Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0002511

Physical Location & Seq

Genomic Coordinates Reverse (-)

61559196 .. 61568507

Gene Structure 9312 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG341100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3870 bp

ATGAATCGTACGGTCGGTGAGTCCTCCTCCGCCCTCGCATCACCGTCCACCTCACACTCAATTCGCGCCTCACCATCGTCGTCGTCCGAAACGTTTCAGAAACCGAAACCAAAACGCCATTCTTGTTTTTCCTTCCCTCCTTTCAAATCAGACCAAGAAACAAGAAACAGTAGCTGCATCATCATCACTATGTTGGCTAAACTATTCAAAAGACCCTCACAAAAACAACATCATCCTCAGGCAAGGGTGTCACAAGCTGATTTGGATCCAAGAATTGTTTTTCACTATGGGATTCCATCTACTGCATCGATTCTCGCACTTGATCGCACGCAGAGCTTGCTGGCAATTGGAACCCTGGATGGGAGGATAAAAGTGATCGGTGGCGATAATATTGAAGGGCTTCTGATATCTCCTGAGCCATTGGCCTTTAAATACTTGGAGTTCTTAGAAAATCAAGGTTTTTTAGCTAGTGTCTCAAGTGAAAATGAAATTCAGGTTTGGGATTTGGAACAGAAGCAAATAGCTGGTTCTTTACAGTGGGAATGCAATATAACTGCCTTCTCTGTTATTTATGGCACCAATTACATGTATATTGGAAGCGAATATGCAATGGTGTCTATGGTGAAGTATGATGCTGAAGATCGAAAAATCAATTTACTGCCATATTATATTACTGCAAACTTCATAGCTGAAGCAGCTGGAATGTCATTGCCTGATAATCTTTCTGTTGTTGGAGTTCTCCATCAACCTAGTTCTCAGGGAAACAGACTGCTGATTGCATATGAGAATGGTCTGATTGCTCTCTGGGATGCTTTAGAAGATCGAGTTGTGCTTGTAAGAGGTTCCAAGGACCTGCAAGTGAAGGAAGAAACAGTCCATAATTCTTTTGAAGGCACAAGAACTGAGCTGACTGATGCTACATCAGACAGCAAACAGGTGGAGAAAGAGATAAGCTCTCTTTGTTGGGTATGCGATAATGGGTCAAGTCTTGCTGTTGGCTATGTAGATGGTGATATAATGTTTTGGGATATATCAACTGCTGAGTCTACCGAGGATCATAGATCTAAAAAGTTAGCTAACAATGTTGCGAAGCTAGAGTTATCCTCAGATGACAAGAGACTCCCTGTCATAGTTTTACACTGGTCTGCAAATAGGTTAAGTCATCATCCTAGGGGCCAACTCTTTGTTTATGGAGGTGAAGGAATTGGGTCTGAAGAAGTTCTCACGGTTCTGAGCGTGGATTGGTCTTCAGGAATAGAAAGTCTGAAATGCATAGGTCGTGTGGACCTTACACTTGTTGGTTCATTTGCAGATATGGTTTTACTTCCAGCTGCTGGTGCAATGGAGAACTGTGACACATTGCTATTCACTTTGACAAATCAGGGACAACTGCATGTCTATGACAAGGCTTGCTGGTCTGCCTTAATGTCTCACCAAAAGAAAAGGACTGATGGGACTGCAGTGCAGTATCCTATGTTTATACCTACTACTGAACCGTGTATGACAGTGGCAAAGCTTGCTTTGGTGGATAGAGATGGGAAATACTCCTCAGCTTTGTCCAAGGAAGTTTCAGTTGACAAGTCTAATGCGAAACACACTTTGAAGAAGGGGGGTGCAAAGTGGCCTTTGACTGGTGGTGTTCCCAGCCAACTTTCTTGTGCTGAAAATTTTCATGTCGAGAGACTATATGTAGCAGGATATCAAGATGGATCTGTTCGAATATGGGATGCCACCTATCCAACTCTGTCGCTTATATATGCTATAGGTCCTGAGGTAAAAGGCATCAGATCTACAGGTGCAAATGGAACAGTCTCAGCATTGGAATTTTGTTCTCTTACTTTAAAATTAGCTATTGGTGATGTGTGTGGTCTGGTTCGTCTATATAAACTAATAGGGAGTTCAGACGAGACAGAATTGCACTTTGTGACAAAAACAGAGAAGGAAGTTTATACTTCACAACAAGGTAATGGGCCTCGGTGCACAGCTGTGTTTTCTATTCTTGATTCTCCTATATCCATACTACAATATGCAAATTTTGGAGCAAGACTGACTGTGGGATATGAATGTGGCCAGGTTGCAATGCTTGATATTAGTACATCGTCAGTTTTGTTTCTTACAGACAGTGTCTCCAACTCAAGTTCCCCAGTCATCTGTCTGTCTGTGAAATCATTATCAGATACTAATAGCTTATCACCGAGCTCAAAGGGCTCTGAATCCAAGAATTCGACTGATCCTCAAAATGAAATGAATCCAAAGGATTTTGAATCCAAAACTTTAAGTGATTCTGGAAATGGGTTGGCAGTCCCAAAGGACTCTGAATCCAAGAATGTGGCTGACCCTGAACATGGAATGAGTGTAAAAGATCCTGAATCCAAGACTTTGAGTGATTCTGGAAATGGGTTGGCAATCCCAGAGAACTCTGAATCCAAGAATGTGGCTGATCCTGAACCTGGAATGAGTGTAAAAGATCCTGAATCCCAGACTTTGAGTGATTCTGGAAATGAGTTGGCAATCCCAAAAGACTCTGAATCCAAGAATGTGACTGATCCTGAACATGGAAAGAGTTTAAAAGATCCTGAATCCAAGACTTTGAGTGATTCTGAAAATGGGTTGGCGTTCATTATGACCAGAAATGCACATTTTGTTATTTTAGATAGTGCCACTGGCAATATGATCAGGTCTTGGCCCATGCATCCAAAAATGGATTCTACTGCGATTTCTATGTACATTATAGAGGATGGTGATGTTTTATTTGATTTGTCAAGTGCAAAAAAGGTTTCTTTAGACTTACCTCAGAAAGGCGTAGCTAAACTTGATGACGTACCACCTAATGCTGACTCTGGAGGGACACAGCTTGTGGTTGACCAGGATACCTCCACCAAAACTGCATATTTTTTGCAGAGATCGGTGAACATGTGTGTTTTACTTTGTTGTGACTACACCTTGCACTTATGTTCATTGAAGTCTCTGCTTGAGGGTGACAGTAACTGCATTCTGAAGGTGAATCTTGTAAAACCGTGTTGTTGGACTACAATCTTCAAAAAAGATGGAAAAGACAGTGGATTGGTTATACTAAATCAGACAGGAGTCTTTGAGATCAGGTCTTTTCCAAATCTTGAAGTGGTGAGAGATATATCATTAATGACGATTCTAAGATGGAACTTCGTGATCAACATGGATAAGACATTCTGTTCCTCTGATCGTGGGCAAATGATTCTGGTACATGGGTGTGAATTAGCTTTTGTATCTCTTTTGGCCTACGAAGATGACTTCAGGATTTCGGAGTCCTTCCCTTGTCTTCATGATAAAGTGCTTGCAGCTTCTACAGATGTCATTGCCGATTTATCTCAAAGACAGAAACAGAGTGCTGCCCATAGGATTTTAGGAGGTATCATTAAGGGCTTAAAAACTAGTAAGGATCAAAACATGGACCCGACTGGAAATCATGAAAAATATTGTGCGAATTTGGAGAGCTTATTTTCAAATCCCCCATTCTTAAAACCTTCCACAGATGTGAAGGATGACCAAGAACCCGTGGTGCTTAACCTAGATGATATTGTAATTGATGGCCCTATTACTGTCTTGCCTAAAGATCCAAACAAGAAGAATGTAAAGAAAGACAAGGGATCAGAGAAGAAAAAGTTATTTGAAGGCGCAACTAGTGGTACAAAGCCAAAAATGAGGACAGCTGCCGAAATCAAGGCTAAATATAGAGAAACTGGGGATGTCTCTGCAGCAGCTGCACGTGCAAGAGATATGCTTGCCGAACGTGGGGAAAAACTTGAGGTATGGTTTTCCACTAATGAATGCCTCAGCTCCCAATTGACAAATCTGGTTTTTCTTTTTATGTGGTTTTATTCAGTTGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0002791 GO:0002792 GO:0002793 GO:0003674 GO:0005096 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0008047 GO:0008150 GO:0010646 GO:0010648 GO:0010817 GO:0016020 GO:0017016 GO:0017137 GO:0017157 GO:0019899 GO:0019905 GO:0023051 GO:0023057 GO:0030234 GO:0030695 GO:0031267 GO:0032879 GO:0032880 GO:0033500 GO:0042592 GO:0042593 GO:0043085 GO:0043087 GO:0043547 GO:0044093 GO:0044424 GO:0044464 GO:0046676 GO:0046883 GO:0046888 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048878 GO:0050708 GO:0050709 GO:0050714 GO:0050789 GO:0050790 GO:0050794 GO:0050796 GO:0051020 GO:0051046 GO:0051047 GO:0051048 GO:0051049 GO:0051050 GO:0051051 GO:0051222 GO:0051223 GO:0051224 GO:0051336 GO:0051345 GO:0060589 GO:0060627 GO:0065007 GO:0065008 GO:0065009 GO:0070201 GO:0071944 GO:0090087 GO:0090276 GO:0090278 GO:0098772 GO:1903530 GO:1903531 GO:1903532 GO:1904950 GO:1904951

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANAPC4_WD40 Synaptobrevin

Protein Analysis

1289

Amino Acids

140.96

Weight (kDa)

5.37

Isoelectric Point (pI)

38.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002511)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05570 AT5G05570
fragaria_vesca	FvH4_6g11290 FvH4_6g11290 FvH4_6g11290 FvH4_7g24600 FvH4_7g24600
malus_domestica	MD01G1154200.v1.1 MD04G1155600.v1.1 MD07G1223200.v1.1 MD12G1168800.v1.1
prunus_persica	Prupe.2G251300_v2.0.a1 Prupe.6G279100_v2.0.a1 Prupe.6G279100_v2.0.a1
pyrus_communis	pycom01g17150 pycom04g14030 pycom12g16030
rosa_chinensis	RchiOBHm_Chr1g0370431 RchiOBHm_Chr3g0462831
rosa_laevigata	RLG00000024829 RLG00000027044
rosa_multiflora	Rmu_sc0000766.1_g000011 Rmu_sc0005656.1_g000008 Rmu_sc0035228.1_g000001
rosa_roxburghii	Rroxscaffold_4G00286580 Rroxscaffold_6G00417170
rosa_rugosa	Rorug01G0356400 Rorug01G0356500 Rorug01G0356600 Rorug03G0059500 Rorug03G0059500
rosa_samantha	Rh1AG364900 Rh1BG328100 Rh1CG341100 Rh1DG358400 Rh3AG117600 Rh3BG121400 Rh3CG124300 Rh3DG123000
rosa_wichuraiana	Rw1G032160 Rw3G009970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	861
AccB1I	GGYRCC	1 cut(s)	575
AccB7I	CCANNNNNTGG	1 cut(s)	1334
AccI	GTMKAC	1 cut(s)	1046
AccII	CGCG	1 cut(s)	66
AciI	CCGC	1 cut(s)	30
AclI	AACGTT	1 cut(s)	92
AcoI	YGGCCR	1 cut(s)	2068
AcsI	RAATTY	6 cut(s)	489, 1666, 1823, 2032, 2221, 3463
AcuI	CTGAAG	6 cut(s)	657, 711, 1233, 1233, 3017, 3256
AcvI	CACGTG	1 cut(s)	3746
AdeI	CACNNNGTG	1 cut(s)	1924
AfaI	GTAC	6 cut(s)	10, 2095, 2726, 2823, 3222, 3667
AfiI	CCNNNNNNNGG	8 cut(s)	360, 1334, 1631, 2345, 2450, 2555, 2798, 3771
AflIII	ACRYGT	2 cut(s)	585, 2913
AhdI	GACNNNNNGTC	1 cut(s)	1124
AhlI	ACTAGT	2 cut(s)	3410, 3659
AjnI	CCWGG	4 cut(s)	354, 2070, 2449, 2865
AjuI	GAANNNNNNNTTGG	4 cut(s)	103, 135, 2689, 2721
AleI	CACNNNNGTG	2 cut(s)	1985, 3512
AloI	GAACNNNNNNTCC	2 cut(s)	2408, 2440
Alw21I	GWGCWC	2 cut(s)	1982, 2201
Alw26I	GTCTC	9 cut(s)	478, 1111, 1434, 1675, 1816, 1901, 2131, 2970, 3733
Alw44I	GTGCAC	1 cut(s)	1978
AlwNI	CAGNNNCTG	4 cut(s)	174, 1334, 2988, 3740
AoxI	GGCC	8 cut(s)	423, 1174, 1622, 1970, 2068, 2684, 3255, 3568
ApaLI	GTGCAC	1 cut(s)	1978
ApeKI	GCWGC	9 cut(s)	174, 695, 1331, 3317, 3368, 3689, 3734, 3737, 3740
ApoI	RAATTY	6 cut(s)	489, 1666, 1823, 2032, 2221, 3463
AseI	ATTAAT	1 cut(s)	3140
Asp700I	GAANNNNTTC	4 cut(s)	93, 399, 1218, 1668
AspA2I	CCTAGG	1 cut(s)	1169
AspLEI	GCGC	2 cut(s)	68, 3656
AspS9I	GGNCC	8 cut(s)	850, 1174, 1285, 1766, 1970, 2685, 3430, 3569
AsuII	TTCGAA	1 cut(s)	1717
AvaII	GGWCC	4 cut(s)	850, 1285, 1766, 3430
AvrII	CCTAGG	1 cut(s)	1169
AxyI	CCTNAGG	2 cut(s)	237, 1770
BaeGI	GKGCMC	1 cut(s)	1982
BaeI	ACNNNNGTAYC	2 cut(s)	3212, 3245
BalI	TGGCCA	1 cut(s)	2070
BamHI	GGATCC	1 cut(s)	265
BanI	GGYRCC	1 cut(s)	575
BanII	GRGCYC	2 cut(s)	2201, 2210
BbrPI	CACGTG	1 cut(s)	3746
BbsI	GAAGAC	2 cut(s)	1239, 3290
Bbv12I	GWGCWC	2 cut(s)	1982, 2201
BbvCI	CCTCAGC	2 cut(s)	1549, 3812
BbvI	GCAGC	9 cut(s)	161, 707, 1318, 3329, 3355, 3676, 3727, 3746, 3749
BciT130I	CCWGG	4 cut(s)	356, 2072, 2451, 2867
BciVI	GTATCC	2 cut(s)	1479, 2863
BclI	TGATCA	2 cut(s)	2673, 3168
BcoDI	GTCTC	9 cut(s)	478, 1111, 1434, 1675, 1816, 1901, 2131, 2970, 3733
BcuI	ACTAGT	2 cut(s)	3410, 3659
BfaI	CTAG	7 cut(s)	468, 750, 1094, 1170, 3411, 3548, 3660
BfmI	CTRYAG	5 cut(s)	1458, 1761, 1791, 3324, 3732
BfuAI	ACCTGC	1 cut(s)	861
BfuI	GTATCC	2 cut(s)	1479, 2863
BglII	AGATCT	2 cut(s)	1061, 1787
BisI	GCNGC	9 cut(s)	175, 696, 1332, 3318, 3369, 3690, 3735, 3738, 3741
BlnI	CCTAGG	1 cut(s)	1169
BlsI	GCNGC	9 cut(s)	176, 697, 1333, 3319, 3370, 3691, 3736, 3739, 3742
Bme1390I	CCNGG	4 cut(s)	356, 2072, 2451, 2867
Bme18I	GGWCC	4 cut(s)	850, 1285, 1766, 3430
BmeRI	GACNNNNNGTC	1 cut(s)	1124
BmgT120I	GGNCC	8 cut(s)	850, 1174, 1285, 1766, 1970, 2685, 3430, 3569
BmiI	GGNNCC	6 cut(s)	267, 352, 577, 844, 1175, 3432
BmrFI	CCNGG	4 cut(s)	356, 2072, 2451, 2867
BmrI	ACTGGG	2 cut(s)	2138, 3729
BmsI	GCATC	9 cut(s)	47, 186, 314, 622, 799, 904, 1717, 1791, 2701
BmuI	ACTGGG	2 cut(s)	2138, 3729
BoxI	GACNNNNGTC	1 cut(s)	3086
BpiI	GAAGAC	2 cut(s)	1239, 3290
BplI	GAGNNNNNCTC	6 cut(s)	11, 43, 938, 970, 1088, 1120
BpmI	CTGGAG	1 cut(s)	2862
Bpu10I	CCTNAGC	3 cut(s)	414, 1549, 3812
Bpu14I	TTCGAA	1 cut(s)	1717
BpuEI	CTTGAG	4 cut(s)	460, 2119, 2993, 3803
Bsa29I	ATCGAT	1 cut(s)	308
BsaAI	YACGTR	1 cut(s)	3746
BsaBI	GATNNNNATC	1 cut(s)	264
BsaJI	CCNNGG	7 cut(s)	354, 846, 1050, 1169, 1560, 1973, 3534
BsaXI	ACNNNNNCTCC	2 cut(s)	2111, 2141
Bsc4I	CCNNNNNNNGG	8 cut(s)	360, 1334, 1631, 2345, 2450, 2555, 2798, 3771
Bse1I	ACTGG	6 cut(s)	1145, 1636, 2144, 2668, 3442, 3724
Bse21I	CCTNAGG	2 cut(s)	237, 1770
Bse3DI	GCAATG	6 cut(s)	615, 707, 1347, 1358, 2085, 3333
Bse8I	GATNNNNATC	1 cut(s)	264
BseBI	CCWGG	4 cut(s)	356, 2072, 2451, 2867
BseCI	ATCGAT	1 cut(s)	308
BseDI	CCNNGG	7 cut(s)	354, 846, 1050, 1169, 1560, 1973, 3534
BseGI	GGATG	9 cut(s)	232, 364, 814, 1165, 1732, 2692, 2743, 3526, 3730
BseJI	GATNNNNATC	1 cut(s)	264
BseLI	CCNNNNNNNGG	8 cut(s)	360, 1334, 1631, 2345, 2450, 2555, 2798, 3771
BseMI	GCAATG	6 cut(s)	615, 707, 1347, 1358, 2085, 3333
BseNI	ACTGG	6 cut(s)	1145, 1636, 2144, 2668, 3442, 3724
BseRI	GAGGAG	2 cut(s)	16, 1537
BseSI	GKGCMC	1 cut(s)	1982
BseXI	GCAGC	9 cut(s)	161, 707, 1318, 3329, 3355, 3676, 3727, 3746, 3749
BseYI	CCCAGC	1 cut(s)	1643
BsgI	GTGCAG	2 cut(s)	1484, 3726
Bsh1236I	CGCG	1 cut(s)	66
Bsh1285I	CGRYCG	1 cut(s)	15
BshFI	GGCC	8 cut(s)	425, 1176, 1624, 1972, 2070, 2686, 3257, 3570
BshNI	GGYRCC	1 cut(s)	575
BshVI	ATCGAT	1 cut(s)	308
BsiEI	CGRYCG	1 cut(s)	15
BsiHKAI	GWGCWC	2 cut(s)	1982, 2201
BsiWI	CGTACG	1 cut(s)	8
BslFI	GGGAC	4 cut(s)	1398, 1468, 2288, 2860
BslI	CCNNNNNNNGG	8 cut(s)	360, 1334, 1631, 2345, 2450, 2555, 2798, 3771
BsmAI	GTCTC	9 cut(s)	478, 1111, 1434, 1675, 1816, 1901, 2131, 2970, 3733
BsmFI	GGGAC	4 cut(s)	1398, 1468, 2288, 2860
BsmI	GAATGC	3 cut(s)	548, 2991, 3812
BsnI	GGCC	8 cut(s)	425, 1176, 1624, 1972, 2070, 2686, 3257, 3570
Bsp119I	TTCGAA	1 cut(s)	1717
Bsp1286I	GDGCHC	3 cut(s)	1982, 2201, 2210
Bsp1407I	TGTACA	1 cut(s)	2724
BspACI	CCGC	1 cut(s)	30
BspANI	GGCC	8 cut(s)	425, 1176, 1624, 1972, 2070, 2686, 3257, 3570
BspDI	ATCGAT	1 cut(s)	308
BspFNI	CGCG	1 cut(s)	66
BspHI	TCATGA	2 cut(s)	3301, 3445
BspLI	GGNNCC	6 cut(s)	267, 352, 577, 844, 1175, 3432
BspMAI	CTGCAG	2 cut(s)	1462, 3736
BspMI	ACCTGC	1 cut(s)	861
BspT104I	TTCGAA	1 cut(s)	1717
BspT107I	GGYRCC	1 cut(s)	575
BsrDI	GCAATG	6 cut(s)	615, 707, 1347, 1358, 2085, 3333
BsrGI	TGTACA	1 cut(s)	2724
BsrI	ACTGG	6 cut(s)	1145, 1636, 2144, 2668, 3442, 3724
BssECI	CCNNGG	7 cut(s)	354, 846, 1050, 1169, 1560, 1973, 3534
BssT1I	CCWWGG	3 cut(s)	846, 1169, 1560
Bst2UI	CCWGG	4 cut(s)	356, 2072, 2451, 2867
BstAPI	GCANNNNNTGC	3 cut(s)	337, 1517, 3740
BstAUI	TGTACA	1 cut(s)	2724
BstBAI	YACGTR	1 cut(s)	3746
BstBI	TTCGAA	1 cut(s)	1717
BstC8I	GCNNGC	7 cut(s)	329, 338, 342, 1411, 1518, 3315, 3762
BstDSI	CCRYGG	1 cut(s)	3534
BstENI	CCTNNNNNAGG	1 cut(s)	2796
BstF5I	GGATG	9 cut(s)	232, 364, 814, 1165, 1732, 2692, 2743, 3526, 3730
BstFNI	CGCG	1 cut(s)	66
BstHHI	GCGC	2 cut(s)	68, 3656
BstMAI	GTCTC	9 cut(s)	478, 1111, 1434, 1675, 1816, 1901, 2131, 2970, 3733
BstMCI	CGRYCG	1 cut(s)	15
BstMWI	GCNNNNNNNGC	8 cut(s)	333, 337, 695, 1337, 1517, 2205, 3740, 3746
BstNI	CCWGG	4 cut(s)	356, 2072, 2451, 2867
BstNSI	RCATGY	3 cut(s)	589, 1397, 2917
BstPAI	GACNNNNGTC	1 cut(s)	3086
BstSCI	CCNGG	4 cut(s)	354, 2070, 2449, 2865
BstSFI	CTRYAG	5 cut(s)	1458, 1761, 1791, 3324, 3732
BstSLI	GKGCMC	1 cut(s)	1982
BstUI	CGCG	1 cut(s)	66
BstV1I	GCAGC	9 cut(s)	161, 707, 1318, 3329, 3355, 3676, 3727, 3746, 3749
BstV2I	GAAGAC	2 cut(s)	1239, 3290
BstX2I	RGATCY	8 cut(s)	265, 1061, 1709, 1787, 2362, 2467, 2572, 3592
BstXI	CCANNNNNNTGG	2 cut(s)	2329, 2434
BstYI	RGATCY	8 cut(s)	265, 1061, 1709, 1787, 2362, 2467, 2572, 3592
Bsu15I	ATCGAT	1 cut(s)	308
Bsu36I	CCTNAGG	2 cut(s)	237, 1770
BsuI	GTATCC	2 cut(s)	1479, 2863
BsuRI	GGCC	8 cut(s)	425, 1176, 1624, 1972, 2070, 2686, 3257, 3570
BsuTUI	ATCGAT	1 cut(s)	308
BtgI	CCRYGG	1 cut(s)	3534
BtsCI	GGATG	9 cut(s)	232, 364, 814, 1165, 1732, 2692, 2743, 3526, 3730
BtsI	GCAGTG	1 cut(s)	1467
BtsIMutI	CAGTG	7 cut(s)	542, 1138, 1467, 1512, 2128, 2661, 3064
BveI	ACCTGC	1 cut(s)	861
Cac8I	GCNNGC	7 cut(s)	329, 338, 342, 1411, 1518, 3315, 3762
CaiI	CAGNNNCTG	4 cut(s)	174, 1334, 2988, 3740
CciI	TCATGA	2 cut(s)	3301, 3445
CfoI	GCGC	2 cut(s)	68, 3656
Cfr13I	GGNCC	8 cut(s)	850, 1174, 1285, 1766, 1970, 2685, 3430, 3569
ClaI	ATCGAT	1 cut(s)	308
Csp6I	GTAC	6 cut(s)	9, 2094, 2725, 2822, 3221, 3666
CviQI	GTAC	6 cut(s)	9, 2094, 2725, 2822, 3221, 3666
DraI	TTTAAA	3 cut(s)	430, 1842, 2568
DraIII	CACNNNGTG	1 cut(s)	1924
DriI	GACNNNNNGTC	1 cut(s)	1124
EaeI	YGGCCR	1 cut(s)	2068
Eam1105I	GACNNNNNGTC	1 cut(s)	1124
EciI	GGCGGA	1 cut(s)	19
Ecl136II	GAGCTC	1 cut(s)	2199
Eco130I	CCWWGG	3 cut(s)	846, 1169, 1560
Eco24I	GRGCYC	2 cut(s)	2201, 2210
Eco32I	GATATC	2 cut(s)	408, 1700
Eco47I	GGWCC	4 cut(s)	850, 1285, 1766, 3430
Eco53kI	GAGCTC	1 cut(s)	2199
Eco57I	CTGAAG	6 cut(s)	657, 711, 1233, 1233, 3017, 3256
Eco72I	CACGTG	1 cut(s)	3746
Eco81I	CCTNAGG	2 cut(s)	237, 1770
EcoICRI	GAGCTC	1 cut(s)	2199
EcoNI	CCTNNNNNAGG	1 cut(s)	2796
EcoO109I	RGGNCCY	2 cut(s)	850, 1766
EcoRI	GAATTC	1 cut(s)	2221
EcoRII	CCWGG	4 cut(s)	354, 2070, 2449, 2865
EcoRV	GATATC	2 cut(s)	408, 1700
EcoT14I	CCWWGG	3 cut(s)	846, 1169, 1560
EcoT22I	ATGCAT	2 cut(s)	1274, 2694
EcoT38I	GRGCYC	2 cut(s)	2201, 2210
ErhI	CCWWGG	3 cut(s)	846, 1169, 1560
FaqI	GGGAC	4 cut(s)	1398, 1468, 2288, 2860
FauNDI	CATATG	1 cut(s)	781
FbaI	TGATCA	2 cut(s)	2673, 3168
FblI	GTMKAC	1 cut(s)	1046
Fnu4HI	GCNGC	9 cut(s)	175, 696, 1332, 3318, 3369, 3690, 3735, 3738, 3741
FokI	GGATG	9 cut(s)	219, 371, 821, 1152, 1739, 2679, 2750, 3533, 3737
FriOI	GRGCYC	2 cut(s)	2201, 2210
Fsp4HI	GCNGC	9 cut(s)	175, 696, 1332, 3318, 3369, 3690, 3735, 3738, 3741
FspBI	CTAG	7 cut(s)	468, 750, 1094, 1170, 3411, 3548, 3660
GlaI	GCGC	2 cut(s)	67, 3655
GluI	GCNGC	9 cut(s)	175, 696, 1332, 3318, 3369, 3690, 3735, 3738, 3741
GsaI	CCCAGC	1 cut(s)	1647
GsuI	CTGGAG	1 cut(s)	2862
HaeIII	GGCC	8 cut(s)	425, 1176, 1624, 1972, 2070, 2686, 3257, 3570
HhaI	GCGC	2 cut(s)	68, 3656
Hin6I	GCGC	2 cut(s)	66, 3654
HinP1I	GCGC	2 cut(s)	66, 3654
HincII	GTYRAC	2 cut(s)	1576, 2863
HindII	GTYRAC	2 cut(s)	1576, 2863
HindIII	AAGCTT	1 cut(s)	1514
Hpy166II	GTNNAC	7 cut(s)	48, 1047, 1285, 1576, 1980, 2863, 2911
Hpy8I	GTNNAC	7 cut(s)	48, 1047, 1285, 1576, 1980, 2863, 2911
Hpy99I	CGWCG	2 cut(s)	82, 85
HpyCH4IV	ACGT	4 cut(s)	92, 2820, 3745, 3769
HpyF10VI	GCNNNNNNNGC	8 cut(s)	333, 337, 695, 1337, 1517, 2205, 3740, 3746
HpySE526I	ACGT	4 cut(s)	92, 2820, 3745, 3769
HspAI	GCGC	2 cut(s)	66, 3654
Ksp22I	TGATCA	2 cut(s)	2673, 3168
LmnI	GCTCC	2 cut(s)	2039, 3821
Lsp1109I	GCAGC	9 cut(s)	161, 707, 1318, 3329, 3355, 3676, 3727, 3746, 3749
LweI	GCATC	9 cut(s)	47, 186, 314, 622, 799, 904, 1717, 1791, 2701
MaeI	CTAG	7 cut(s)	468, 750, 1094, 1170, 3411, 3548, 3660
MaeII	ACGT	4 cut(s)	92, 2820, 3745, 3769
MaeIII	GTNAC	7 cut(s)	249, 1352, 1924, 2539, 2933, 2978, 2984
MfeI	CAATTG	2 cut(s)	345, 3821
MflI	RGATCY	8 cut(s)	265, 1061, 1709, 1787, 2362, 2467, 2572, 3592
MhlI	GDGCHC	3 cut(s)	1982, 2201, 2210
MlsI	TGGCCA	1 cut(s)	2070
MluNI	TGGCCA	1 cut(s)	2070
MlyI	GAGTC	8 cut(s)	29, 1052, 1113, 2306, 2516, 2831, 3096, 3293
MmeI	TCCRAC	4 cut(s)	712, 1763, 2154, 3005
Mox20I	TGGCCA	1 cut(s)	2070
Mph1103I	ATGCAT	2 cut(s)	1274, 2694
MroXI	GAANNNNTTC	4 cut(s)	93, 399, 1218, 1668
MscI	TGGCCA	1 cut(s)	2070
MslI	CAYNNNNRTG	5 cut(s)	188, 1398, 1985, 3228, 3512
Msp20I	TGGCCA	1 cut(s)	2070
MspA1I	CMGCKG	5 cut(s)	698, 1331, 1985, 3689, 3740
MspR9I	CCNGG	4 cut(s)	356, 2072, 2451, 2867
MunI	CAATTG	2 cut(s)	345, 3821
Mva1269I	GAATGC	3 cut(s)	548, 2991, 3812
MvaI	CCWGG	4 cut(s)	356, 2072, 2451, 2867
MvnI	CGCG	1 cut(s)	66
MwoI	GCNNNNNNNGC	8 cut(s)	333, 337, 695, 1337, 1517, 2205, 3740, 3746
NdeI	CATATG	1 cut(s)	781
NlaIV	GGNNCC	6 cut(s)	267, 352, 577, 844, 1175, 3432
NmuCI	GTSAC	6 cut(s)	249, 1352, 1924, 2539, 2933, 2978
NsiI	ATGCAT	2 cut(s)	1274, 2694
NspI	RCATGY	3 cut(s)	589, 1397, 2917
NspV	TTCGAA	1 cut(s)	1717
OliI	CACNNNNGTG	2 cut(s)	1985, 3512
PagI	TCATGA	2 cut(s)	3301, 3445
PciI	ACATGT	2 cut(s)	585, 2913
PcsI	WCGNNNNNNNCGW	1 cut(s)	89
PctI	GAATGC	3 cut(s)	548, 2991, 3812
PdmI	GAANNNNTTC	4 cut(s)	93, 399, 1218, 1668
Pfl23II	CGTACG	1 cut(s)	8
PflFI	GACNNNGTC	1 cut(s)	2123
PflMI	CCANNNNNTGG	1 cut(s)	1334
PkrI	GCNGC	9 cut(s)	176, 697, 1333, 3319, 3370, 3691, 3736, 3739, 3742
PleI	GAGTC	8 cut(s)	28, 1051, 1113, 2306, 2516, 2831, 3095, 3292
PmaCI	CACGTG	1 cut(s)	3746
PmlI	CACGTG	1 cut(s)	3746
PpsI	GAGTC	8 cut(s)	28, 1051, 1113, 2306, 2516, 2831, 3095, 3292
Ppu21I	YACGTR	1 cut(s)	3746
PpuMI	RGGWCCY	2 cut(s)	850, 1766
PscI	ACATGT	2 cut(s)	585, 2913
PshAI	GACNNNNGTC	1 cut(s)	3086
PshBI	ATTAAT	1 cut(s)	3140
Psp124BI	GAGCTC	1 cut(s)	2201
Psp1406I	AACGTT	1 cut(s)	92
Psp5II	RGGWCCY	2 cut(s)	850, 1766
Psp6I	CCWGG	4 cut(s)	354, 2070, 2449, 2865
PspCI	CACGTG	1 cut(s)	3746
PspFI	CCCAGC	1 cut(s)	1643
PspGI	CCWGG	4 cut(s)	354, 2070, 2449, 2865
PspLI	CGTACG	1 cut(s)	8
PspN4I	GGNNCC	6 cut(s)	267, 352, 577, 844, 1175, 3432
PspPI	GGNCC	8 cut(s)	850, 1174, 1285, 1766, 1970, 2685, 3430, 3569
PspPPI	RGGWCCY	2 cut(s)	850, 1766
PstI	CTGCAG	2 cut(s)	1462, 3736
PstNI	CAGNNNCTG	4 cut(s)	174, 1334, 2988, 3740
PsuI	RGATCY	8 cut(s)	265, 1061, 1709, 1787, 2362, 2467, 2572, 3592
PsyI	GACNNNGTC	1 cut(s)	2123
PvuII	CAGCTG	5 cut(s)	698, 1331, 1985, 3689, 3740
RsaI	GTAC	6 cut(s)	10, 2095, 2726, 2823, 3222, 3667
RsaNI	GTAC	6 cut(s)	9, 2094, 2725, 2822, 3221, 3666
RseI	CAYNNNNRTG	5 cut(s)	188, 1398, 1985, 3228, 3512
SacI	GAGCTC	1 cut(s)	2201
SatI	GCNGC	9 cut(s)	175, 696, 1332, 3318, 3369, 3690, 3735, 3738, 3741
Sau96I	GGNCC	8 cut(s)	850, 1174, 1285, 1766, 1970, 2685, 3430, 3569
SchI	GAGTC	8 cut(s)	29, 1052, 1113, 2306, 2516, 2831, 3096, 3293
ScrFI	CCNGG	4 cut(s)	356, 2072, 2451, 2867
SduI	GDGCHC	3 cut(s)	1982, 2201, 2210
SfaNI	GCATC	9 cut(s)	47, 186, 314, 622, 799, 904, 1717, 1791, 2701
SfcI	CTRYAG	5 cut(s)	1458, 1761, 1791, 3324, 3732
SfuI	TTCGAA	1 cut(s)	1717
SinI	GGWCC	4 cut(s)	850, 1285, 1766, 3430
SmiMI	CAYNNNNRTG	5 cut(s)	188, 1398, 1985, 3228, 3512
SmlI	CTYRAG	4 cut(s)	475, 2134, 2972, 3782
SmoI	CTYRAG	4 cut(s)	475, 2134, 2972, 3782
SpeI	ACTAGT	2 cut(s)	3410, 3659
SsiI	CCGC	1 cut(s)	30
SspI	AATATT	2 cut(s)	391, 3455
SspMI	CTAG	7 cut(s)	468, 750, 1094, 1170, 3411, 3548, 3660
SstI	GAGCTC	1 cut(s)	2201
StyD4I	CCNGG	4 cut(s)	354, 2070, 2449, 2865
StyI	CCWWGG	3 cut(s)	846, 1169, 1560
TaiI	ACGT	4 cut(s)	95, 2823, 3748, 3772
TaqI	TCGA	6 cut(s)	308, 643, 823, 1677, 1717, 2225
TatI	WGTACW	2 cut(s)	2093, 2724
TscAI	CASTG	7 cut(s)	542, 1145, 1467, 1512, 2128, 2668, 3064
TseFI	GTSAC	6 cut(s)	249, 1352, 1924, 2539, 2933, 2978
TseI	GCWGC	9 cut(s)	174, 695, 1331, 3317, 3368, 3689, 3734, 3737, 3740
Tsp45I	GTSAC	6 cut(s)	249, 1352, 1924, 2539, 2933, 2978
TspRI	CASTG	7 cut(s)	542, 1145, 1467, 1512, 2128, 2668, 3064
Tth111I	GACNNNGTC	1 cut(s)	2123
Van91I	CCANNNNNTGG	1 cut(s)	1334
VneI	GTGCAC	1 cut(s)	1978
VpaK11BI	GGWCC	4 cut(s)	850, 1285, 1766, 3430
VspI	ATTAAT	1 cut(s)	3140
XagI	CCTNNNNNAGG	1 cut(s)	2796
XapI	RAATTY	6 cut(s)	489, 1666, 1823, 2032, 2221, 3463
XceI	RCATGY	3 cut(s)	589, 1397, 2917
XmaJI	CCTAGG	1 cut(s)	1169
XmiI	GTMKAC	1 cut(s)	1046
XmnI	GAANNNNTTC	4 cut(s)	93, 399, 1218, 1668
XspI	CTAG	7 cut(s)	468, 750, 1094, 1170, 3411, 3548, 3660
Zsp2I	ATGCAT	2 cut(s)	1274, 2694

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.