut(s) 808, 2970
BmrFI CCNGG 5 cut(s) 284, 579, 1215, 2327, 2917
BmrI ACTGGG 5 cut(s) 770, 1374, 1467, 1470, 1967
BmuI ACTGGG 5 cut(s) 770, 1374, 1467, 1470, 1967
BpiI GAAGAC 2 cut(s) 949, 1068
BplI GAGNNNNNCTC 2 cut(s) 1385, 1417
BpmI CTGGAG 3 cut(s) 720, 2565, 3017
Bpu10I CCTNAGC 1 cut(s) 3186
Bpu14I TTCGAA 3 cut(s) 1490, 1705, 2455
BpuEI CTTGAG 5 cut(s) 356, 1773, 1995, 2336, 3269
BsaBI GATNNNNATC 2 cut(s) 928, 2232
BsaHI GRCGYC 1 cut(s) 80
BsaJI CCNNGG 8 cut(s) 129, 283, 400, 1213, 1214, 1414, 2144, 2150
BsaWI WCCGGW 1 cut(s) 1636
BsaXI ACNNNNNCTCC 4 cut(s) 1361, 1391, 2890, 2920
Bse3DI GCAATG 1 cut(s) 1914
Bse8I GATNNNNATC 2 cut(s) 928, 2232
BseBI CCWGG 5 cut(s) 284, 579, 1215, 2327, 2917
BseDI CCNNGG 8 cut(s) 129, 283, 400, 1213, 1214, 1414, 2144, 2150
BseJI GATNNNNATC 2 cut(s) 928, 2232
BseMI GCAATG 1 cut(s) 1914
BseMII CTCAG 7 cut(s) 65, 636, 1416, 3108, 3177, 3261, 3271
BseSI GKGCMC 1 cut(s) 1473
BseYI CCCAGC 3 cut(s) 1263, 2952, 2971
Bsh1236I CGCG 2 cut(s) 2966, 3340
BshFI GGCC 8 cut(s) 29, 173, 1107, 1253, 1453, 2016, 2149, 2249
BsiHKAI GWGCWC 1 cut(s) 784
BsiHKCI CYCGRG 1 cut(s) 1836
BsiSI CCGG 2 cut(s) 1637, 2240
BsiWI CGTACG 1 cut(s) 1109
BslFI GGGAC 5 cut(s) 193, 2935, 2954, 2975, 3136
BsmAI GTCTC 6 cut(s) 1250, 1291, 1389, 1488, 1791, 2759
BsmFI GGGAC 5 cut(s) 193, 2935, 2954, 2975, 3136
BsmI GAATGC 2 cut(s) 1561, 1898
BsnI GGCC 8 cut(s) 29, 173, 1107, 1253, 1453, 2016, 2149, 2249
BsoBI CYCGRG 1 cut(s) 1836
Bsp119I TTCGAA 3 cut(s) 1490, 1705, 2455
Bsp1286I GDGCHC 2 cut(s) 784, 1473
Bsp143I GATC 8 cut(s) 679, 1037, 1548, 2136, 2561, 2923, 2980, 3274
Bsp19I CCATGG 2 cut(s) 400, 2150
BspACI CCGC 5 cut(s) 163, 1175, 1568, 1896, 2966
BspANI GGCC 8 cut(s) 29, 173, 1107, 1253, 1453, 2016, 2149, 2249
BspCNI CTCAG 7 cut(s) 64, 637, 1415, 3107, 3178, 3262, 3270
BspFNI CGCG 2 cut(s) 2966, 3340
BspLI GGNNCC 2 cut(s) 808, 2970
BspMAI CTGCAG 4 cut(s) 508, 1661, 2068, 2785
BspMI ACCTGC 1 cut(s) 105
BspPI GGATC 5 cut(s) 687, 1045, 1556, 2988, 3282
BspT104I TTCGAA 3 cut(s) 1490, 1705, 2455
BsrBI CCGCTC 1 cut(s) 1570
BsrDI GCAATG 1 cut(s) 1914
BssECI CCNNGG 8 cut(s) 129, 283, 400, 1213, 1214, 1414, 2144, 2150
BssMI GATC 8 cut(s) 679, 1037, 1548, 2136, 2561, 2923, 2980, 3274
BssNI GRCGYC 1 cut(s) 80
BssT1I CCWWGG 3 cut(s) 400, 1414, 2150
Bst2UI CCWGG 5 cut(s) 284, 579, 1215, 2327, 2917
Bst4CI ACNGT 6 cut(s) 218, 966, 1057, 1543, 1781, 2695
Bst6I CTCTTC 3 cut(s) 1487, 2018, 2238
BstACI GRCGYC 1 cut(s) 80
BstAPI GCANNNNNTGC 7 cut(s) 61, 1172, 2771, 2780, 2789, 2798, 2943
BstBI TTCGAA 3 cut(s) 1490, 1705, 2455
BstC8I GCNNGC 3 cut(s) 888, 2287, 3263
BstDEI CTNAG 8 cut(s) 51, 645, 1402, 2612, 3094, 3186, 3257, 3270
BstDSI CCRYGG 3 cut(s) 129, 400, 2150
BstFNI CGCG 2 cut(s) 2966, 3340
BstHHI GCGC 2 cut(s) 3267, 3340
BstKTI GATC 8 cut(s) 682, 1040, 1551, 2139, 2564, 2926, 2983, 3277
BstMAI GTCTC 6 cut(s) 1250, 1291, 1389, 1488, 1791, 2759
BstMBI GATC 8 cut(s) 679, 1037, 1548, 2136, 2561, 2923, 2980, 3274
BstNI CCWGG 5 cut(s) 284, 579, 1215, 2327, 2917
BstNSI RCATGY 2 cut(s) 2471, 2941
BstSCI CCNGG 5 cut(s) 282, 577, 1213, 2325, 2915
BstSFI CTRYAG 6 cut(s) 504, 1657, 2064, 2304, 2781, 3278
BstSLI GKGCMC 1 cut(s) 1473
BstUI CGCG 2 cut(s) 2966, 3340
BstV2I GAAGAC 2 cut(s) 949, 1068
BstX2I RGATCY 4 cut(s) 679, 1548, 2561, 3274
BstYI RGATCY 4 cut(s) 679, 1548, 2561, 3274
BsuI GTATCC 1 cut(s) 2251
BsuRI GGCC 8 cut(s) 29, 173, 1107, 1253, 1453, 2016, 2149, 2249
BtgI CCRYGG 3 cut(s) 129, 400, 2150
BtgZI GCGATG 2 cut(s) 441, 1041
BtrI CACGTC 1 cut(s) 858
BtsI GCAGTG 3 cut(s) 1693, 1887, 2963
BtsIMutI CAGTG 9 cut(s) 971, 1311, 1693, 1887, 2375, 2409, 2672, 2963, 3267
BveI ACCTGC 1 cut(s) 105
Cac8I GCNNGC 3 cut(s) 888, 2287, 3263
CaiI CAGNNNCTG 3 cut(s) 1364, 2780, 2789
CfoI GCGC 2 cut(s) 3267, 3340
Cfr13I GGNCC 9 cut(s) 94, 807, 969, 1114, 1252, 1452, 1799, 2323, 2968
CseI GACGC 1 cut(s) 2972
CsiI ACCWGGT 1 cut(s) 577
Csp6I GTAC 5 cut(s) 599, 1110, 1443, 2413, 2826
CviQI GTAC 5 cut(s) 599, 1110, 1443, 2413, 2826
DdeI CTNAG 8 cut(s) 51, 645, 1402, 2612, 3094, 3186, 3257, 3270
DpnI GATC 8 cut(s) 681, 1039, 1550, 2138, 2563, 2925, 2982, 3276
DpnII GATC 8 cut(s) 679, 1037, 1548, 2136, 2561, 2923, 2980, 3274
DraI TTTAAA 2 cut(s) 1671, 2808
DriI GACNNNNNGTC 1 cut(s) 950
EaeI YGGCCR 3 cut(s) 171, 1105, 2147
Eam1104I CTCTTC 3 cut(s) 1487, 2018, 2238
Eam1105I GACNNNNNGTC 1 cut(s) 950
EarI CTCTTC 3 cut(s) 1487, 2018, 2238
Eco130I CCWWGG 3 cut(s) 400, 1414, 2150
Eco147I AGGCCT 2 cut(s) 2016, 2249
Eco47I GGWCC 7 cut(s) 94, 807, 969, 1114, 1799, 2323, 2968
Eco57I CTGAAG 4 cut(s) 1835, 2376, 3177, 3312
Eco88I CYCGRG 1 cut(s) 1836
EcoO109I RGGNCCY 1 cut(s) 1799
EcoRI GAATTC 1 cut(s) 2371
EcoRII CCWGG 5 cut(s) 282, 577, 1213, 2325, 2915
EcoT14I CCWWGG 3 cut(s) 400, 1414, 2150
EcoT22I ATGCAT 3 cut(s) 1198, 1957, 2350
ErhI CCWWGG 3 cut(s) 400, 1414, 2150
FalI AAGNNNNNCTT 5 cut(s) 34, 216, 248, 2788, 2820
FaqI GGGAC 5 cut(s) 193, 2935, 2954, 2975, 3136
FauI CCCGC 1 cut(s) 1168
FbaI TGATCA 1 cut(s) 2136
FspBI CTAG 7 cut(s) 350, 362, 1520, 1965, 3126, 3320, 3332
GlaI GCGC 2 cut(s) 3266, 3339
GsaI CCCAGC 3 cut(s) 1267, 2956, 2975
GsuI CTGGAG 3 cut(s) 720, 2565, 3017
HaeIII GGCC 8 cut(s) 29, 173, 1107, 1253, 1453, 2016, 2149, 2249
HapII CCGG 2 cut(s) 1637, 2240
HgaI GACGC 1 cut(s) 2972
HhaI GCGC 2 cut(s) 3267, 3340
Hin1I GRCGYC 1 cut(s) 80
Hin6I GCGC 2 cut(s) 3265, 3338
HinP1I GCGC 2 cut(s) 3265, 3338
HincII GTYRAC 2 cut(s) 34, 1206
HindII GTYRAC 2 cut(s) 34, 1206
HpaI GTTAAC 1 cut(s) 1206
HpaII CCGG 2 cut(s) 1637, 2240
HphI GGTGA 7 cut(s) 224, 463, 1321, 2043, 2051, 2473, 2596
Hpy166II GTNNAC 7 cut(s) 34, 972, 1206, 1411, 1874, 2059, 2323
Hpy8I GTNNAC 7 cut(s) 34, 972, 1206, 1411, 1874, 2059, 2323
HpyAV CCTTC 5 cut(s) 19, 218, 1589, 2927, 3080
HpyCH4III ACNGT 6 cut(s) 218, 966, 1057, 1543, 1781, 2695
HpyCH4IV ACGT 2 cut(s) 80, 857
HpyF3I CTNAG 8 cut(s) 51, 645, 1402, 2612, 3094, 3186, 3257, 3270
HpySE526I ACGT 2 cut(s) 80, 857
Hsp92I GRCGYC 1 cut(s) 80
HspAI GCGC 2 cut(s) 3265, 3338
Ksp22I TGATCA 1 cut(s) 2136
KspAI GTTAAC 1 cut(s) 1206
Kzo9I GATC 8 cut(s) 679, 1037, 1548, 2136, 2561, 2923, 2980, 3274
LmnI GCTCC 4 cut(s) 1973, 2600, 2998, 3287
MabI ACCWGGT 1 cut(s) 577
MaeI CTAG 7 cut(s) 350, 362, 1520, 1965, 3126, 3320, 3332
MaeII ACGT 2 cut(s) 80, 857
MaeIII GTNAC 4 cut(s) 212, 287, 918, 1753
MalI GATC 8 cut(s) 681, 1039, 1550, 2138, 2563, 2925, 2982, 3276
MbiI CCGCTC 1 cut(s) 1570
MboI GATC 8 cut(s) 679, 1037, 1548, 2136, 2561, 2923, 2980, 3274
MfeI CAATTG 6 cut(s) 248, 1170, 1220, 1478, 2172, 2408
MflI RGATCY 4 cut(s) 679, 1548, 2561, 3274
MhlI GDGCHC 2 cut(s) 784, 1473
MlsI TGGCCA 1 cut(s) 173
MluNI TGGCCA 1 cut(s) 173
MlyI GAGTC 5 cut(s) 9, 1057, 2177, 2285, 2750
MmeI TCCRAC 3 cut(s) 541, 709, 1352
Mox20I TGGCCA 1 cut(s) 173
Mph1103I ATGCAT 3 cut(s) 1198, 1957, 2350
MroXI GAANNNNTTC 2 cut(s) 228, 2451
MscI TGGCCA 1 cut(s) 173
MslI CAYNNNNRTG 2 cut(s) 1230, 1982
Msp20I TGGCCA 1 cut(s) 173
MspA1I CMGCKG 2 cut(s) 163, 2777
MspI CCGG 2 cut(s) 1637, 2240
MspR9I CCNGG 5 cut(s) 284, 579, 1215, 2327, 2917
MunI CAATTG 6 cut(s) 248, 1170, 1220, 1478, 2172, 2408
Mva1269I GAATGC 2 cut(s) 1561, 1898
MvaI CCWGG 5 cut(s) 284, 579, 1215, 2327, 2917
MvnI CGCG 2 cut(s) 2966, 3340
NcoI CCATGG 2 cut(s) 400, 2150
NdeII GATC 8 cut(s) 679, 1037, 1548, 2136, 2561, 2923, 2980, 3274
NlaIV GGNNCC 2 cut(s) 808, 2970
NmeAIII GCCGAG 3 cut(s) 553, 1229, 2125
NmuCI GTSAC 2 cut(s) 212, 1753
NsiI ATGCAT 3 cut(s) 1198, 1957, 2350
NspI RCATGY 2 cut(s) 2471, 2941
NspV TTCGAA 3 cut(s) 1490, 1705, 2455
PasI CCCWGGG 1 cut(s) 1214
PceI AGGCCT 2 cut(s) 2016, 2249
PctI GAATGC 2 cut(s) 1561, 1898
PdmI GAANNNNTTC 2 cut(s) 228, 2451
Pfl23II CGTACG 1 cut(s) 1109
PflFI GACNNNGTC 1 cut(s) 2966
PleI GAGTC 5 cut(s) 9, 1057, 2176, 2284, 2749
PpsI GAGTC 5 cut(s) 9, 1057, 2176, 2284, 2749
PpuMI RGGWCCY 1 cut(s) 1799
PsiI TTATAA 1 cut(s) 1713
Psp5II RGGWCCY 1 cut(s) 1799
Psp6I CCWGG 5 cut(s) 282, 577, 1213, 2325, 2915
PspFI CCCAGC 3 cut(s) 1263, 2952, 2971
PspGI CCWGG 5 cut(s) 282, 577, 1213, 2325, 2915
PspLI CGTACG 1 cut(s) 1109
PspN4I GGNNCC 2 cut(s) 808, 2970
PspPI GGNCC 9 cut(s) 94, 807, 969, 1114, 1252, 1452, 1799, 2323, 2968
PspPPI RGGWCCY 1 cut(s) 1799
PstI CTGCAG 4 cut(s) 508, 1661, 2068, 2785
PstNI CAGNNNCTG 3 cut(s) 1364, 2780, 2789
PsuI RGATCY 4 cut(s) 679, 1548, 2561, 3274
PsyI GACNNNGTC 1 cut(s) 2966
PvuII CAGCTG 1 cut(s) 2777
RsaI GTAC 5 cut(s) 600, 1111, 1444, 2414, 2827
RsaNI GTAC 5 cut(s) 599, 1110, 1443, 2413, 2826
RseI CAYNNNNRTG 2 cut(s) 1230, 1982
Sau3AI GATC 8 cut(s) 679, 1037, 1548, 2136, 2561, 2923, 2980, 3274
Sau96I GGNCC 9 cut(s) 94, 807, 969, 1114, 1252, 1452, 1799, 2323, 2968
ScaI AGTACT 2 cut(s) 600, 2827
SchI GAGTC 5 cut(s) 9, 1057, 2177, 2285, 2750
ScrFI CCNGG 5 cut(s) 284, 579, 1215, 2327, 2917
SduI GDGCHC 2 cut(s) 784, 1473
SexAI ACCWGGT 1 cut(s) 577
SfcI CTRYAG 6 cut(s) 504, 1657, 2064, 2304, 2781, 3278
SfuI TTCGAA 3 cut(s) 1490, 1705, 2455
SinI GGWCC 7 cut(s) 94, 807, 969, 1114, 1799, 2323, 2968
SmiMI CAYNNNNRTG 2 cut(s) 1230, 1982
SmlI CTYRAG 5 cut(s) 335, 1788, 2010, 2315, 3248
SmoI CTYRAG 5 cut(s) 335, 1788, 2010, 2315, 3248
SpeI ACTAGT 1 cut(s) 3125
SseBI AGGCCT 2 cut(s) 2016, 2249
SsiI CCGC 5 cut(s) 163, 1175, 1568, 1896, 2966
SspMI CTAG 7 cut(s) 350, 362, 1520, 1965, 3126, 3320, 3332
StuI AGGCCT 2 cut(s) 2016, 2249
StyD4I CCNGG 5 cut(s) 282, 577, 1213, 2325, 2915
StyI CCWWGG 3 cut(s) 400, 1414, 2150
TaaI ACNGT 6 cut(s) 218, 966, 1057, 1543, 1781, 2695
TaiI ACGT 2 cut(s) 83, 860
TaqI TCGA 8 cut(s) 150, 267, 407, 1490, 1643, 1705, 2455, 2922
TaqII GACCGA 1 cut(s) 1772
TatI WGTACW 3 cut(s) 598, 2412, 2825
TauI GCSGC 1 cut(s) 166
TscAI CASTG 9 cut(s) 971, 1311, 1693, 1887, 2382, 2409, 2679, 2963, 3274
TseFI GTSAC 2 cut(s) 212, 1753
Tsp45I GTSAC 2 cut(s) 212, 1753
TspGWI ACGGA 2 cut(s) 1127, 2993
TspRI CASTG 9 cut(s) 971, 1311, 1693, 1887, 2382, 2409, 2679, 2963, 3274
Tth111I GACNNNGTC 1 cut(s) 2966
VpaK11BI GGWCC 7 cut(s) 94, 807, 969, 1114, 1799, 2323, 2968
XapI RAATTY 6 cut(s) 1090, 1159, 1707, 1742, 2205, 2371
XbaI TCTAGA 1 cut(s) 361
XceI RCATGY 2 cut(s) 2471, 2941
XcmI CCANNNNNNNNNTGG 4 cut(s) 181, 557, 692, 817
XmnI GAANNNNTTC 2 cut(s) 228, 2451
XspI CTAG 7 cut(s) 350, 362, 1520, 1965, 3126, 3320, 3332
ZraI GACGTC 1 cut(s) 81
ZrmI AGTACT 2 cut(s) 600, 2827
Zsp2I ATGCAT 3 cut(s) 1198, 1957, 2350
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.