Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0002511

Physical Location & Seq

Genomic Coordinates Forward (+)

47254646 .. 47287699

Gene Structure 33054 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0356500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3399 bp

ATGGCGTTGAGCACCCAAGTTAGAGCCTCCACAGGTTCAGCTTTCCCATGGAAATACGACGTGTTTTTGAGCTTTAGAGGCGAAGACACCCGAAGGGGCTTCACAGATCACTTATACGACAAGTTGCAGTGGCGAGGAATCAGGAGTTTCCGGGACGATCCAGAACTTGAAAAAGGCACAGCCATCTCTTCGGAGCTCCTCTCAGCAATCGAGCAATCCAGATTTGCGATCGTTGTTCTTTCGCCAAACTATGCTTCTTCCACGTGGTGTTTGCTTGAACTGTCTAAGATTTTTGAATGCATGGAAGAGAGGGGGACAATTTTACCAATCTTTTATGAGGTGGACCCGTCTCATGTGCGACATCAAAGGGGCAGCTTTGCTGAAGCGTTCGATGAACATGAAGAGAAACTTGGGGAAGGTAATAAGGAGGTGGAAGTGTGGAGAGATGCTTTAACAAAAGTAGCCAATCTCGCTGGGTGGACTTCAAAGAATTATAGGTATGAAACAGAGCTTATCAGAGAGATTGTGCAAGCACTGTGGAGCAAAGTGCATCCTAGCCTGACAGTATTTGGTTCCTCAGAGAAGTTAGTTGGAATGGATACTAAGCTGGAGGAAATAGATGTTCTTTTAGATAAAGAAGCAAATGATGTTCGCTTTATAGGGATATGGGGGATGGGTGGGGTGGGTAAGACCACCCTTGCTAGAGTGGTGTATGAGAAAATTTCTCATCATTTTGAAGTTTGCATCTTTCTTGCTAATGTCAGAGAGGTCTCCGCAACCCATGGTCTAGTTCATCTACAAAAACAAATTCTTTCCCAAATCTTGAAGGAAGAAAATGTTCTAGTATGGGATGTTTATAGTGGAATCACTATGACAAAGAGATGTTTACGTAATAAAGCAGTTCTTCTAGTTCTTGACGATGTGGATCAATCAGAGCAACTGGAAAACTTAGGGGGAGAAAAAGATTGGTTTGGTTTGAGGAGTAGAATCATCATTACAACCAGAAATCGACATGTACTAGTCACACATGGTATAGAAAAACCATATGAGGTGAGGGGATTAAACACAGATGAAGCCCTTCAGCTTTTTAGTTGGAAAGCCTTTAGGAAATATGAGCCAGAAGAAGATTATGCAGACCACTCGAAGAGTTTCGTTAGCTATGCTAAGGGTCTTCCCTTAGCTCTTAAAACTTTGGGGTCTTTCTTGTATAAAAGAAGTCCAGATGCATGGACTTCTGCATTGAAAAAACTACGGAATACTCCCAACAGAACAGTTTTTGATTTGCTAAAAGTAAGTTATGATGGACTTGATGAAATGGAGAAGAAAATTTTTCTGGACATTACATGTTTTTCTTCGGAATGTGAAGCCAAGTTTTTTATTGAACTACTATACAGTTTTGACATGTGCACTCGTATTGCAATAGATGTTCTTGTTGAGAAATCTCTCTTAACTATTTCATCAGACAATGAAATAGGTATACATGATTTGATACAAGAAATGGGATGTGAAATTGTACGACAAGAGTCGTATGAAGAGCCTGGTGGACGCAGTCGGTTGGGGCTTCGCAAAGACATTTTTCATGTATTCACAAAGAATACGGCAACAGAAGCCATTGAAGGCATATTCTTACACTTGCATGAATTAGAAGAGGCAGACTGGAATCTTGAAGCCTTATCCAAAATGCGTAAACTGAAGCTGCTCTACATTCATAATTTGAGGCTTTCTCTTGGCCCCAAATATCTTCCTAATTCCTTGAGATTTCTGAATTGGAGTTGGTATCCTTCAAAATCTCTACCACCAGGTTTTCAGCCAGATGAACTTACAGAACTTAGATTGGTTCATAGCAACGTTGATCACCTCTGGAATGGAATAAAATACTTGGGTAAGTTGAAATCTATCGATCTTAGTCACTCCATAAACTTGACAAGGACCCCAGATTTCACAGGTATTCAAAACCTTGAGAGGTTGGTTCTTGAAGGTTGTACGAATTTAGTTAAGATTCATCCATCCATTGCATTGCTCAAGAGACTCAAAATTTGGAATTTTAGATACTGCAAAAGTATCAAGAATCTACCAAGTGAAGTAAAAATGGAATTTCTTGAAACTTTTGATGTAACTGGCTGCTCAAAACTGAAAATGATTCCAGAATTTGCAGGGGAAATGAAAAGATTTTCAAAGCTTTCTTTAAGTGGGACTGCTCTTGAGAAACTGCCTTCATCAATTGAGCGCTTCAGTGAGAGTTTGGAGGAGCTTGATTTGAGTGGAATTGTTACAAGAGAGCTGCCATACTCCATTTTTCTTATGCAGAATCTCAGAGTATCATCTTTTGGCTTATTTCCAAGAAAGAGTCCTCACCCTTTGGTTCCTTTGTTAGCTTCTTTGAAGCATTTGTCTTCATTGACGACATTAAATCTTAATGACTGTAATCTCAGTGAAGGAGAAATTCCCAATGATATTGGTTCTCTGTCCTCCTTAGAGAGATTGAAACTCAGAGGAAACAATTTTGTTAGCCTTCCAGCGAGCATTCATTTGCTTTCTAAGCTTCATGAGATTAACGTGGAGAATTGCAAAAGGCTCCAACAATTGCCAGACCTTCCATTAAACAACTGTTTAAAAGTAAGAACCAACAATTGTACTTCCTTACAAGTGTTACCAGTTCCATCAGATTTGTGCAAATTATGGAGATTTTCACTCAGTATCACCAATTGCCCCAACATTGATGGCAATCAAGGTTCTAGTCATTTCTTATATTCAATGCTAAAGCGTTGGCTTGAGGAAACCCCTGATGATTGTAAGGATAAGTACGACATTTATATTACTGGAAGTGAAATTCCCGACTTGTTCAGTAATCAAAATGTGGGAAACTCCATAACTGAAACTGTTGAACGTAATAGCAAGTGGATTGGGATTGTTGTATGTTCTTTAATTGCACCTCAATTCAATCCGTCTGAAGATCTTGCACCTTTTGACCATTTAGATTGTTGCTGGAACGAAGATGGCCCTGGCATTTACGACGGTTGGGGTTACGTCAGTTTGCCAACCAACCAAATTACGTCGGATCACCTTTGGTTACAATTTTTTTGTAGGCATCACTGGGATTATCTGGGGGACAATCGCAATGAGGTCAAGTTTACTATCAAAGCCTATTCAGCTATAGGATACCACAGTTTCAGGGAGGTGAAGAGGAAGGTGAAGAAATGTGGGGCCCGTGCACTGTACGAGCACGACATGGAAGAGATCATCAGCAAAATGAACCAATCCAACGACAACATTTCTATTTACGAGGCTACCCGTTCTGATTGCGCATATGAAAGTGGTGGCATTGGTAACAGAACAAACAAGGCAGCAACGAGCAGAAGTGGTGGCTCCGATGAAGAATATTACTCTGCAGAAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0002791 GO:0002792 GO:0002793 GO:0003674 GO:0005096 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0008047 GO:0008150 GO:0010646 GO:0010648 GO:0010817 GO:0016020 GO:0017016 GO:0017137 GO:0017157 GO:0019899 GO:0019905 GO:0023051 GO:0023057 GO:0030234 GO:0030695 GO:0031267 GO:0032879 GO:0032880 GO:0033500 GO:0042592 GO:0042593 GO:0043085 GO:0043087 GO:0043547 GO:0044093 GO:0044424 GO:0044464 GO:0046676 GO:0046883 GO:0046888 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048878 GO:0050708 GO:0050709 GO:0050714 GO:0050789 GO:0050790 GO:0050794 GO:0050796 GO:0051020 GO:0051046 GO:0051047 GO:0051048 GO:0051049 GO:0051050 GO:0051051 GO:0051222 GO:0051223 GO:0051224 GO:0051336 GO:0051345 GO:0060589 GO:0060627 GO:0065007 GO:0065008 GO:0065009 GO:0070201 GO:0071944 GO:0090087 GO:0090276 GO:0090278 GO:0098772 GO:1903530 GO:1903531 GO:1903532 GO:1904950 GO:1904951

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANAPC4_WD40 Synaptobrevin

Protein Analysis

1132

Amino Acids

129.36

Weight (kDa)

5.95

Isoelectric Point (pI)

40.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TIR	PF01582	18 - 198	1.2e-55	TIR domain
TIR_2	PF13676	21 - 117	2.3e-16	TIR domain
NB-ARC	PF00931	201 - 370	8.7e-26	NB-ARC domain
ATPase_2	PF01637	202 - 314	9.6e-06	ATPase domain predominantly from Archaea
NACHT	PF05729	222 - 363	1.8e-07	NACHT domain
WHD_ROQ1	PF23282	438 - 509	1.2e-13	Disease resistance protein Roq1-like, winged-helix domain
LRR_13	PF23286	700 - 892	1.3e-10	Disease resistance protein RPS4B-like, leucine-rich repeats
LRR_14	PF23598	792 - 863	1.3e-07	Leucine-rich repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002511)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05570 AT5G05570
fragaria_vesca	FvH4_6g11290 FvH4_6g11290 FvH4_6g11290 FvH4_7g24600 FvH4_7g24600
malus_domestica	MD01G1154200.v1.1 MD04G1155600.v1.1 MD07G1223200.v1.1 MD12G1168800.v1.1
prunus_persica	Prupe.2G251300_v2.0.a1 Prupe.6G279100_v2.0.a1 Prupe.6G279100_v2.0.a1
pyrus_communis	pycom01g17150 pycom04g14030 pycom12g16030
rosa_chinensis	RchiOBHm_Chr1g0370431 RchiOBHm_Chr3g0462831
rosa_laevigata	RLG00000024829 RLG00000027044
rosa_multiflora	Rmu_sc0000766.1_g000011 Rmu_sc0005656.1_g000008 Rmu_sc0035228.1_g000001
rosa_roxburghii	Rroxscaffold_4G00286580 Rroxscaffold_6G00417170
rosa_rugosa	Rorug01G0356400 Rorug01G0356500 Rorug01G0356600 Rorug03G0059500 Rorug03G0059500
rosa_samantha	Rh1AG364900 Rh1BG328100 Rh1CG341100 Rh1DG358400 Rh3AG117600 Rh3BG121400 Rh3CG124300 Rh3DG123000
rosa_wichuraiana	Rw1G032160 Rw3G009970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	3304
AccI	GTMKAC	1 cut(s)	1477
AciI	CCGC	1 cut(s)	774
AclI	AACGTT	1 cut(s)	1848
AclWI	GGATC	3 cut(s)	152, 933, 3066
AcuI	CTGAAG	5 cut(s)	402, 1064, 1712, 2215, 2970
AcvI	CACGTG	1 cut(s)	264
AdeI	CACNNNGTG	1 cut(s)	267
AfaI	GTAC	6 cut(s)	1017, 1515, 1984, 2635, 2804, 3218
AfeI	AGCGCT	1 cut(s)	2228
AflIII	ACRYGT	4 cut(s)	60, 1012, 1343, 1401
AhlI	ACTAGT	1 cut(s)	1018
AjiI	CACGTC	1 cut(s)	61
AjnI	CCWGG	3 cut(s)	1537, 1798, 3001
AjuI	GAANNNNNNNTTGG	4 cut(s)	238, 270, 393, 425
Alw21I	GWGCWC	5 cut(s)	14, 198, 1409, 3214, 3225
Alw26I	GTCTC	3 cut(s)	354, 775, 2020
Alw44I	GTGCAC	2 cut(s)	1405, 3210
AlwI	GGATC	3 cut(s)	152, 933, 3066
Aor51HI	AGCGCT	1 cut(s)	2228
AoxI	GGCC	3 cut(s)	1729, 2998, 3204
ApaI	GGGCCC	1 cut(s)	3208
ApaLI	GTGCAC	2 cut(s)	1405, 3210
ApeKI	GCWGC	5 cut(s)	372, 1696, 2121, 2281, 3344
ArsI	GACNNNNNNTTYG	2 cut(s)	2019, 2051
Asp700I	GAANNNNTTC	3 cut(s)	837, 1077, 1148
AspLEI	GCGC	2 cut(s)	2229, 3305
AspS9I	GGNCC	6 cut(s)	343, 1730, 1929, 2999, 3204, 3205
AsuC2I	CCSGG	1 cut(s)	152
AsuHPI	GGTGA	7 cut(s)	1063, 1847, 2345, 2692, 3053, 3190, 3202
AvaII	GGWCC	2 cut(s)	343, 1929
BaeGI	GKGCMC	3 cut(s)	1409, 3208, 3214
BaeI	ACNNNNGTAYC	2 cut(s)	3151, 3184
BanII	GRGCYC	2 cut(s)	198, 3208
BarI	GAAGNNNNNNTAC	2 cut(s)	1685, 1717
BbrPI	CACGTG	1 cut(s)	264
BbsI	GAAGAC	3 cut(s)	90, 1163, 2385
Bbv12I	GWGCWC	5 cut(s)	14, 198, 1409, 3214, 3225
BbvI	GCAGC	5 cut(s)	384, 1683, 2108, 2268, 3356
BccI	CCATC	7 cut(s)	191, 667, 1295, 2014, 2668, 2714, 2990
BceAI	ACGGC	1 cut(s)	1614
BcgI	CGANNNNNNTGC	2 cut(s)	1122, 1156
BciT130I	CCWGG	3 cut(s)	1539, 1800, 3003
BciVI	GTATCC	3 cut(s)	592, 1788, 3152
BclI	TGATCA	1 cut(s)	1852
BcnI	CCSGG	1 cut(s)	152
BcoDI	GTCTC	3 cut(s)	354, 775, 2020
BcuI	ACTAGT	1 cut(s)	1018
BfaI	CTAG	7 cut(s)	555, 702, 788, 842, 908, 1019, 2736
BfmI	CTRYAG	2 cut(s)	3153, 3387
BfoI	RGCGCY	1 cut(s)	2230
BfuI	GTATCC	3 cut(s)	592, 1788, 3152
BglII	AGATCT	1 cut(s)	2953
BisI	GCNGC	5 cut(s)	373, 1697, 2122, 2282, 3345
BlsI	GCNGC	5 cut(s)	374, 1698, 2123, 2283, 3346
Bme1390I	CCNGG	4 cut(s)	152, 1539, 1800, 3003
Bme18I	GGWCC	2 cut(s)	343, 1929
BmgBI	CACGTC	1 cut(s)	61
BmgT120I	GGNCC	6 cut(s)	343, 1730, 1929, 2999, 3204, 3205
BmiI	GGNNCC	9 cut(s)	345, 574, 1732, 1931, 2364, 2576, 3205, 3206, 3367
BmrFI	CCNGG	4 cut(s)	152, 1539, 1800, 3003
BmrI	ACTGGG	1 cut(s)	3103
BmsI	GCATC	5 cut(s)	436, 559, 753, 1213, 3097
BmuI	ACTGGG	1 cut(s)	3103
BoxI	GACNNNNGTC	1 cut(s)	1522
BpiI	GAAGAC	3 cut(s)	90, 1163, 2385
BplI	GAGNNNNNCTC	4 cut(s)	185, 217, 1708, 1740
BpmI	CTGGAG	1 cut(s)	629
Bpu10I	CCTNAGC	2 cut(s)	1164, 1177
BpuEI	CTTGAG	5 cut(s)	1774, 1979, 2006, 2222, 2792
BpuMI	CCSGG	1 cut(s)	152
Bsa29I	ATCGAT	1 cut(s)	1899
BsaAI	YACGTR	2 cut(s)	264, 890
BsaBI	GATNNNNATC	2 cut(s)	924, 2724
BsaI	GGTCTC	1 cut(s)	775
BsaJI	CCNNGG	3 cut(s)	47, 781, 3001
Bse1I	ACTGG	6 cut(s)	945, 1661, 2122, 2654, 2824, 3098
Bse3DI	GCAATG	3 cut(s)	2010, 2015, 3124
Bse8I	GATNNNNATC	2 cut(s)	924, 2724
BseBI	CCWGG	3 cut(s)	1539, 1800, 3003
BseCI	ATCGAT	1 cut(s)	1899
BseDI	CCNNGG	3 cut(s)	47, 781, 3001
BseGI	GGATG	6 cut(s)	550, 678, 856, 1508, 2002, 2006
BseJI	GATNNNNATC	2 cut(s)	924, 2724
BseMI	GCAATG	3 cut(s)	2010, 2015, 3124
BseMII	CTCAG	6 cut(s)	216, 591, 2326, 2443, 2503, 2707
BseNI	ACTGG	6 cut(s)	945, 1661, 2122, 2654, 2824, 3098
BseRI	GAGGAG	3 cut(s)	188, 994, 2261
BseSI	GKGCMC	3 cut(s)	1409, 3208, 3214
BseXI	GCAGC	5 cut(s)	384, 1683, 2108, 2268, 3356
BseYI	CCCAGC	1 cut(s)	473
Bsh1285I	CGRYCG	1 cut(s)	231
BshFI	GGCC	3 cut(s)	1731, 3000, 3206
BshVI	ATCGAT	1 cut(s)	1899
BsiEI	CGRYCG	1 cut(s)	231
BsiHKAI	GWGCWC	5 cut(s)	14, 198, 1409, 3214, 3225
BsiSI	CCGG	1 cut(s)	151
BslFI	GGGAC	4 cut(s)	167, 328, 2206, 3122
BsmAI	GTCTC	3 cut(s)	354, 775, 2020
BsmBI	CGTCTC	1 cut(s)	354
BsmFI	GGGAC	4 cut(s)	167, 328, 2206, 3122
BsmI	GAATGC	2 cut(s)	302, 2523
BsnI	GGCC	3 cut(s)	1731, 3000, 3206
Bso31I	GGTCTC	1 cut(s)	775
Bsp120I	GGGCCC	1 cut(s)	3204
Bsp1286I	GDGCHC	6 cut(s)	14, 198, 1409, 3208, 3214, 3225
Bsp143I	GATC	9 cut(s)	106, 157, 228, 925, 1852, 1900, 2953, 3058, 3237
Bsp19I	CCATGG	2 cut(s)	47, 781
BspACI	CCGC	1 cut(s)	774
BspANI	GGCC	3 cut(s)	1731, 3000, 3206
BspCNI	CTCAG	6 cut(s)	215, 590, 2325, 2442, 2502, 2706
BspDI	ATCGAT	1 cut(s)	1899
BspHI	TCATGA	1 cut(s)	2545
BspLI	GGNNCC	9 cut(s)	345, 574, 1732, 1931, 2364, 2576, 3205, 3206, 3367
BspMAI	CTGCAG	1 cut(s)	3391
BspPI	GGATC	3 cut(s)	152, 933, 3066
BspQI	GCTCTTC	1 cut(s)	1527
BspTNI	GGTCTC	1 cut(s)	775
BsrDI	GCAATG	3 cut(s)	2010, 2015, 3124
BsrI	ACTGG	6 cut(s)	945, 1661, 2122, 2654, 2824, 3098
BssECI	CCNNGG	3 cut(s)	47, 781, 3001
BssMI	GATC	9 cut(s)	106, 157, 228, 925, 1852, 1900, 2953, 3058, 3237
BssNAI	GTATAC	1 cut(s)	1478
BssT1I	CCWWGG	2 cut(s)	47, 781
Bst1107I	GTATAC	1 cut(s)	1478
Bst2UI	CCWGG	3 cut(s)	1539, 1800, 3003
Bst6I	CTCTTC	8 cut(s)	193, 300, 396, 1139, 1527, 1641, 3176, 3228
BstBAI	YACGTR	2 cut(s)	264, 890
BstC8I	GCNNGC	2 cut(s)	531, 2521
BstDSI	CCRYGG	2 cut(s)	47, 781
BstF5I	GGATG	6 cut(s)	550, 678, 856, 1508, 2002, 2006
BstH2I	RGCGCY	1 cut(s)	2230
BstHHI	GCGC	2 cut(s)	2229, 3305
BstKTI	GATC	9 cut(s)	109, 160, 231, 928, 1855, 1903, 2956, 3061, 3240
BstMAI	GTCTC	3 cut(s)	354, 775, 2020
BstMBI	GATC	9 cut(s)	106, 157, 228, 925, 1852, 1900, 2953, 3058, 3237
BstMCI	CGRYCG	1 cut(s)	231
BstMWI	GCNNNNNNNGC	5 cut(s)	78, 470, 1607, 2539, 3149
BstNI	CCWGG	3 cut(s)	1539, 1800, 3003
BstNSI	RCATGY	3 cut(s)	1016, 1347, 1405
BstPAI	GACNNNNGTC	1 cut(s)	1522
BstSCI	CCNGG	4 cut(s)	150, 1537, 1798, 3001
BstSFI	CTRYAG	2 cut(s)	3153, 3387
BstSLI	GKGCMC	3 cut(s)	1409, 3208, 3214
BstSNI	TACGTA	1 cut(s)	890
BstV1I	GCAGC	5 cut(s)	384, 1683, 2108, 2268, 3356
BstV2I	GAAGAC	3 cut(s)	90, 1163, 2385
BstX2I	RGATCY	1 cut(s)	2953
BstXI	CCANNNNNNTGG	1 cut(s)	1227
BstYI	RGATCY	1 cut(s)	2953
BstZ17I	GTATAC	1 cut(s)	1478
Bsu15I	ATCGAT	1 cut(s)	1899
BsuI	GTATCC	3 cut(s)	592, 1788, 3152
BsuRI	GGCC	3 cut(s)	1731, 3000, 3206
BsuTUI	ATCGAT	1 cut(s)	1899
BtgI	CCRYGG	2 cut(s)	47, 781
BtrI	CACGTC	1 cut(s)	61
BtsCI	GGATG	6 cut(s)	550, 678, 856, 1508, 2002, 2006
BtsI	GCAGTG	1 cut(s)	134
BtsIMutI	CAGTG	6 cut(s)	134, 533, 2239, 2437, 3091, 3212
Cac8I	GCNNGC	2 cut(s)	531, 2521
CciI	TCATGA	1 cut(s)	2545
CfoI	GCGC	2 cut(s)	2229, 3305
Cfr13I	GGNCC	6 cut(s)	343, 1730, 1929, 2999, 3204, 3205
ClaI	ATCGAT	1 cut(s)	1899
CseI	GACGC	1 cut(s)	1554
CsiI	ACCWGGT	1 cut(s)	1798
Csp6I	GTAC	6 cut(s)	1016, 1514, 1983, 2634, 2803, 3217
CspCI	CAANNNNNGTGG	2 cut(s)	518, 553
CviQI	GTAC	6 cut(s)	1016, 1514, 1983, 2634, 2803, 3217
DpnI	GATC	9 cut(s)	108, 159, 230, 927, 1854, 1902, 2955, 3060, 3239
DpnII	GATC	9 cut(s)	106, 157, 228, 925, 1852, 1900, 2953, 3058, 3237
DraI	TTTAAA	1 cut(s)	2613
DraIII	CACNNNGTG	1 cut(s)	267
Eam1104I	CTCTTC	8 cut(s)	193, 300, 396, 1139, 1527, 1641, 3176, 3228
EarI	CTCTTC	8 cut(s)	193, 300, 396, 1139, 1527, 1641, 3176, 3228
Ecl136II	GAGCTC	1 cut(s)	196
Eco105I	TACGTA	1 cut(s)	890
Eco130I	CCWWGG	2 cut(s)	47, 781
Eco24I	GRGCYC	2 cut(s)	198, 3208
Eco31I	GGTCTC	1 cut(s)	775
Eco47I	GGWCC	2 cut(s)	343, 1929
Eco47III	AGCGCT	1 cut(s)	2228
Eco53kI	GAGCTC	1 cut(s)	196
Eco57I	CTGAAG	5 cut(s)	402, 1064, 1712, 2215, 2970
Eco72I	CACGTG	1 cut(s)	264
EcoICRI	GAGCTC	1 cut(s)	196
EcoO109I	RGGNCCY	2 cut(s)	1929, 3204
EcoRII	CCWGG	3 cut(s)	1537, 1798, 3001
EcoT14I	CCWWGG	2 cut(s)	47, 781
EcoT22I	ATGCAT	2 cut(s)	302, 1228
EcoT38I	GRGCYC	2 cut(s)	198, 3208
ErhI	CCWWGG	2 cut(s)	47, 781
Esp3I	CGTCTC	1 cut(s)	354
FalI	AAGNNNNNCTT	4 cut(s)	393, 425, 888, 920
FaqI	GGGAC	4 cut(s)	167, 328, 2206, 3122
FauNDI	CATATG	2 cut(s)	1045, 3307
FbaI	TGATCA	1 cut(s)	1852
FblI	GTMKAC	1 cut(s)	1477
Fnu4HI	GCNGC	5 cut(s)	373, 1697, 2122, 2282, 3345
FokI	GGATG	6 cut(s)	537, 685, 863, 1515, 1989, 1993
FriOI	GRGCYC	2 cut(s)	198, 3208
Fsp4HI	GCNGC	5 cut(s)	373, 1697, 2122, 2282, 3345
FspBI	CTAG	7 cut(s)	555, 702, 788, 842, 908, 1019, 2736
FspI	TGCGCA	1 cut(s)	3304
GlaI	GCGC	2 cut(s)	2228, 3304
GluI	GCNGC	5 cut(s)	373, 1697, 2122, 2282, 3345
GsaI	CCCAGC	1 cut(s)	477
GsuI	CTGGAG	1 cut(s)	629
HaeII	RGCGCY	1 cut(s)	2230
HaeIII	GGCC	3 cut(s)	1731, 3000, 3206
HapII	CCGG	1 cut(s)	151
HgaI	GACGC	1 cut(s)	1554
HhaI	GCGC	2 cut(s)	2229, 3305
Hin6I	GCGC	2 cut(s)	2227, 3303
HinP1I	GCGC	2 cut(s)	2227, 3303
HindIII	AAGCTT	2 cut(s)	2177, 2540
HpaII	CCGG	1 cut(s)	151
HphI	GGTGA	7 cut(s)	1063, 1847, 2345, 2692, 3053, 3190, 3202
Hpy166II	GTNNAC	9 cut(s)	343, 480, 887, 1407, 1478, 1544, 1688, 3132, 3212
Hpy8I	GTNNAC	9 cut(s)	343, 480, 887, 1407, 1478, 1544, 1688, 3132, 3212
Hpy99I	CGWCG	3 cut(s)	62, 3017, 3058
HpyCH4IV	ACGT	8 cut(s)	60, 263, 889, 1848, 2556, 2887, 3027, 3053
HpyF10VI	GCNNNNNNNGC	5 cut(s)	78, 470, 1607, 2539, 3149
HpySE526I	ACGT	8 cut(s)	60, 263, 889, 1848, 2556, 2887, 3027, 3053
HspAI	GCGC	2 cut(s)	2227, 3303
Ksp22I	TGATCA	1 cut(s)	1852
Kzo9I	GATC	9 cut(s)	106, 157, 228, 925, 1852, 1900, 2953, 3058, 3237
LguI	GCTCTTC	1 cut(s)	1527
LmnI	GCTCC	6 cut(s)	193, 201, 540, 2248, 2580, 3371
Lsp1109I	GCAGC	5 cut(s)	384, 1683, 2108, 2268, 3356
LweI	GCATC	5 cut(s)	436, 559, 753, 1213, 3097
MabI	ACCWGGT	1 cut(s)	1798
MaeI	CTAG	7 cut(s)	555, 702, 788, 842, 908, 1019, 2736
MaeII	ACGT	8 cut(s)	60, 263, 889, 1848, 2556, 2887, 3027, 3053
MaeIII	GTNAC	8 cut(s)	1021, 1907, 2113, 2269, 2649, 3023, 3069, 3326
MalI	GATC	9 cut(s)	108, 159, 230, 927, 1854, 1902, 2955, 3060, 3239
MboI	GATC	9 cut(s)	106, 157, 228, 925, 1852, 1900, 2953, 3058, 3237
MfeI	CAATTG	4 cut(s)	2220, 2582, 2629, 2704
MflI	RGATCY	1 cut(s)	2953
MhlI	GDGCHC	6 cut(s)	14, 198, 1409, 3208, 3214, 3225
MlyI	GAGTC	3 cut(s)	1532, 2022, 2356
MmeI	TCCRAC	5 cut(s)	571, 1073, 2602, 3036, 3285
Mph1103I	ATGCAT	2 cut(s)	302, 1228
MroXI	GAANNNNTTC	3 cut(s)	837, 1077, 1148
MslI	CAYNNNNRTG	1 cut(s)	1635
MspI	CCGG	1 cut(s)	151
MspR9I	CCNGG	4 cut(s)	152, 1539, 1800, 3003
MunI	CAATTG	4 cut(s)	2220, 2582, 2629, 2704
Mva1269I	GAATGC	2 cut(s)	302, 2523
MvaI	CCWGG	3 cut(s)	1539, 1800, 3003
MwoI	GCNNNNNNNGC	5 cut(s)	78, 470, 1607, 2539, 3149
NciI	CCSGG	1 cut(s)	152
NcoI	CCATGG	2 cut(s)	47, 781
NdeI	CATATG	2 cut(s)	1045, 3307
NdeII	GATC	9 cut(s)	106, 157, 228, 925, 1852, 1900, 2953, 3058, 3237
NlaIV	GGNNCC	9 cut(s)	345, 574, 1732, 1931, 2364, 2576, 3205, 3206, 3367
NmuCI	GTSAC	2 cut(s)	1021, 1907
NsbI	TGCGCA	1 cut(s)	3304
NsiI	ATGCAT	2 cut(s)	302, 1228
NspI	RCATGY	3 cut(s)	1016, 1347, 1405
PagI	TCATGA	1 cut(s)	2545
PciI	ACATGT	3 cut(s)	1012, 1343, 1401
PciSI	GCTCTTC	1 cut(s)	1527
PctI	GAATGC	2 cut(s)	302, 2523
PdmI	GAANNNNTTC	3 cut(s)	837, 1077, 1148
PfeI	GAWTC	8 cut(s)	138, 864, 987, 1660, 1999, 2068, 2140, 2308
PflFI	GACNNNGTC	1 cut(s)	1548
PfoI	TCCNGGA	1 cut(s)	150
PkrI	GCNGC	5 cut(s)	374, 1698, 2123, 2283, 3346
Ple19I	CGATCG	1 cut(s)	231
PleI	GAGTC	3 cut(s)	1531, 2022, 2355
PmaCI	CACGTG	1 cut(s)	264
PmlI	CACGTG	1 cut(s)	264
PpsI	GAGTC	3 cut(s)	1531, 2022, 2355
Ppu21I	YACGTR	2 cut(s)	264, 890
PpuMI	RGGWCCY	1 cut(s)	1929
PscI	ACATGT	3 cut(s)	1012, 1343, 1401
PshAI	GACNNNNGTC	1 cut(s)	1522
Psp124BI	GAGCTC	1 cut(s)	198
Psp1406I	AACGTT	1 cut(s)	1848
Psp5II	RGGWCCY	1 cut(s)	1929
Psp6I	CCWGG	3 cut(s)	1537, 1798, 3001
PspCI	CACGTG	1 cut(s)	264
PspFI	CCCAGC	1 cut(s)	473
PspGI	CCWGG	3 cut(s)	1537, 1798, 3001
PspN4I	GGNNCC	9 cut(s)	345, 574, 1732, 1931, 2364, 2576, 3205, 3206, 3367
PspOMI	GGGCCC	1 cut(s)	3204
PspPI	GGNCC	6 cut(s)	343, 1730, 1929, 2999, 3204, 3205
PspPPI	RGGWCCY	1 cut(s)	1929
PstI	CTGCAG	1 cut(s)	3391
PsuI	RGATCY	1 cut(s)	2953
PsyI	GACNNNGTC	1 cut(s)	1548
PvuI	CGATCG	1 cut(s)	231
RsaI	GTAC	6 cut(s)	1017, 1515, 1984, 2635, 2804, 3218
RsaNI	GTAC	6 cut(s)	1016, 1514, 1983, 2634, 2803, 3217
RseI	CAYNNNNRTG	1 cut(s)	1635
SacI	GAGCTC	1 cut(s)	198
SapI	GCTCTTC	1 cut(s)	1527
SatI	GCNGC	5 cut(s)	373, 1697, 2122, 2282, 3345
Sau3AI	GATC	9 cut(s)	106, 157, 228, 925, 1852, 1900, 2953, 3058, 3237
Sau96I	GGNCC	6 cut(s)	343, 1730, 1929, 2999, 3204, 3205
SchI	GAGTC	3 cut(s)	1532, 2022, 2356
ScrFI	CCNGG	4 cut(s)	152, 1539, 1800, 3003
SduI	GDGCHC	6 cut(s)	14, 198, 1409, 3208, 3214, 3225
SexAI	ACCWGGT	1 cut(s)	1798
SfaNI	GCATC	5 cut(s)	436, 559, 753, 1213, 3097
SfcI	CTRYAG	2 cut(s)	3153, 3387
SinI	GGWCC	2 cut(s)	343, 1929
SmiMI	CAYNNNNRTG	1 cut(s)	1635
SmlI	CTYRAG	5 cut(s)	1753, 1958, 2021, 2201, 2771
SmoI	CTYRAG	5 cut(s)	1753, 1958, 2021, 2201, 2771
SnaBI	TACGTA	1 cut(s)	890
SpeI	ACTAGT	1 cut(s)	1018
SsiI	CCGC	1 cut(s)	774
SspI	AATATT	1 cut(s)	3380
SspMI	CTAG	7 cut(s)	555, 702, 788, 842, 908, 1019, 2736
SstI	GAGCTC	1 cut(s)	198
StyD4I	CCNGG	4 cut(s)	150, 1537, 1798, 3001
StyI	CCWWGG	2 cut(s)	47, 781
TaiI	ACGT	8 cut(s)	63, 266, 892, 1851, 2559, 2890, 3030, 3056
TaqI	TCGA	5 cut(s)	210, 390, 1009, 1142, 1899
TatI	WGTACW	2 cut(s)	1015, 2633
TfiI	GAWTC	8 cut(s)	138, 864, 987, 1660, 1999, 2068, 2140, 2308
TscAI	CASTG	6 cut(s)	134, 540, 2239, 2437, 3098, 3219
TseFI	GTSAC	2 cut(s)	1021, 1907
TseI	GCWGC	5 cut(s)	372, 1696, 2121, 2281, 3344
Tsp45I	GTSAC	2 cut(s)	1021, 1907
TspGWI	ACGGA	2 cut(s)	1267, 2934
TspRI	CASTG	6 cut(s)	134, 540, 2239, 2437, 3098, 3219
Tth111I	GACNNNGTC	1 cut(s)	1548
VneI	GTGCAC	2 cut(s)	1405, 3210
VpaK11BI	GGWCC	2 cut(s)	343, 1929
XceI	RCATGY	3 cut(s)	1016, 1347, 1405
XmiI	GTMKAC	1 cut(s)	1477
XmnI	GAANNNNTTC	3 cut(s)	837, 1077, 1148
XspI	CTAG	7 cut(s)	555, 702, 788, 842, 908, 1019, 2736
Zsp2I	ATGCAT	2 cut(s)	302, 1228

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.