Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0002511

Physical Location & Seq

Genomic Coordinates Forward (+)

7881650 .. 7931827

Gene Structure 50178 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000027044

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3288 bp

ATGGTGTCTATGGTGAAGTATGATGCTGAAGATCGAAAAATCAATTTACTGCTATATTATATTACTGCAAACTTCATAGCTGAAGCAGCTGGAATGTCATTGCCTGATAATCTTTCTGTTGTTGGAGTTCTCCATCAACCTAGTTCTCCGGGAAACAGACTGCTGATTGCATATGAGAATGGTCTGATTGTTCTCTGGGATGCTTTAGAAGATCGAGTTGTGCTTGTAAGAGGTTCCAAGGACCTGCAAGTGAAGGAAGAAACAGTCCATAATTCTTTTGAAGGCACAAGAACTGAGCTTACTGATGCTACATCAGTCAGCAAACAGGTGGAGAAAGAGATAAGCTCTCTTTGTTGGGTATGCGATAATGGGTCAAGTCTTGCTGTTGGCTATGTAGATGGTGATATAATGTTTTGGGATATATCAACTGCTGAGTCTACCAAGGATCATAGATCTAAAAAGTTAGCTAACAATGTTGCGAAGCTAGAGTTGTCATCAGATGACAAGAGACTCCCTGTCATAGTTTTACACTGGTCTGCAAATAGGTTAAGTCATCATCCTAGGGGCCAACTCTTTGTTTATGGAGGTGGAGGAATTGGGTCTGAAGAAGTTCTCACGGTTCTGAGCATGGATTGGTCTTCAGGAATAGAAAGTCTGAAATGCATAGGTCGTGTAGACCTTACACTTGTTGGTTCATTTGCAGATATGGTTTTACTTCCGGCTGCTGGTGCAATGGAGAACGGTGACACATTGCTATTCACTTTGACAAATCAGGGACAACTGCATGTCTATGACAAGGCTTGCTGGTCTGCCTTAATGTCTTACCAAAAGAAAAAGACTGATGGGACTGCAGTGCAATATCCTATGTTTATACCTACTACTGAACCGTGTATGACAGTGGCAAAGCTTGCTTTGGTGGATAGAGATGGGAAATACTCCCCAGCTCTGTCCAAGGAAGTTTCAGTTGACAAGTCTAATGCGGAACACACTTTGAAGAAGGGGGGTGCAAAGTGGCCTTTGACTGGTGGTGTTCCCAGCCAACTTTCTGATGCTGAAAATTTTCATGTCGAGAGACTATATGTAGCAGGATATCAAGATGGATCTGTTCGAATATGGGATGCCACCTATCCAACTCCCTCGCTTATATATGCTATAGGTCCGGAGGTAAAGGGCATCAGATCTACAGGTGCAAATGGAACGGTCTCAGCATTGGAATTTTGTTCTCTTACTTTAAAATTAGCTATTGGTGATGTGTGTGGTCTGGTCCGTCTATATAAACTAATAGGGGGTTCAGACGAGACAGAGTTGCACTTTGTGACAAAAACAGAGAAGGAAGTTTATACTTCACAACAAGGAAATGGGCCTCGGTGCACAGCTGTGTTTTCTATTCTTGATTCTCCTATATCCATACTACAATATGCAAATTTTGGAGCAAGACTCACTGTGGGATTTGAATGTGGCCGGGTTGCAATGCTTGATGTTAGTAGATCGTCAGTTTTGTTTCTTACAGACAGTGTATCCAACTCAAGTTCCCCAGTCATCTGTCTGTCTGTGAAATCATTATCAGATACTAATAGCTTATCACAGAGCCCAAAGGGCTCTGAATCCAAGAATTCGACTGATCCTCAAAATGGAATGAATCCAAAGGATTCTGAACCCAAAACTTTAAGTGATTCTGGAAATGGGTTGGCAGTCCCAAAGGACTCCGAATCCAAGAATGTGTCTGACCCTGAACATGGAATGAGTGTAAAAGATCCTGAATTTAAGACTTTGAGTGATTCTGGAAATGGGTTGGCAATCCCAGAGAACTCTGAATTCAAGAATGTGGCTGATCCTGAACCTGGAATGAGTGTAAAAGATCCTGAATCCCAGACTTTGGGCGATTCTGGAAATGGGTTGGCAATCCCAAAAGACTCTGAATCCAAGAATGTGACTGATCCTGAACATGGAAAGAGTTTAAAAGATCCTGAATCCAAGACTTTGAGTGATTCTGAAAATGGGTTGGCGTTCATTATGACCAGAAATGCACATTTTGTTATTTTAGATAGTGCCACTGGCAATATGATCAGGTCTTGGCCCATGCATCCAAAAATGGATTCTACTGCGATTTCGATGTACATTATAGAGAATGGTGATGTTTTATTTGATTTGTCGAGTGCAAAAAAGGATTCTTTAGACTTACCTCAGAAAGGCGTAGCTAAACATGATGACGTACCACCTAATGCTGACTCTGGAGGGACACAGCTTGTAGTTGACCAGGATACCTCCACCAAAACTGCATATTTTTTGCAGAGATCGGTGAACATGTGTGTTTTACTTTGTTGTGACTACACATTGCACTTATGTTCATTGAAGTCTCTGCTTGAGGGTGACAATAACTGCATTGTGAAGGTGAATCTTGTAAAACCGTGTTGTTGGACTACAATCTTCAAAAAAGATGGAAAAGACAGTGGATTGGTTATACTAAATCAGACAGGAGTCTTTGAGATCAGGTCTTTTCCAAATCTTGAACTGGTGAGAGATATATCATTAATGACGATTCTAAGATGGAACTTCGTGATCAACATGGATAAGACATTCTGTTCCTCTGATAGTGGGCAAATGATTCTGGTACATGGGTGTGAATTAGCTTTTGTATCTCTTTTGGCCTACGAAGATGACTTCAGGATTTCGGAGTCCTTCCCTTGTCTTCATGATAAAGTGCTTGCAGCTGCTACAGATGTCATTGCTGATTTATCTCAAAGACAGAAACAGAGTGCTGCCCATAGGATTTTAGGAGGTATCATTAAGGGCTTAAAAACTAGTAAAACGGATCAAAACATGGACCCGACTGGAAATCATGAAAAATATCGTGCAAATTTGGAGAGCTTATTTTCAAATCCCCCATTCTTAAAACCTTCCACAGATGTGAAGGATAGCCAAGAACCCGTGGTGCTTAACCTAGATGATATTGTAATTGATGGCCCTATTACTGTCTTGCCTAAAGATCCAAACAACAAGAATGAAAAGAAAGACAAGGGATCAGAGAAGAAAAAGTTATTTGAAGGCGCAACTAGTGGTACAAAGCCAAAAATGAGGACAGCTGCCGAAATCAAGGCTAAATATAGAGAAACTGGGGATGTCTCTGCAGCAGCTGCACGTGCAAGAGATATGCTTGCCGAACGTGGGGAAAAACTTGAGAAACTCAGAGAAAACACAGAAGAACTATCGAGTGGAGCTCAAGACTTCGCATCAATGGCAAAGGAACTCGCCAAGAGAATGGAGAATCGTAAATGGTGGCACATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0002791 GO:0002792 GO:0002793 GO:0003674 GO:0005096 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0008047 GO:0008150 GO:0010646 GO:0010648 GO:0010817 GO:0016020 GO:0017016 GO:0017137 GO:0017157 GO:0019899 GO:0019905 GO:0023051 GO:0023057 GO:0030234 GO:0030695 GO:0031267 GO:0032879 GO:0032880 GO:0033500 GO:0042592 GO:0042593 GO:0043085 GO:0043087 GO:0043547 GO:0044093 GO:0044424 GO:0044464 GO:0046676 GO:0046883 GO:0046888 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048878 GO:0050708 GO:0050709 GO:0050714 GO:0050789 GO:0050790 GO:0050794 GO:0050796 GO:0051020 GO:0051046 GO:0051047 GO:0051048 GO:0051049 GO:0051050 GO:0051051 GO:0051222 GO:0051223 GO:0051224 GO:0051336 GO:0051345 GO:0060589 GO:0060627 GO:0065007 GO:0065008 GO:0065009 GO:0070201 GO:0071944 GO:0090087 GO:0090276 GO:0090278 GO:0098772 GO:1903530 GO:1903531 GO:1903532 GO:1904950 GO:1904951

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANAPC4_WD40 Synaptobrevin

Protein Analysis

1096

Amino Acids

119.44

Weight (kDa)

5.42

Isoelectric Point (pI)

34.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Synaptobrevin	PF00957	1050 - 1092	1.8e-06	Synaptobrevin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0002511)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05570 AT5G05570
fragaria_vesca	FvH4_6g11290 FvH4_6g11290 FvH4_6g11290 FvH4_7g24600 FvH4_7g24600
malus_domestica	MD01G1154200.v1.1 MD04G1155600.v1.1 MD07G1223200.v1.1 MD12G1168800.v1.1
prunus_persica	Prupe.2G251300_v2.0.a1 Prupe.6G279100_v2.0.a1 Prupe.6G279100_v2.0.a1
pyrus_communis	pycom01g17150 pycom04g14030 pycom12g16030
rosa_chinensis	RchiOBHm_Chr1g0370431 RchiOBHm_Chr3g0462831
rosa_laevigata	RLG00000024829 RLG00000027044
rosa_multiflora	Rmu_sc0000766.1_g000011 Rmu_sc0005656.1_g000008 Rmu_sc0035228.1_g000001
rosa_roxburghii	Rroxscaffold_4G00286580 Rroxscaffold_6G00417170
rosa_rugosa	Rorug01G0356400 Rorug01G0356500 Rorug01G0356600 Rorug03G0059500 Rorug03G0059500
rosa_samantha	Rh1AG364900 Rh1BG328100 Rh1CG341100 Rh1DG358400 Rh3AG117600 Rh3BG121400 Rh3CG124300 Rh3DG123000
rosa_wichuraiana	Rw1G032160 Rw3G009970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	252
AccB7I	CCANNNNNTGG	1 cut(s)	1876
AccI	GTMKAC	2 cut(s)	437, 675
AccIII	TCCGGA	1 cut(s)	1159
AciI	CCGC	1 cut(s)	980
AcoI	YGGCCR	1 cut(s)	1459
AcsI	RAATTY	7 cut(s)	1057, 1214, 1423, 1612, 1760, 1814, 2857
AcuI	CTGAAG	5 cut(s)	48, 102, 624, 624, 2647
AcvI	CACGTG	1 cut(s)	3140
AdeI	CACNNNGTG	1 cut(s)	1315
AfaI	GTAC	4 cut(s)	2117, 2214, 2613, 3061
AfiI	CCNNNNNNNGG	9 cut(s)	725, 1022, 1631, 1736, 1841, 1876, 1946, 2189, 3165
AflIII	ACRYGT	1 cut(s)	2304
AgsI	TTSAA	9 cut(s)	281, 994, 1454, 1819, 2353, 2431, 2510, 2877, 3044
AhdI	GACNNNNNGTC	1 cut(s)	515
AhlI	ACTAGT	2 cut(s)	2801, 3053
AjnI	CCWGG	2 cut(s)	1840, 2256
AjuI	GAANNNNNNNTTGG	2 cut(s)	2080, 2112
AleI	CACNNNNGTG	2 cut(s)	1376, 2906
Alw21I	GWGCWC	2 cut(s)	1373, 3220
Alw26I	GTCTC	6 cut(s)	502, 1066, 1207, 1292, 2361, 3127
Alw44I	GTGCAC	1 cut(s)	1369
AlwNI	CAGNNNCTG	1 cut(s)	3134
Aor13HI	TCCGGA	1 cut(s)	1159
AoxI	GGCC	7 cut(s)	565, 1013, 1361, 1459, 2075, 2646, 2962
ApaLI	GTGCAC	1 cut(s)	1369
ApeKI	GCWGC	9 cut(s)	86, 722, 2708, 2711, 2759, 3083, 3128, 3131, 3134
ApoI	RAATTY	7 cut(s)	1057, 1214, 1423, 1612, 1760, 1814, 2857
AseI	ATTAAT	1 cut(s)	2531
Asp700I	GAANNNNTTC	2 cut(s)	609, 1059
AspA2I	CCTAGG	1 cut(s)	560
AspLEI	GCGC	1 cut(s)	3050
AspS9I	GGNCC	8 cut(s)	241, 565, 1157, 1264, 1361, 2076, 2824, 2963
AsuC2I	CCSGG	2 cut(s)	150, 1463
AsuHPI	GGTGA	9 cut(s)	25, 413, 755, 1259, 2144, 2311, 2381, 2404, 2527
AsuII	TTCGAA	1 cut(s)	1108
AvaII	GGWCC	4 cut(s)	241, 1157, 1264, 2824
AvrII	CCTAGG	1 cut(s)	560
BaeGI	GKGCMC	1 cut(s)	1373
BaeI	ACNNNNGTAYC	2 cut(s)	2603, 2636
BanII	GRGCYC	3 cut(s)	1592, 1601, 3220
BbrPI	CACGTG	1 cut(s)	3140
BbsI	GAAGAC	2 cut(s)	630, 2681
Bbv12I	GWGCWC	2 cut(s)	1373, 3220
BbvI	GCAGC	9 cut(s)	98, 709, 2698, 2720, 2746, 3070, 3121, 3140, 3143
BccI	CCATC	8 cut(s)	141, 392, 836, 920, 1091, 2432, 2541, 2954
BciT130I	CCWGG	2 cut(s)	1842, 2258
BciVI	GTATCC	2 cut(s)	1528, 2254
BclI	TGATCA	2 cut(s)	2064, 2559
BcnI	CCSGG	2 cut(s)	150, 1463
BcoDI	GTCTC	6 cut(s)	502, 1066, 1207, 1292, 2361, 3127
BcuI	ACTAGT	2 cut(s)	2801, 3053
BfaI	CTAG	6 cut(s)	141, 485, 561, 2802, 2942, 3054
BfmI	CTRYAG	5 cut(s)	849, 1152, 1182, 2715, 3126
BfuAI	ACCTGC	1 cut(s)	252
BfuI	GTATCC	2 cut(s)	1528, 2254
BglI	GCCNNNNNGGC	1 cut(s)	1596
BglII	AGATCT	2 cut(s)	452, 1178
BisI	GCNGC	9 cut(s)	87, 723, 2709, 2712, 2760, 3084, 3129, 3132, 3135
BlnI	CCTAGG	1 cut(s)	560
BlsI	GCNGC	9 cut(s)	88, 724, 2710, 2713, 2761, 3085, 3130, 3133, 3136
Bme1390I	CCNGG	4 cut(s)	150, 1463, 1842, 2258
Bme18I	GGWCC	4 cut(s)	241, 1157, 1264, 2824
BmeRI	GACNNNNNGTC	1 cut(s)	515
BmgT120I	GGNCC	8 cut(s)	241, 565, 1157, 1264, 1361, 2076, 2824, 2963
BmiI	GGNNCC	3 cut(s)	235, 566, 2826
BmrFI	CCNGG	4 cut(s)	150, 1463, 1842, 2258
BmrI	ACTGGG	2 cut(s)	1529, 3123
BmsI	GCATC	8 cut(s)	13, 190, 295, 1039, 1108, 1182, 2092, 3239
BmuI	ACTGGG	2 cut(s)	1529, 3123
BoxI	GACNNNNGTC	1 cut(s)	2477
BpiI	GAAGAC	2 cut(s)	630, 2681
BplI	GAGNNNNNCTC	6 cut(s)	329, 361, 1422, 1454, 3202, 3234
BpmI	CTGGAG	1 cut(s)	2253
Bpu14I	TTCGAA	1 cut(s)	1108
BpuEI	CTTGAG	4 cut(s)	1510, 2384, 3197, 3204
BpuMI	CCSGG	2 cut(s)	150, 1463
BsaAI	YACGTR	1 cut(s)	3140
BsaI	GGTCTC	1 cut(s)	1207
BsaJI	CCNNGG	6 cut(s)	237, 441, 560, 951, 1364, 2928
BsaWI	WCCGGW	1 cut(s)	1159
Bsc4I	CCNNNNNNNGG	9 cut(s)	725, 1022, 1631, 1736, 1841, 1876, 1946, 2189, 3165
Bse1I	ACTGG	7 cut(s)	536, 1027, 1535, 2059, 2517, 2836, 3118
Bse3DI	GCAATG	6 cut(s)	98, 738, 749, 1476, 2333, 2724
BseAI	TCCGGA	1 cut(s)	1159
BseBI	CCWGG	2 cut(s)	1842, 2258
BseDI	CCNNGG	6 cut(s)	237, 441, 560, 951, 1364, 2928
BseGI	GGATG	5 cut(s)	205, 556, 1123, 2083, 3124
BseLI	CCNNNNNNNGG	9 cut(s)	725, 1022, 1631, 1736, 1841, 1876, 1946, 2189, 3165
BseMI	GCAATG	6 cut(s)	98, 738, 749, 1476, 2333, 2724
BseMII	CTCAG	6 cut(s)	285, 423, 614, 1218, 2198, 3199
BseNI	ACTGG	7 cut(s)	536, 1027, 1535, 2059, 2517, 2836, 3118
BseSI	GKGCMC	1 cut(s)	1373
BseXI	GCAGC	9 cut(s)	98, 709, 2698, 2720, 2746, 3070, 3121, 3140, 3143
BseYI	CCCAGC	2 cut(s)	940, 1034
BsgI	GTGCAG	1 cut(s)	3120
BshFI	GGCC	7 cut(s)	567, 1015, 1363, 1461, 2077, 2648, 2964
BsiHKAI	GWGCWC	2 cut(s)	1373, 3220
BsiSI	CCGG	4 cut(s)	149, 719, 1160, 1462
BslFI	GGGAC	4 cut(s)	789, 859, 1679, 2251
BslI	CCNNNNNNNGG	9 cut(s)	725, 1022, 1631, 1736, 1841, 1876, 1946, 2189, 3165
BsmAI	GTCTC	6 cut(s)	502, 1066, 1207, 1292, 2361, 3127
BsmFI	GGGAC	4 cut(s)	789, 859, 1679, 2251
BsnI	GGCC	7 cut(s)	567, 1015, 1363, 1461, 2077, 2648, 2964
Bso31I	GGTCTC	1 cut(s)	1207
Bsp119I	TTCGAA	1 cut(s)	1108
Bsp1286I	GDGCHC	4 cut(s)	1373, 1592, 1601, 3220
Bsp13I	TCCGGA	1 cut(s)	1159
Bsp1407I	TGTACA	1 cut(s)	2115
BspACI	CCGC	1 cut(s)	980
BspANI	GGCC	7 cut(s)	567, 1015, 1363, 1461, 2077, 2648, 2964
BspCNI	CTCAG	6 cut(s)	286, 424, 615, 1217, 2197, 3198
BspEI	TCCGGA	1 cut(s)	1159
BspHI	TCATGA	2 cut(s)	2692, 2839
BspLI	GGNNCC	3 cut(s)	235, 566, 2826
BspMAI	CTGCAG	2 cut(s)	853, 3130
BspMI	ACCTGC	1 cut(s)	252
BspT104I	TTCGAA	1 cut(s)	1108
BspTNI	GGTCTC	1 cut(s)	1207
BsrDI	GCAATG	6 cut(s)	98, 738, 749, 1476, 2333, 2724
BsrGI	TGTACA	1 cut(s)	2115
BsrI	ACTGG	7 cut(s)	536, 1027, 1535, 2059, 2517, 2836, 3118
BssECI	CCNNGG	6 cut(s)	237, 441, 560, 951, 1364, 2928
BssT1I	CCWWGG	4 cut(s)	237, 441, 560, 951
Bst2UI	CCWGG	2 cut(s)	1842, 2258
BstAPI	GCANNNNNTGC	2 cut(s)	908, 3134
BstAUI	TGTACA	1 cut(s)	2115
BstBAI	YACGTR	1 cut(s)	3140
BstBI	TTCGAA	1 cut(s)	1108
BstC8I	GCNNGC	4 cut(s)	802, 909, 2706, 3156
BstDEI	CTNAG	7 cut(s)	294, 432, 623, 1204, 2184, 2543, 3185
BstDSI	CCRYGG	1 cut(s)	2928
BstENI	CCTNNNNNAGG	1 cut(s)	2187
BstF5I	GGATG	5 cut(s)	205, 556, 1123, 2083, 3124
BstHHI	GCGC	1 cut(s)	3050
BstMAI	GTCTC	6 cut(s)	502, 1066, 1207, 1292, 2361, 3127
BstMWI	GCNNNNNNNGC	7 cut(s)	86, 728, 908, 1596, 3134, 3140, 3236
BstNI	CCWGG	2 cut(s)	1842, 2258
BstNSI	RCATGY	2 cut(s)	788, 2308
BstPAI	GACNNNNGTC	1 cut(s)	2477
BstSCI	CCNGG	4 cut(s)	148, 1461, 1840, 2256
BstSFI	CTRYAG	5 cut(s)	849, 1152, 1182, 2715, 3126
BstSLI	GKGCMC	1 cut(s)	1373
BstV1I	GCAGC	9 cut(s)	98, 709, 2698, 2720, 2746, 3070, 3121, 3140, 3143
BstV2I	GAAGAC	2 cut(s)	630, 2681
BstX2I	RGATCY	7 cut(s)	452, 1100, 1178, 1753, 1858, 1963, 2986
BstXI	CCANNNNNNTGG	1 cut(s)	3259
BstYI	RGATCY	7 cut(s)	452, 1100, 1178, 1753, 1858, 1963, 2986
BsuI	GTATCC	2 cut(s)	1528, 2254
BsuRI	GGCC	7 cut(s)	567, 1015, 1363, 1461, 2077, 2648, 2964
BtgI	CCRYGG	1 cut(s)	2928
BtsCI	GGATG	5 cut(s)	205, 556, 1123, 2083, 3124
BtsI	GCAGTG	1 cut(s)	858
BtsIMutI	CAGTG	7 cut(s)	529, 858, 903, 1440, 1519, 2052, 2455
BveI	ACCTGC	1 cut(s)	252
Cac8I	GCNNGC	4 cut(s)	802, 909, 2706, 3156
CaiI	CAGNNNCTG	1 cut(s)	3134
CciI	TCATGA	2 cut(s)	2692, 2839
CfoI	GCGC	1 cut(s)	3050
Cfr13I	GGNCC	8 cut(s)	241, 565, 1157, 1264, 1361, 2076, 2824, 2963
Csp6I	GTAC	4 cut(s)	2116, 2213, 2612, 3060
CviQI	GTAC	4 cut(s)	2116, 2213, 2612, 3060
DdeI	CTNAG	7 cut(s)	294, 432, 623, 1204, 2184, 2543, 3185
DraI	TTTAAA	2 cut(s)	1233, 1959
DraIII	CACNNNGTG	1 cut(s)	1315
DriI	GACNNNNNGTC	1 cut(s)	515
EaeI	YGGCCR	1 cut(s)	1459
Eam1105I	GACNNNNNGTC	1 cut(s)	515
Ecl136II	GAGCTC	1 cut(s)	3218
Eco130I	CCWWGG	4 cut(s)	237, 441, 560, 951
Eco24I	GRGCYC	3 cut(s)	1592, 1601, 3220
Eco31I	GGTCTC	1 cut(s)	1207
Eco32I	GATATC	1 cut(s)	1091
Eco47I	GGWCC	4 cut(s)	241, 1157, 1264, 2824
Eco53kI	GAGCTC	1 cut(s)	3218
Eco57I	CTGAAG	5 cut(s)	48, 102, 624, 624, 2647
Eco72I	CACGTG	1 cut(s)	3140
EcoICRI	GAGCTC	1 cut(s)	3218
EcoNI	CCTNNNNNAGG	1 cut(s)	2187
EcoO109I	RGGNCCY	1 cut(s)	241
EcoRI	GAATTC	2 cut(s)	1612, 1814
EcoRII	CCWGG	2 cut(s)	1840, 2256
EcoRV	GATATC	1 cut(s)	1091
EcoT14I	CCWWGG	4 cut(s)	237, 441, 560, 951
EcoT22I	ATGCAT	2 cut(s)	665, 2085
EcoT38I	GRGCYC	3 cut(s)	1592, 1601, 3220
ErhI	CCWWGG	4 cut(s)	237, 441, 560, 951
FaqI	GGGAC	4 cut(s)	789, 859, 1679, 2251
FauNDI	CATATG	2 cut(s)	172, 3284
FbaI	TGATCA	2 cut(s)	2064, 2559
FblI	GTMKAC	2 cut(s)	437, 675
Fnu4HI	GCNGC	9 cut(s)	87, 723, 2709, 2712, 2760, 3084, 3129, 3132, 3135
FokI	GGATG	5 cut(s)	212, 543, 1130, 2070, 3131
FriOI	GRGCYC	3 cut(s)	1592, 1601, 3220
Fsp4HI	GCNGC	9 cut(s)	87, 723, 2709, 2712, 2760, 3084, 3129, 3132, 3135
FspBI	CTAG	6 cut(s)	141, 485, 561, 2802, 2942, 3054
GlaI	GCGC	1 cut(s)	3049
GluI	GCNGC	9 cut(s)	87, 723, 2709, 2712, 2760, 3084, 3129, 3132, 3135
GsaI	CCCAGC	2 cut(s)	944, 1038
GsuI	CTGGAG	1 cut(s)	2253
HaeIII	GGCC	7 cut(s)	567, 1015, 1363, 1461, 2077, 2648, 2964
HapII	CCGG	4 cut(s)	149, 719, 1160, 1462
HhaI	GCGC	1 cut(s)	3050
Hin6I	GCGC	1 cut(s)	3048
HinP1I	GCGC	1 cut(s)	3048
HincII	GTYRAC	2 cut(s)	967, 2254
HindII	GTYRAC	2 cut(s)	967, 2254
HindIII	AAGCTT	1 cut(s)	905
HpaII	CCGG	4 cut(s)	149, 719, 1160, 1462
HphI	GGTGA	9 cut(s)	25, 413, 755, 1259, 2144, 2311, 2381, 2404, 2527
Hpy166II	GTNNAC	6 cut(s)	438, 676, 967, 1371, 2254, 2302
Hpy8I	GTNNAC	6 cut(s)	438, 676, 967, 1371, 2254, 2302
HpyAV	CCTTC	9 cut(s)	247, 275, 991, 1324, 2383, 2689, 2905, 2907, 3038
HpyCH4IV	ACGT	3 cut(s)	2211, 3139, 3163
HpyF10VI	GCNNNNNNNGC	7 cut(s)	86, 728, 908, 1596, 3134, 3140, 3236
HpyF3I	CTNAG	7 cut(s)	294, 432, 623, 1204, 2184, 2543, 3185
HpySE526I	ACGT	3 cut(s)	2211, 3139, 3163
HspAI	GCGC	1 cut(s)	3048
Kpn2I	TCCGGA	1 cut(s)	1159
Ksp22I	TGATCA	2 cut(s)	2064, 2559
LmnI	GCTCC	2 cut(s)	1430, 3215
Lsp1109I	GCAGC	9 cut(s)	98, 709, 2698, 2720, 2746, 3070, 3121, 3140, 3143
LweI	GCATC	8 cut(s)	13, 190, 295, 1039, 1108, 1182, 2092, 3239
MaeI	CTAG	6 cut(s)	141, 485, 561, 2802, 2942, 3054
MaeII	ACGT	3 cut(s)	2211, 3139, 3163
MaeIII	GTNAC	5 cut(s)	743, 1315, 1930, 2324, 2369
MflI	RGATCY	7 cut(s)	452, 1100, 1178, 1753, 1858, 1963, 2986
MhlI	GDGCHC	4 cut(s)	1373, 1592, 1601, 3220
MlyI	GAGTC	8 cut(s)	443, 504, 1431, 1697, 1907, 2222, 2487, 2684
MmeI	TCCRAC	4 cut(s)	103, 1154, 1545, 2396
Mph1103I	ATGCAT	2 cut(s)	665, 2085
MroI	TCCGGA	1 cut(s)	1159
MroXI	GAANNNNTTC	2 cut(s)	609, 1059
MslI	CAYNNNNRTG	4 cut(s)	789, 1376, 2619, 2906
MspA1I	CMGCKG	5 cut(s)	89, 1376, 2711, 3083, 3134
MspI	CCGG	4 cut(s)	149, 719, 1160, 1462
MspR9I	CCNGG	4 cut(s)	150, 1463, 1842, 2258
MvaI	CCWGG	2 cut(s)	1842, 2258
MwoI	GCNNNNNNNGC	7 cut(s)	86, 728, 908, 1596, 3134, 3140, 3236
NciI	CCSGG	2 cut(s)	150, 1463
NdeI	CATATG	2 cut(s)	172, 3284
NlaIV	GGNNCC	3 cut(s)	235, 566, 2826
NmuCI	GTSAC	5 cut(s)	743, 1315, 1930, 2324, 2369
NsiI	ATGCAT	2 cut(s)	665, 2085
NspI	RCATGY	2 cut(s)	788, 2308
NspV	TTCGAA	1 cut(s)	1108
OliI	CACNNNNGTG	2 cut(s)	1376, 2906
PagI	TCATGA	2 cut(s)	2692, 2839
PciI	ACATGT	1 cut(s)	2304
PdmI	GAANNNNTTC	2 cut(s)	609, 1059
PflMI	CCANNNNNTGG	1 cut(s)	1876
PfoI	TCCNGGA	1 cut(s)	148
PkrI	GCNGC	9 cut(s)	88, 724, 2710, 2713, 2761, 3085, 3130, 3133, 3136
PleI	GAGTC	8 cut(s)	442, 504, 1431, 1697, 1907, 2222, 2486, 2683
PmaCI	CACGTG	1 cut(s)	3140
PmlI	CACGTG	1 cut(s)	3140
PpsI	GAGTC	8 cut(s)	442, 504, 1431, 1697, 1907, 2222, 2486, 2683
Ppu21I	YACGTR	1 cut(s)	3140
PpuMI	RGGWCCY	1 cut(s)	241
PscI	ACATGT	1 cut(s)	2304
PshAI	GACNNNNGTC	1 cut(s)	2477
PshBI	ATTAAT	1 cut(s)	2531
Psp124BI	GAGCTC	1 cut(s)	3220
Psp5II	RGGWCCY	1 cut(s)	241
Psp6I	CCWGG	2 cut(s)	1840, 2256
PspCI	CACGTG	1 cut(s)	3140
PspFI	CCCAGC	2 cut(s)	940, 1034
PspGI	CCWGG	2 cut(s)	1840, 2256
PspN4I	GGNNCC	3 cut(s)	235, 566, 2826
PspPI	GGNCC	8 cut(s)	241, 565, 1157, 1264, 1361, 2076, 2824, 2963
PspPPI	RGGWCCY	1 cut(s)	241
PsrI	GAACNNNNNNTAC	2 cut(s)	283, 315
PstI	CTGCAG	2 cut(s)	853, 3130
PstNI	CAGNNNCTG	1 cut(s)	3134
PsuI	RGATCY	7 cut(s)	452, 1100, 1178, 1753, 1858, 1963, 2986
PvuII	CAGCTG	5 cut(s)	89, 1376, 2711, 3083, 3134
RsaI	GTAC	4 cut(s)	2117, 2214, 2613, 3061
RsaNI	GTAC	4 cut(s)	2116, 2213, 2612, 3060
RseI	CAYNNNNRTG	4 cut(s)	789, 1376, 2619, 2906
SacI	GAGCTC	1 cut(s)	3220
SatI	GCNGC	9 cut(s)	87, 723, 2709, 2712, 2760, 3084, 3129, 3132, 3135
Sau96I	GGNCC	8 cut(s)	241, 565, 1157, 1264, 1361, 2076, 2824, 2963
SchI	GAGTC	8 cut(s)	443, 504, 1431, 1697, 1907, 2222, 2487, 2684
ScrFI	CCNGG	4 cut(s)	150, 1463, 1842, 2258
SduI	GDGCHC	4 cut(s)	1373, 1592, 1601, 3220
SfaNI	GCATC	8 cut(s)	13, 190, 295, 1039, 1108, 1182, 2092, 3239
SfcI	CTRYAG	5 cut(s)	849, 1152, 1182, 2715, 3126
SfuI	TTCGAA	1 cut(s)	1108
SinI	GGWCC	4 cut(s)	241, 1157, 1264, 2824
SmiMI	CAYNNNNRTG	4 cut(s)	789, 1376, 2619, 2906
SmlI	CTYRAG	4 cut(s)	1525, 2363, 3176, 3219
SmoI	CTYRAG	4 cut(s)	1525, 2363, 3176, 3219
SpeI	ACTAGT	2 cut(s)	2801, 3053
SsiI	CCGC	1 cut(s)	980
SspMI	CTAG	6 cut(s)	141, 485, 561, 2802, 2942, 3054
SstI	GAGCTC	1 cut(s)	3220
StyD4I	CCNGG	4 cut(s)	148, 1461, 1840, 2256
StyI	CCWWGG	4 cut(s)	237, 441, 560, 951
TaiI	ACGT	3 cut(s)	2214, 3142, 3166
TaqI	TCGA	8 cut(s)	34, 214, 1068, 1108, 1616, 2111, 2153, 3209
TatI	WGTACW	1 cut(s)	2115
TscAI	CASTG	7 cut(s)	536, 858, 903, 1447, 1519, 2059, 2455
TseFI	GTSAC	5 cut(s)	743, 1315, 1930, 2324, 2369
TseI	GCWGC	9 cut(s)	86, 722, 2708, 2711, 2759, 3083, 3128, 3131, 3134
Tsp45I	GTSAC	5 cut(s)	743, 1315, 1930, 2324, 2369
TspDTI	ATGAA	9 cut(s)	64, 684, 1052, 1652, 1999, 2337, 2681, 2856, 3018
TspGWI	ACGGA	2 cut(s)	1256, 2825
TspRI	CASTG	7 cut(s)	536, 858, 903, 1447, 1519, 2059, 2455
Van91I	CCANNNNNTGG	1 cut(s)	1876
VneI	GTGCAC	1 cut(s)	1369
VpaK11BI	GGWCC	4 cut(s)	241, 1157, 1264, 2824
VspI	ATTAAT	1 cut(s)	2531
XagI	CCTNNNNNAGG	1 cut(s)	2187
XapI	RAATTY	7 cut(s)	1057, 1214, 1423, 1612, 1760, 1814, 2857
XceI	RCATGY	2 cut(s)	788, 2308
XmaJI	CCTAGG	1 cut(s)	560
XmiI	GTMKAC	2 cut(s)	437, 675
XmnI	GAANNNNTTC	2 cut(s)	609, 1059
XspI	CTAG	6 cut(s)	141, 485, 561, 2802, 2942, 3054
Zsp2I	ATGCAT	2 cut(s)	665, 2085

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.