FvH4_6g13320

Belongs to the UDP-glycosyltransferase family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Forward (+)
8103730 .. 8105468
1739 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g13320.t1

Sequence Viewer

Length: 1470 bp
ATGGCCTCTCAACAGCAGAAGCTTCACTTTGCGTTGTTTCCGTTTATGGCTCCAGGCCACATGATCCCATTGATAGACATTGCTAAATTGCTTGCGCAAGAAGGCATGATCATCACCATATTCACCACCCCACATAATGCAGCCCGCTTCAAAGCAGTTATTGACCGTGCCACAAAATCCGGGCTCCAAATCCGAGTAATCCAGCTGAAATTCCCATGTGAAGAAGTCGGATTACCTCTAACGTGTGAGAACTTTGACATGGTACATTCACACGACATGACCTTCAACTTCTTTGCAGCAATCGCCATGCTACAACCTCAAGTGGAAAAACTGTTTGCGGAGCTAACTCCGAGACCAAACTGCATAATCTCAGACATGTCTTTGCCATGGACAATCAACATCTCTCGCTCGTTTCACATTCCCAGGATCTCTTTCAGTGGAACATGTTGCTTCTGTTTCTTGTGCCTCCGCAATGTGCGCATATCCAATGTTCTTGCGAGTACAGCCTCAGAAGTGGACTATTTTGTTGTTCCTAACGTGCCTGATCGAATCGAGATGAACAAATCTCAGCTACCAGCGCCTCTAACTCCAAAATTGATTGATTTTAGTAGAGAAATGTTTGCCGCTGAGTACGATTTTTACGGCACAATTATGAACACTTTTGAAGAGTTGGAACAAGCGTATGTGGAAGACTACAAGAAGGCAAGAAATGGTAAAGTGTGGTGTGTTGGCCCTGTTTCACTCTGCAACAAAGATGACTTGGACAAAGCACAAAGGGGTCACAAGGCCTCGGTTGATGAACAGCACTGCTTGAACTGGCTTGACTCTCAGCAACCAGGTTCTGTACTTTATGCTTGTCTTGGAACTCTATGCAATGCCGTCACTGAGCAATGGATAGAGCTTGGACTAGGGCTGGAGGCATCAAAGAAACCTTTCATTTGGGTTTTGAAAGAAGGGTTTCGATCCGAAGAGTTGGAAAGGTGGATTGCAGAAAGTGGTTTCGAGGAAAGAACCAAGGAAATGAGCCTCTTGATTCGGGGTTGGGCTCCGCAGACACTGCTATTGTCACACCCTGCCATTGGGGGTTTCTTGACACATTGTGGTTGGAACTCAACACTAGAAGGCATATGTGCTGGCCTACCTATGATCACATGGCCTTTGTTTGCAGACCAATTCCTCAATGAAAAACTAGTACAACAGTTTCTAAAGATTGCTGTGAGGGTTGGAGTGGAATATCCAATGAAGTGGGGGGAGGAGGAGGAGATTGGGGTGTTGGTGAAGAAGGAAAGTGTGAAGGAAGCAATAGACAAGTTGATGGATGGAGACGAAAGCGAAGCGAGAAGAGATCGAGCCAGAGAGCTTTCGAAAATGGCTAAAAAAGCAGTGGAAGAAGGCGGATCTTCCCACCGTAACATAGCACTACTAATCGAAGACCTCATTCAACAAGGAAATTCCACAGAGAAATACTAA

Protein Analysis

490

Amino Acids

55.31

Weight (kDa)

5.53

Isoelectric Point (pI)

46.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 280 - 432 4.2e-20 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 2 cut(s) 96, 479
AciI CCGC 6 cut(s) 145, 338, 469, 624, 1049, 1395
AclWI GGATC 4 cut(s) 58, 434, 957, 1405
AcsI RAATTY 2 cut(s) 209, 1450
AdeI CACNNNGTG 1 cut(s) 1100
AfaI GTAC 5 cut(s) 264, 502, 632, 846, 1194
AfiI CCNNNNNNNGG 1 cut(s) 1079
AflIII ACRYGT 3 cut(s) 242, 375, 443
AgsI TTSAA 6 cut(s) 151, 286, 665, 814, 949, 1442
AhlI ACTAGT 1 cut(s) 1189
AjnI CCWGG 3 cut(s) 52, 422, 835
AluBI AGCT 6 cut(s) 22, 205, 343, 571, 901, 1360
AluI AGCT 6 cut(s) 22, 205, 343, 571, 901, 1360
Alw26I GTCTC 2 cut(s) 346, 1317
AlwI GGATC 4 cut(s) 58, 434, 957, 1405
AlwNI CAGNNNCTG 2 cut(s) 842, 1057
AoxI GGCC 6 cut(s) 3, 55, 730, 786, 1135, 1154
ApeKI GCWGC 2 cut(s) 140, 296
ApoI RAATTY 2 cut(s) 209, 1450
Asp700I GAANNNNTTC 2 cut(s) 932, 957
AspLEI GCGC 3 cut(s) 97, 480, 580
AspS9I GGNCC 1 cut(s) 731
AsuC2I CCSGG 1 cut(s) 181
AsuHPI GGTGA 3 cut(s) 106, 115, 1288
AsuII TTCGAA 1 cut(s) 1364
BanII GRGCYC 2 cut(s) 186, 1048
BarI GAAGNNNNNNTAC 2 cut(s) 216, 248
BbsI GAAGAC 2 cut(s) 696, 1437
BbvI GCAGC 2 cut(s) 152, 308
BccI CCATC 2 cut(s) 1309, 1313
BceAI ACGGC 2 cut(s) 658, 863
BciT130I CCWGG 3 cut(s) 54, 424, 837
BclI TGATCA 2 cut(s) 108, 1146
BcnI CCSGG 1 cut(s) 181
BcoDI GTCTC 2 cut(s) 346, 1317
BcuI ACTAGT 1 cut(s) 1189
BfaI CTAG 3 cut(s) 908, 1118, 1190
BfoI RGCGCY 1 cut(s) 581
BisI GCNGC 3 cut(s) 141, 297, 624
BlsI GCNGC 3 cut(s) 142, 298, 625
Bme1390I CCNGG 4 cut(s) 54, 181, 424, 837
BmgT120I GGNCC 1 cut(s) 731
BmiI GGNNCC 3 cut(s) 51, 185, 1047
BmrFI CCNGG 4 cut(s) 54, 181, 424, 837
BmsI GCATC 1 cut(s) 929
BpiI GAAGAC 2 cut(s) 696, 1437
BpmI CTGGAG 2 cut(s) 36, 935
Bpu14I TTCGAA 1 cut(s) 1364
BpuEI CTTGAG 1 cut(s) 303
BpuMI CCSGG 1 cut(s) 181
BsaI GGTCTC 1 cut(s) 346
BsaJI CCNNGG 4 cut(s) 386, 422, 789, 1014
Bsc4I CCNNNNNNNGG 1 cut(s) 1079
Bse1I ACTGG 1 cut(s) 821
Bse3DI GCAATG 4 cut(s) 78, 478, 880, 896
BseBI CCWGG 3 cut(s) 54, 424, 837
BseDI CCNNGG 4 cut(s) 386, 422, 789, 1014
BseGI GGATG 1 cut(s) 1324
BseLI CCNNNNNNNGG 1 cut(s) 1079
BseMI GCAATG 4 cut(s) 78, 478, 880, 896
BseMII CTCAG 6 cut(s) 384, 522, 581, 618, 842, 876
BseNI ACTGG 1 cut(s) 821
BseRI GAGGAG 3 cut(s) 1268, 1271, 1274
BseXI GCAGC 2 cut(s) 152, 308
BshFI GGCC 6 cut(s) 5, 57, 732, 788, 1137, 1156
BsiSI CCGG 1 cut(s) 180
BslI CCNNNNNNNGG 1 cut(s) 1079
BsmAI GTCTC 2 cut(s) 346, 1317
BsmBI CGTCTC 1 cut(s) 1317
BsnI GGCC 6 cut(s) 5, 57, 732, 788, 1137, 1156
Bso31I GGTCTC 1 cut(s) 346
Bsp119I TTCGAA 1 cut(s) 1364
Bsp1286I GDGCHC 2 cut(s) 186, 1048
Bsp143I GATC 8 cut(s) 63, 108, 426, 544, 962, 1146, 1345, 1397
Bsp19I CCATGG 1 cut(s) 386
BspACI CCGC 6 cut(s) 145, 338, 469, 624, 1049, 1395
BspANI GGCC 6 cut(s) 5, 57, 732, 788, 1137, 1156
BspCNI CTCAG 6 cut(s) 383, 521, 580, 619, 841, 877
BspLI GGNNCC 3 cut(s) 51, 185, 1047
BspPI GGATC 4 cut(s) 58, 434, 957, 1405
BspT104I TTCGAA 1 cut(s) 1364
BspTNI GGTCTC 1 cut(s) 346
BsrDI GCAATG 4 cut(s) 78, 478, 880, 896
BsrI ACTGG 1 cut(s) 821
BssECI CCNNGG 4 cut(s) 386, 422, 789, 1014
BssMI GATC 8 cut(s) 63, 108, 426, 544, 962, 1146, 1345, 1397
BssT1I CCWWGG 2 cut(s) 386, 1014
Bst2UI CCWGG 3 cut(s) 54, 424, 837
Bst4CI ACNGT 4 cut(s) 167, 333, 1200, 1409
Bst6I CTCTTC 3 cut(s) 660, 963, 1336
BstAPI GCANNNNNTGC 1 cut(s) 1057
BstBI TTCGAA 1 cut(s) 1364
BstC8I GCNNGC 3 cut(s) 93, 145, 1135
BstDEI CTNAG 6 cut(s) 370, 508, 567, 627, 828, 885
BstDSI CCRYGG 1 cut(s) 386
BstF5I GGATG 1 cut(s) 1324
BstH2I RGCGCY 1 cut(s) 581
BstHHI GCGC 3 cut(s) 97, 480, 580
BstKTI GATC 8 cut(s) 66, 111, 429, 547, 965, 1149, 1348, 1400
BstMAI GTCTC 2 cut(s) 346, 1317
BstMBI GATC 8 cut(s) 63, 108, 426, 544, 962, 1146, 1345, 1397
BstMWI GCNNNNNNNGC 6 cut(s) 302, 477, 503, 577, 1057, 1379
BstNI CCWGG 3 cut(s) 54, 424, 837
BstNSI RCATGY 2 cut(s) 379, 447
BstSCI CCNGG 4 cut(s) 52, 179, 422, 835
BstV1I GCAGC 2 cut(s) 152, 308
BstV2I GAAGAC 2 cut(s) 696, 1437
BstX2I RGATCY 2 cut(s) 426, 1397
BstXI CCANNNNNNTGG 1 cut(s) 1245
BstYI RGATCY 2 cut(s) 426, 1397
BsuRI GGCC 6 cut(s) 5, 57, 732, 788, 1137, 1156
BtgI CCRYGG 1 cut(s) 386
BtsCI GGATG 1 cut(s) 1324
BtsI GCAGTG 3 cut(s) 805, 1055, 1389
BtsIMutI CAGTG 5 cut(s) 442, 805, 882, 1055, 1389
Cac8I GCNNGC 3 cut(s) 93, 145, 1135
CaiI CAGNNNCTG 2 cut(s) 842, 1057
CfoI GCGC 3 cut(s) 97, 480, 580
Cfr13I GGNCC 1 cut(s) 731
CsiI ACCWGGT 1 cut(s) 835
Csp6I GTAC 5 cut(s) 263, 501, 631, 845, 1193
CviQI GTAC 5 cut(s) 263, 501, 631, 845, 1193
DdeI CTNAG 6 cut(s) 370, 508, 567, 627, 828, 885
DpnI GATC 8 cut(s) 65, 110, 428, 546, 964, 1148, 1347, 1399
DpnII GATC 8 cut(s) 63, 108, 426, 544, 962, 1146, 1345, 1397
DraIII CACNNNGTG 1 cut(s) 1100
Eam1104I CTCTTC 3 cut(s) 660, 963, 1336
EarI CTCTTC 3 cut(s) 660, 963, 1336
EciI GGCGGA 1 cut(s) 1410
Eco130I CCWWGG 2 cut(s) 386, 1014
Eco147I AGGCCT 1 cut(s) 788
Eco24I GRGCYC 2 cut(s) 186, 1048
Eco31I GGTCTC 1 cut(s) 346
EcoRII CCWGG 3 cut(s) 52, 422, 835
EcoT14I CCWWGG 2 cut(s) 386, 1014
EcoT38I GRGCYC 2 cut(s) 186, 1048
ErhI CCWWGG 2 cut(s) 386, 1014
Esp3I CGTCTC 1 cut(s) 1317
FalI AAGNNNNNCTT 2 cut(s) 11, 43
FauI CCCGC 1 cut(s) 152
FauNDI CATATG 1 cut(s) 1127
FbaI TGATCA 2 cut(s) 108, 1146
Fnu4HI GCNGC 3 cut(s) 141, 297, 624
FokI GGATG 1 cut(s) 1331
FriOI GRGCYC 2 cut(s) 186, 1048
Fsp4HI GCNGC 3 cut(s) 141, 297, 624
FspAI RTGCGCAY 1 cut(s) 479
FspBI CTAG 3 cut(s) 908, 1118, 1190
FspI TGCGCA 2 cut(s) 96, 479
GlaI GCGC 3 cut(s) 96, 479, 579
GluI GCNGC 3 cut(s) 141, 297, 624
GsuI CTGGAG 2 cut(s) 36, 935
HaeII RGCGCY 1 cut(s) 581
HaeIII GGCC 6 cut(s) 5, 57, 732, 788, 1137, 1156
HapII CCGG 1 cut(s) 180
HhaI GCGC 3 cut(s) 97, 480, 580
Hin6I GCGC 3 cut(s) 95, 478, 578
HinP1I GCGC 3 cut(s) 95, 478, 578
HindIII AAGCTT 1 cut(s) 20
HinfI GANTC 3 cut(s) 549, 824, 1033
HpaII CCGG 1 cut(s) 180
HphI GGTGA 3 cut(s) 106, 115, 1288
Hpy166II GTNNAC 1 cut(s) 517
Hpy188I TCNGA 6 cut(s) 194, 230, 351, 373, 511, 967
Hpy188III TCNNGA 3 cut(s) 553, 1030, 1090
Hpy8I GTNNAC 1 cut(s) 517
HpyAV CCTTC 8 cut(s) 95, 292, 694, 947, 1115, 1276, 1288, 1385
HpyCH4III ACNGT 4 cut(s) 167, 333, 1200, 1409
HpyCH4IV ACGT 2 cut(s) 242, 537
HpyCH4V TGCA 7 cut(s) 140, 296, 363, 747, 873, 989, 1166
HpyF10VI GCNNNNNNNGC 6 cut(s) 302, 477, 503, 577, 1057, 1379
HpyF3I CTNAG 6 cut(s) 370, 508, 567, 627, 828, 885
HpySE526I ACGT 2 cut(s) 242, 537
HspAI GCGC 3 cut(s) 95, 478, 578
Ksp22I TGATCA 2 cut(s) 108, 1146
Kzo9I GATC 8 cut(s) 63, 108, 426, 544, 962, 1146, 1345, 1397
LmnI GCTCC 4 cut(s) 55, 189, 340, 1051
Lsp1109I GCAGC 2 cut(s) 152, 308
LweI GCATC 1 cut(s) 929
MabI ACCWGGT 1 cut(s) 835
MaeI CTAG 3 cut(s) 908, 1118, 1190
MaeII ACGT 2 cut(s) 242, 537
MaeIII GTNAC 4 cut(s) 779, 880, 1065, 1409
MalI GATC 8 cut(s) 65, 110, 428, 546, 964, 1148, 1347, 1399
MboI GATC 8 cut(s) 63, 108, 426, 544, 962, 1146, 1345, 1397
MboII GAAGA 9 cut(s) 233, 677, 701, 980, 1291, 1353, 1392, 1400, 1442
MflI RGATCY 2 cut(s) 426, 1397
MhlI GDGCHC 2 cut(s) 186, 1048
MluCI AATT 6 cut(s) 86, 209, 593, 648, 1172, 1450
MlyI GAGTC 1 cut(s) 818
MmeI TCCRAC 5 cut(s) 208, 651, 954, 1085, 1204
MroXI GAANNNNTTC 2 cut(s) 932, 957
MslI CAYNNNNRTG 1 cut(s) 650
MspA1I CMGCKG 2 cut(s) 205, 626
MspI CCGG 1 cut(s) 180
MspR9I CCNGG 4 cut(s) 54, 181, 424, 837
MvaI CCWGG 3 cut(s) 54, 424, 837
MwoI GCNNNNNNNGC 6 cut(s) 302, 477, 503, 577, 1057, 1379
NciI CCSGG 1 cut(s) 181
NcoI CCATGG 1 cut(s) 386
NdeI CATATG 1 cut(s) 1127
NdeII GATC 8 cut(s) 63, 108, 426, 544, 962, 1146, 1345, 1397
NlaIV GGNNCC 3 cut(s) 51, 185, 1047
NmuCI GTSAC 3 cut(s) 779, 880, 1065
NsbI TGCGCA 2 cut(s) 96, 479
NspI RCATGY 2 cut(s) 379, 447
NspV TTCGAA 1 cut(s) 1364
PceI AGGCCT 1 cut(s) 788
PciI ACATGT 2 cut(s) 375, 443
PdmI GAANNNNTTC 2 cut(s) 932, 957
PfeI GAWTC 2 cut(s) 549, 1033
PkrI GCNGC 3 cut(s) 142, 298, 625
PleI GAGTC 1 cut(s) 818
PpsI GAGTC 1 cut(s) 818
PscI ACATGT 2 cut(s) 375, 443
Psp6I CCWGG 3 cut(s) 52, 422, 835
PspGI CCWGG 3 cut(s) 52, 422, 835
PspN4I GGNNCC 3 cut(s) 51, 185, 1047
PspPI GGNCC 1 cut(s) 731
PstNI CAGNNNCTG 2 cut(s) 842, 1057
PsuI RGATCY 2 cut(s) 426, 1397
PvuII CAGCTG 1 cut(s) 205
RsaI GTAC 5 cut(s) 264, 502, 632, 846, 1194
RsaNI GTAC 5 cut(s) 263, 501, 631, 845, 1193
RseI CAYNNNNRTG 1 cut(s) 650
SatI GCNGC 3 cut(s) 141, 297, 624
Sau3AI GATC 8 cut(s) 63, 108, 426, 544, 962, 1146, 1345, 1397
Sau96I GGNCC 1 cut(s) 731
SchI GAGTC 1 cut(s) 818
ScrFI CCNGG 4 cut(s) 54, 181, 424, 837
SduI GDGCHC 2 cut(s) 186, 1048
SexAI ACCWGGT 1 cut(s) 835
SfaNI GCATC 1 cut(s) 929
SfuI TTCGAA 1 cut(s) 1364
SmiMI CAYNNNNRTG 1 cut(s) 650
SmlI CTYRAG 1 cut(s) 318
SmoI CTYRAG 1 cut(s) 318
SpeI ACTAGT 1 cut(s) 1189
Sse9I AATT 6 cut(s) 86, 209, 593, 648, 1172, 1450
SseBI AGGCCT 1 cut(s) 788
SsiI CCGC 6 cut(s) 145, 338, 469, 624, 1049, 1395
SspMI CTAG 3 cut(s) 908, 1118, 1190
StuI AGGCCT 1 cut(s) 788
StyD4I CCNGG 4 cut(s) 52, 179, 422, 835
StyI CCWWGG 2 cut(s) 386, 1014
TaaI ACNGT 4 cut(s) 167, 333, 1200, 1409
TaiI ACGT 2 cut(s) 245, 540
TaqI TCGA 7 cut(s) 547, 552, 961, 1002, 1348, 1364, 1428
TasI AATT 6 cut(s) 86, 209, 593, 648, 1172, 1450
TatI WGTACW 3 cut(s) 500, 844, 1192
TauI GCSGC 1 cut(s) 626
TfiI GAWTC 2 cut(s) 549, 1033
TscAI CASTG 5 cut(s) 442, 812, 889, 1062, 1389
TseFI GTSAC 3 cut(s) 779, 880, 1065
TseI GCWGC 2 cut(s) 140, 296
Tsp45I GTSAC 3 cut(s) 779, 880, 1065
TspDTI ATGAA 6 cut(s) 572, 668, 813, 925, 1197, 1256
TspGWI ACGGA 1 cut(s) 30
TspRI CASTG 5 cut(s) 442, 812, 889, 1062, 1389
XapI RAATTY 2 cut(s) 209, 1450
XceI RCATGY 2 cut(s) 379, 447
XmnI GAANNNNTTC 2 cut(s) 932, 957
XspI CTAG 3 cut(s) 908, 1118, 1190
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.