Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0002511

Physical Location & Seq

Genomic Coordinates Reverse (-)

30013058 .. 30015056

Gene Structure 1999 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1223200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 177 bp

ATGAAAGATTGGCCATCGTTCAAAAGGTCTTTTCCAAATCTTGAAGAAGTGGGAGAATTTTCATTAATGTCAGTTCTGAGATGGAGCTTCAAGATCAAGGTGGACAAGACAATCTGCTCCTCTGATCATGGACAAATGATTCTGGATTCCGGAGACCTTGCCTTGTCTTCACGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0002791 GO:0002792 GO:0002793 GO:0003674 GO:0005096 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0008047 GO:0008150 GO:0010646 GO:0010648 GO:0010817 GO:0016020 GO:0017016 GO:0017137 GO:0017157 GO:0019899 GO:0019905 GO:0023051 GO:0023057 GO:0030234 GO:0030695 GO:0031267 GO:0032879 GO:0032880 GO:0033500 GO:0042592 GO:0042593 GO:0043085 GO:0043087 GO:0043547 GO:0044093 GO:0044424 GO:0044464 GO:0046676 GO:0046883 GO:0046888 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048878 GO:0050708 GO:0050709 GO:0050714 GO:0050789 GO:0050790 GO:0050794 GO:0050796 GO:0051020 GO:0051046 GO:0051047 GO:0051048 GO:0051049 GO:0051050 GO:0051051 GO:0051222 GO:0051223 GO:0051224 GO:0051336 GO:0051345 GO:0060589 GO:0060627 GO:0065007 GO:0065008 GO:0065009 GO:0070201 GO:0071944 GO:0090087 GO:0090276 GO:0090278 GO:0098772 GO:1903530 GO:1903531 GO:1903532 GO:1904950 GO:1904951

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANAPC4_WD40 Synaptobrevin

Protein Analysis

59

Amino Acids

6.65

Weight (kDa)

6.53

Isoelectric Point (pI)

54.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002511)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05570 AT5G05570
fragaria_vesca	FvH4_6g11290 FvH4_6g11290 FvH4_6g11290 FvH4_7g24600 FvH4_7g24600
malus_domestica	MD01G1154200.v1.1 MD04G1155600.v1.1 MD07G1223200.v1.1 MD12G1168800.v1.1
prunus_persica	Prupe.2G251300_v2.0.a1 Prupe.6G279100_v2.0.a1 Prupe.6G279100_v2.0.a1
pyrus_communis	pycom01g17150 pycom04g14030 pycom12g16030
rosa_chinensis	RchiOBHm_Chr1g0370431 RchiOBHm_Chr3g0462831
rosa_laevigata	RLG00000024829 RLG00000027044
rosa_multiflora	Rmu_sc0000766.1_g000011 Rmu_sc0005656.1_g000008 Rmu_sc0035228.1_g000001
rosa_roxburghii	Rroxscaffold_4G00286580 Rroxscaffold_6G00417170
rosa_rugosa	Rorug01G0356400 Rorug01G0356500 Rorug01G0356600 Rorug03G0059500 Rorug03G0059500
rosa_samantha	Rh1AG364900 Rh1BG328100 Rh1CG341100 Rh1DG358400 Rh3AG117600 Rh3BG121400 Rh3CG124300 Rh3DG123000
rosa_wichuraiana	Rw1G032160 Rw3G009970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	149
AcoI	YGGCCR	1 cut(s)	11
AcsI	RAATTY	1 cut(s)	56
AgsI	TTSAA	3 cut(s)	22, 44, 91
AluBI	AGCT	1 cut(s)	87
AluI	AGCT	1 cut(s)	87
Alw26I	GTCTC	1 cut(s)	147
Aor13HI	TCCGGA	1 cut(s)	149
AoxI	GGCC	1 cut(s)	11
ApoI	RAATTY	1 cut(s)	56
AseI	ATTAAT	1 cut(s)	65
BalI	TGGCCA	1 cut(s)	13
BbsI	GAAGAC	1 cut(s)	159
BccI	CCATC	2 cut(s)	22, 75
BclI	TGATCA	1 cut(s)	124
BcoDI	GTCTC	1 cut(s)	147
BpiI	GAAGAC	1 cut(s)	159
BsaI	GGTCTC	1 cut(s)	147
BsaWI	WCCGGW	1 cut(s)	149
BseAI	TCCGGA	1 cut(s)	149
BseMII	CTCAG	1 cut(s)	68
BseRI	GAGGAG	1 cut(s)	109
BshFI	GGCC	1 cut(s)	13
BsiSI	CCGG	1 cut(s)	150
BsmAI	GTCTC	1 cut(s)	147
BsnI	GGCC	1 cut(s)	13
Bso31I	GGTCTC	1 cut(s)	147
Bsp13I	TCCGGA	1 cut(s)	149
Bsp143I	GATC	2 cut(s)	93, 124
BspANI	GGCC	1 cut(s)	13
BspCNI	CTCAG	1 cut(s)	69
BspEI	TCCGGA	1 cut(s)	149
BspTNI	GGTCTC	1 cut(s)	147
BssMI	GATC	2 cut(s)	93, 124
BstDEI	CTNAG	1 cut(s)	77
BstKTI	GATC	2 cut(s)	96, 127
BstMAI	GTCTC	1 cut(s)	147
BstMBI	GATC	2 cut(s)	93, 124
BstV2I	GAAGAC	1 cut(s)	159
BsuRI	GGCC	1 cut(s)	13
CviAII	CATG	1 cut(s)	128
CviJI	RGCY	2 cut(s)	13, 87
CviKI_1	RGCY	2 cut(s)	13, 87
DdeI	CTNAG	1 cut(s)	77
DpnI	GATC	2 cut(s)	95, 126
DpnII	GATC	2 cut(s)	93, 124
EaeI	YGGCCR	1 cut(s)	11
Eco31I	GGTCTC	1 cut(s)	147
FaeI	CATG	1 cut(s)	131
FaiI	YATR	1 cut(s)	129
FatI	CATG	1 cut(s)	127
FbaI	TGATCA	1 cut(s)	124
HaeIII	GGCC	1 cut(s)	13
HapII	CCGG	1 cut(s)	150
Hin1II	CATG	1 cut(s)	131
HinfI	GANTC	2 cut(s)	139, 146
HpaII	CCGG	1 cut(s)	150
Hpy166II	GTNNAC	1 cut(s)	103
Hpy188I	TCNGA	2 cut(s)	78, 124
Hpy188III	TCNNGA	5 cut(s)	41, 91, 143, 150, 171
Hpy8I	GTNNAC	1 cut(s)	103
HpyF3I	CTNAG	1 cut(s)	77
Hsp92II	CATG	1 cut(s)	131
Kpn2I	TCCGGA	1 cut(s)	149
Ksp22I	TGATCA	1 cut(s)	124
Kzo9I	GATC	2 cut(s)	93, 124
LmnI	GCTCC	2 cut(s)	84, 122
LpnPI	CCDG	2 cut(s)	128, 163
MalI	GATC	2 cut(s)	95, 126
MboI	GATC	2 cut(s)	93, 124
MboII	GAAGA	2 cut(s)	56, 159
MlsI	TGGCCA	1 cut(s)	13
MluCI	AATT	1 cut(s)	56
MluNI	TGGCCA	1 cut(s)	13
MnlI	CCTC	1 cut(s)	130
Mox20I	TGGCCA	1 cut(s)	13
MroI	TCCGGA	1 cut(s)	149
MscI	TGGCCA	1 cut(s)	13
MseI	TTAA	1 cut(s)	65
Msp20I	TGGCCA	1 cut(s)	13
MspI	CCGG	1 cut(s)	150
NdeII	GATC	2 cut(s)	93, 124
NlaIII	CATG	1 cut(s)	131
PfeI	GAWTC	2 cut(s)	139, 146
PshBI	ATTAAT	1 cut(s)	65
SaqAI	TTAA	1 cut(s)	65
Sau3AI	GATC	2 cut(s)	93, 124
SetI	ASST	4 cut(s)	29, 89, 102, 159
SgeI	CNNG	8 cut(s)	53, 103, 109, 118, 140, 155, 162, 170
Sse9I	AATT	1 cut(s)	56
TasI	AATT	1 cut(s)	56
TfiI	GAWTC	2 cut(s)	139, 146
Tru1I	TTAA	1 cut(s)	65
Tru9I	TTAA	1 cut(s)	65
TspDTI	ATGAA	2 cut(s)	17, 51
VspI	ATTAAT	1 cut(s)	65
XapI	RAATTY	1 cut(s)	56

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.