Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0001852

Physical Location & Seq

Genomic Coordinates Forward (+)

9341109 .. 9349880

Gene Structure 8772 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0115200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3363 bp

ATGTTCGCCAAGCGACTCTTACAGAAGGCCGTCAACCACCACCACCATTCTCAGCATAGTTCGCAACAAGAAAGTATGACGTCAGCAGACTTGGACCTGCGAGTTGCAGCTCACTATGGTGTTCCATCCACGGCGTCCATTCTTGCTTTCGACCCCATTCAGCGGCTTCTTGCCATCGGGACATTGGATGGGAGGATTAAAGTAATTGGTGGTGACGGTATTGAAGGACTTCTTATATCCCCAAAACAATTGCCTTACAAATACATCGAGTTTCTACATAACCAGGGTTACTTGGTCAGCATCTTAAATGATAATAACATTGAGGTTTGGAATCTTGAGGGCAGATGCCTAGTTTGTTCTCTAGAGTGGGAATCAAATATAACTGCTTTTTCTGTAATCCATGGCTCGAACTTAATGTATGTGGGCGATGAGTATGCTCTATTGGCTGTGGTAAAGTATGATGCTGACGAGGGAATACTTTTGCAGTTGCCATATCATATATCTGCAGATTCATTAAGCGAAGCTGCCGAGTTTCCATTTCCTACCGACCAACCGATAGTTGGACTTCTTCCCCAACCTGGTTCATCTGGAAATAGAGTACTGATTGCGTATCAAAATGGGTTGCTTATTCTTTGGGATGTTTCCGAGGCTCAAATTGTTTTTATTGGAGGTGGTAAGGATCTCCAACTAAAGGATGGAGTTGTTAAGCCTACTGATGAAGTCAATATAGATTCTCCAGAAAATACAATAGAGCATCAACTGGGAGAGAAAGAGATAAGTGCTCTTTGTTGGGCATCATCCAATGGGTCCATTCTGGCTGTGGGATACGTAGATGGAGATATTCTGTTCTGGAACACGTCATCTGCTGCTTCCATTAAGGGTCAGCAAGCAGTGTCATCGTCTAATAATGTTGTTAAGTTACGATTATCATCATCAGAAAGAAGACTTCCTGTCATTGTCTTACAGTGGTCCACATTAAATAAATCCCATAATGATTCTGATGGACAACTATTTATCTATGGTGGTGATGAAATAGGATCAGACGAAGTTCTGACGGTTTTGACTCTTGATTGGTCTTCTGGGATGGGGAATTTAAGATGTGTTGGCCGTACGGACCTTACCCTTACTGGTTCGTTTGCAGACATGATTTTATTACCAAATTCTGCAACAATTGCGGGTAATCACAGAGCTGATGCATTTGTGTTAACAAACCCTGGGCAATTGCACTTTTATGATGAAACCAGTCTCTCGGCCCTAATATCCCAGCAAGAAAAGAAACCATCTGTCTCTGCTTTGGAGTTTCCAGTGGTGATACCTACCACTAATCCAACCATGACTGCTGCCAGACTTATTAGGACAGCTACTGGGGAGAACTCGTTAAAGTCTCTATCAGAGTTATCCTCAGTTGTGAACCTTGGCTCACTACCAACTTCATTAGATGGTACAAAATGGCCCTTGACTGGGGGTGTGCCCAGTCACTTGTCTCTTTCGAAGAGTAGTGGTATTGAGAGAGTATATTTAGCTGGATATTCAGATGGATCTGTTCGGATCTGGAATGCCACCTACCCGCTCTTATCCTTTATCTCTGTTTTAGAAGGCGAGGTGCAAGGTATAAAAGTGGCTGGTTTAAGTTCTCCAGTATCGAGAATGGATTTCTGCAGCTTCACTTTAAACTTGGCTGTTGGCAGTGAATCTGGTTTGGTTCGAATTTATAACCTCAAAGGGCGTTCAGATGGGGTAAAATTCCTCTTTGTGACCGAAACCAAATGTGAAGCCCACAGTTTGTCTCAAGGAAAAGGACCTCAATGCAGAGCTGTTTTCAGTCTTACTAATTCCCGAGTTCAAGCACTTCAGTTTGTGAAGCATGGAGGTAAACTTGCAGTGGGATTTGAATGCGGTCATGTTGCAATGCTGGACACAAGTTCCTTATCTATATTGTTCTTCATAAAAGATGCATATTTCTCTAGCTCCCCAATCATTTCAATGACTTGGAAAGAAATTACAAATCCTCAAGGCCTCTTGAAGAGTTCAAAGCTCTCGGAAACTAAATCACCAGTTCACCCTGCAGAGGAAGTAATGTTCATTCTAACCAAAGATGCAAATATACATTTAATTTGTGGAAACACGGGTAATATGATCATCCCTCGGCCATGGCACTTGAAAAAGGAGTCAATTGCAATTTCAATGTATGTTATAGATGGCAGAATTTCAGCCTCTAAAGTATCTGATGCAAATCCGCCGGAAGAGGCTTCTAAGGATACTTCAACCAAGAATGAGTCTATGGCAGGCAGTTCTCCAATTCCTATAGATTCACTTGAGGTGGACCAGGACTATAATTCAGAAAATGCATACTCTGAAGAAAGATTGTTGAATTCACTGATTTTGCTTTGTTGTGTGGATTCAGTGCGATTGTACTCCACGAAATCTGTGATTCAGGGAAACAATGAACCCATTCGAAAGGTGAAACATGCAAGACCTTGCATTTGGACGGCAACTTTGAAAAAAGTTGAAAAAGTTTGGGGATTGACTTTGCTGTTTCAGACTGGAGAGATTGAAATTAGATCTATTCCTGATTTAGAATTGGTGAAAGAAAGCTCCTTAATGTCAATTCTAAGGTGGAATTGTAAGGCAAATATGGATAAGACAATGAGTTCCGATGATGCACATATCACACTGGCAAATGGGTATGAAACGGTATTCATCTCTCTGTTAGCTGCTGAAAATGATTTCAGGATTCCAGATTCTTTGCCTTGTCTCCATGATGCAGTTCTTGCAGCTGCTGCAGATGCTGCATTAAGTGTCTCTTTAAATCAGAAGAAGAAACAGAGTACTGCCCCTGCAATATTAGGTGGTATTGTCAAAGGTTTGAAAGGAGGAAAAATGGTTCAGAGTGGAGATTCTACTGCAACTCCTAAATCCAGGTTCGATCATTTAGAAGGCATGTTTTGCAAGTCCCAGCAGTGGGACTCGGTCCCAGCTTTGGATCATCAAGAAAATCTGGAGCTTAATATAGATGACATTGAAATTGATGAACCTCTACGCATGGCATCTACTTCAACATCCCATGATGTTGATAATAAAAGGAGAGAAGGGGACTCAGAAAGGGATAGATTATTTCAAGGTGGGACTAGTGATACAAAGCCCAGAGTTAGGACTGCAGAAGAAGTTAAAGCTAAATATAGAAAAGCTGAGGATGCTTCTTCGGTGGCTTCCCAAGCAAGAAATAAGCTCATGGAGAGGGGGCAAAAACTTGAGAAACTCAGCAAGCGCACTGAGGATCTACAGAATGGAGCTGAAGATTTTTCATCAATGGCGAATGAGCTAGTCAAGACACTAGAAGCGCGAAAATGGTGGCATATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0006629 GO:0008150 GO:0008152 GO:0008194 GO:0008202 GO:0009058 GO:0009314 GO:0009411 GO:0009416 GO:0009605 GO:0009607 GO:0009628 GO:0009636 GO:0009812 GO:0009813 GO:0010224 GO:0010817 GO:0016128 GO:0016131 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0042221 GO:0042440 GO:0042445 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044464 GO:0046148 GO:0046527 GO:0050403 GO:0050502 GO:0050896 GO:0051552 GO:0051553 GO:0051554 GO:0051555 GO:0051704 GO:0051707 GO:0065007 GO:0065008 GO:0071704 GO:0080043 GO:0080044 GO:0080046 GO:0098754 GO:1901360 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko01110 map01110

Pfam Domains

Protein Families

UDPGT

Protein Analysis

1120

Amino Acids

122.36

Weight (kDa)

5.61

Isoelectric Point (pI)

43.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Synaptobrevin	PF00957	1074 - 1114	2.2e-06	Synaptobrevin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0001852)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36750 AT2G36760 AT2G36770 AT2G36780 AT2G36790 AT2G36800 AT3G53160
fragaria_vesca	FvH4_6g13320 FvH4_6g17020 FvH4_6g17030 FvH4_6g17063
malus_domestica	MD12G1104300.v1.1 MD12G1104800.v1.1
prunus_persica	Prupe.7G124200_v2.0.a1 Prupe.7G124300_v2.0.a1 Prupe.7G124400_v2.0.a1 Prupe.7G124500_v2.0.a1 Prupe.7G124600_v2.0.a1
pyrus_communis	pycom12g10290 pycom12g10300
rosa_chinensis	RchiOBHm_Chr3g0466191 RchiOBHm_Chr3g0471011 RchiOBHm_Chr3g0471051 RchiOBHm_Chr3g0471071 RchiOBHm_Chr3g0471081
rosa_laevigata	RLG00000024207 RLG00000024208 RLG00000024209 RLG00000024598
rosa_multiflora	Rmu_sc0000350.1_g000005 Rmu_sc0000839.1_g000004 Rmu_sc0000839.1_g000005 Rmu_sc0000839.1_g000006 Rmu_sc0016760.1_g000001
rosa_roxburghii	Rroxscaffold_6G00410310
rosa_rugosa	Rorug03G0079900 Rorug03G0114900 Rorug03G0115000 Rorug03G0115100 Rorug03G0115200
rosa_samantha	Rh6DG066500
rosa_wichuraiana	Rw3G011920 Rw3G015460 Rw3G015470 Rw3G015480 Rw3G015490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1713
AatII	GACGTC	1 cut(s)	83
Acc36I	ACCTGC	1 cut(s)	105
AccBSI	CCGCTC	1 cut(s)	1570
AccII	CGCG	1 cut(s)	3343
AciI	CCGC	5 cut(s)	163, 1175, 1568, 1896, 2237
AclWI	GGATC	6 cut(s)	687, 1045, 1546, 1556, 2991, 3285
AcoI	YGGCCR	2 cut(s)	1105, 2147
AcsI	RAATTY	6 cut(s)	1090, 1159, 1707, 1742, 2205, 2371
AcuI	CTGAAG	3 cut(s)	1835, 2376, 3315
AcyI	GRCGYC	2 cut(s)	80, 134
AfaI	GTAC	5 cut(s)	600, 1111, 1444, 2414, 2830
AflIII	ACRYGT	1 cut(s)	855
AhdI	GACNNNNNGTC	1 cut(s)	950
AhlI	ACTAGT	1 cut(s)	3128
AjiI	CACGTC	1 cut(s)	858
AjnI	CCWGG	5 cut(s)	282, 577, 1213, 2325, 2918
AleI	CACNNNNGTG	1 cut(s)	117
AloI	GAACNNNNNNTCC	4 cut(s)	2063, 2095, 2868, 2900
Alw21I	GWGCWC	1 cut(s)	784
Alw26I	GTCTC	7 cut(s)	1250, 1291, 1389, 1488, 1791, 2759, 2806
AlwI	GGATC	6 cut(s)	687, 1045, 1546, 1556, 2991, 3285
AlwNI	CAGNNNCTG	3 cut(s)	1364, 2780, 2789
Ama87I	CYCGRG	1 cut(s)	1836
AoxI	GGCC	6 cut(s)	27, 1105, 1251, 1451, 2014, 2147
ApoI	RAATTY	6 cut(s)	1090, 1159, 1707, 1742, 2205, 2371
ArsI	GACNNNNNNTTYG	4 cut(s)	2466, 2479, 2498, 2511
Asp700I	GAANNNNTTC	2 cut(s)	228, 2451
AspLEI	GCGC	2 cut(s)	3270, 3343
AspS9I	GGNCC	9 cut(s)	94, 807, 969, 1114, 1252, 1452, 1799, 2323, 2971
AsuHPI	GGTGA	7 cut(s)	224, 1037, 1321, 2043, 2051, 2473, 2596
AsuII	TTCGAA	3 cut(s)	1490, 1705, 2455
AvaI	CYCGRG	1 cut(s)	1836
AvaII	GGWCC	7 cut(s)	94, 807, 969, 1114, 1799, 2323, 2971
BaeGI	GKGCMC	1 cut(s)	1473
BbsI	GAAGAC	2 cut(s)	949, 1068
Bbv12I	GWGCWC	1 cut(s)	784
BbvCI	CCTCAGC	1 cut(s)	3189
BceAI	ACGGC	4 cut(s)	14, 147, 1092, 2505
BcgI	CGANNNNNNTGC	4 cut(s)	416, 450, 879, 913
BciT130I	CCWGG	5 cut(s)	284, 579, 1215, 2327, 2920
BciVI	GTATCC	2 cut(s)	818, 2251
BclI	TGATCA	1 cut(s)	2136
BcoDI	GTCTC	7 cut(s)	1250, 1291, 1389, 1488, 1791, 2759, 2806
BcuI	ACTAGT	1 cut(s)	3128
BfaI	CTAG	6 cut(s)	350, 362, 1965, 3129, 3323, 3335
BfmI	CTRYAG	7 cut(s)	504, 1657, 2064, 2304, 2781, 3156, 3281
BfuAI	ACCTGC	1 cut(s)	105
BfuI	GTATCC	2 cut(s)	818, 2251
BglII	AGATCT	1 cut(s)	2561
BmcAI	AGTACT	2 cut(s)	600, 2830
Bme1390I	CCNGG	5 cut(s)	284, 579, 1215, 2327, 2920
Bme18I	GGWCC	7 cut(s)	94, 807, 969, 1114, 1799, 2323, 2971
BmeRI	GACNNNNNGTC	1 cut(s)	950
BmeT110I	CYCGRG	1 cut(s)	1836
BmgBI	CACGTC	1 cut(s)	858
BmgT120I	GGNCC	9 cut(s)	94, 807, 969, 1114, 1252, 1452, 1799, 2323, 2971
BmiI	GGNNCC	2 cut(s)	808, 2973
BmrFI	CCNGG	5 cut(s)	284, 579, 1215, 2327, 2920
BmrI	ACTGGG	4 cut(s)	770, 1374, 1467, 1470
BmuI	ACTGGG	4 cut(s)	770, 1374, 1467, 1470
BpiI	GAAGAC	2 cut(s)	949, 1068
BplI	GAGNNNNNCTC	2 cut(s)	1385, 1417
BpmI	CTGGAG	4 cut(s)	720, 1620, 2565, 3020
Bpu10I	CCTNAGC	1 cut(s)	3189
Bpu14I	TTCGAA	3 cut(s)	1490, 1705, 2455
BpuEI	CTTGAG	5 cut(s)	356, 1773, 1995, 2336, 3272
BsaAI	YACGTR	1 cut(s)	829
BsaBI	GATNNNNATC	2 cut(s)	928, 2232
BsaHI	GRCGYC	2 cut(s)	80, 134
BsaJI	CCNNGG	9 cut(s)	129, 283, 400, 645, 1213, 1214, 1414, 2144, 2150
BsaXI	ACNNNNNCTCC	4 cut(s)	1361, 1391, 2893, 2923
Bse3DI	GCAATG	1 cut(s)	1914
Bse8I	GATNNNNATC	2 cut(s)	928, 2232
BseBI	CCWGG	5 cut(s)	284, 579, 1215, 2327, 2920
BseDI	CCNNGG	9 cut(s)	129, 283, 400, 645, 1213, 1214, 1414, 2144, 2150
BseGI	GGATG	9 cut(s)	125, 193, 643, 700, 797, 1089, 2139, 3059, 3199
BseJI	GATNNNNATC	2 cut(s)	928, 2232
BseMI	GCAATG	1 cut(s)	1914
BseMII	CTCAG	6 cut(s)	65, 1416, 3111, 3180, 3264, 3274
BseSI	GKGCMC	1 cut(s)	1473
BseYI	CCCAGC	3 cut(s)	1263, 2955, 2974
Bsh1236I	CGCG	1 cut(s)	3343
BshFI	GGCC	6 cut(s)	29, 1107, 1253, 1453, 2016, 2149
BsiHKAI	GWGCWC	1 cut(s)	784
BsiHKCI	CYCGRG	1 cut(s)	1836
BsiSI	CCGG	1 cut(s)	2240
BsiWI	CGTACG	1 cut(s)	1109
BslFI	GGGAC	6 cut(s)	193, 2938, 2957, 2978, 3107, 3139
BsmAI	GTCTC	7 cut(s)	1250, 1291, 1389, 1488, 1791, 2759, 2806
BsmFI	GGGAC	6 cut(s)	193, 2938, 2957, 2978, 3107, 3139
BsmI	GAATGC	2 cut(s)	1561, 1898
BsnI	GGCC	6 cut(s)	29, 1107, 1253, 1453, 2016, 2149
BsoBI	CYCGRG	1 cut(s)	1836
Bsp119I	TTCGAA	3 cut(s)	1490, 1705, 2455
Bsp1286I	GDGCHC	2 cut(s)	784, 1473
Bsp143I	GATC	9 cut(s)	679, 1037, 1538, 1548, 2136, 2561, 2926, 2983, 3277
Bsp19I	CCATGG	2 cut(s)	400, 2150
BspACI	CCGC	5 cut(s)	163, 1175, 1568, 1896, 2237
BspANI	GGCC	6 cut(s)	29, 1107, 1253, 1453, 2016, 2149
BspCNI	CTCAG	6 cut(s)	64, 1415, 3110, 3181, 3265, 3273
BspFNI	CGCG	1 cut(s)	3343
BspLI	GGNNCC	2 cut(s)	808, 2973
BspMAI	CTGCAG	5 cut(s)	508, 1661, 2068, 2785, 3160
BspMI	ACCTGC	1 cut(s)	105
BspPI	GGATC	6 cut(s)	687, 1045, 1546, 1556, 2991, 3285
BspT104I	TTCGAA	3 cut(s)	1490, 1705, 2455
BsrBI	CCGCTC	1 cut(s)	1570
BsrDI	GCAATG	1 cut(s)	1914
BssECI	CCNNGG	9 cut(s)	129, 283, 400, 645, 1213, 1214, 1414, 2144, 2150
BssMI	GATC	9 cut(s)	679, 1037, 1538, 1548, 2136, 2561, 2926, 2983, 3277
BssNI	GRCGYC	2 cut(s)	80, 134
BssT1I	CCWWGG	3 cut(s)	400, 1414, 2150
Bst2UI	CCWGG	5 cut(s)	284, 579, 1215, 2327, 2920
Bst4CI	ACNGT	5 cut(s)	218, 966, 1057, 1781, 2695
Bst6I	CTCTTC	3 cut(s)	1487, 2018, 2238
BstACI	GRCGYC	2 cut(s)	80, 134
BstAPI	GCANNNNNTGC	5 cut(s)	1172, 2771, 2780, 2789, 2946
BstBAI	YACGTR	1 cut(s)	829
BstBI	TTCGAA	3 cut(s)	1490, 1705, 2455
BstC8I	GCNNGC	3 cut(s)	888, 2287, 3266
BstDEI	CTNAG	8 cut(s)	51, 1402, 2253, 2612, 3097, 3189, 3260, 3273
BstDSI	CCRYGG	3 cut(s)	129, 400, 2150
BstF5I	GGATG	9 cut(s)	125, 193, 643, 700, 797, 1089, 2139, 3059, 3199
BstFNI	CGCG	1 cut(s)	3343
BstHHI	GCGC	2 cut(s)	3270, 3343
BstKTI	GATC	9 cut(s)	682, 1040, 1541, 1551, 2139, 2564, 2929, 2986, 3280
BstMAI	GTCTC	7 cut(s)	1250, 1291, 1389, 1488, 1791, 2759, 2806
BstMBI	GATC	9 cut(s)	679, 1037, 1538, 1548, 2136, 2561, 2926, 2983, 3277
BstNI	CCWGG	5 cut(s)	284, 579, 1215, 2327, 2920
BstNSI	RCATGY	2 cut(s)	2471, 2944
BstSCI	CCNGG	5 cut(s)	282, 577, 1213, 2325, 2918
BstSFI	CTRYAG	7 cut(s)	504, 1657, 2064, 2304, 2781, 3156, 3281
BstSLI	GKGCMC	1 cut(s)	1473
BstSNI	TACGTA	1 cut(s)	829
BstUI	CGCG	1 cut(s)	3343
BstV2I	GAAGAC	2 cut(s)	949, 1068
BstX2I	RGATCY	5 cut(s)	679, 1538, 1548, 2561, 3277
BstYI	RGATCY	5 cut(s)	679, 1538, 1548, 2561, 3277
BsuI	GTATCC	2 cut(s)	818, 2251
BsuRI	GGCC	6 cut(s)	29, 1107, 1253, 1453, 2016, 2149
BtgI	CCRYGG	3 cut(s)	129, 400, 2150
BtgZI	GCGATG	1 cut(s)	441
BtrI	CACGTC	1 cut(s)	858
BtsCI	GGATG	9 cut(s)	125, 193, 643, 700, 797, 1089, 2139, 3059, 3199
BtsI	GCAGTG	4 cut(s)	897, 1693, 1887, 2966
BveI	ACCTGC	1 cut(s)	105
Cac8I	GCNNGC	3 cut(s)	888, 2287, 3266
CaiI	CAGNNNCTG	3 cut(s)	1364, 2780, 2789
CfoI	GCGC	2 cut(s)	3270, 3343
Cfr13I	GGNCC	9 cut(s)	94, 807, 969, 1114, 1252, 1452, 1799, 2323, 2971
CseI	GACGC	1 cut(s)	123
CsiI	ACCWGGT	1 cut(s)	577
Csp6I	GTAC	5 cut(s)	599, 1110, 1443, 2413, 2829
CviQI	GTAC	5 cut(s)	599, 1110, 1443, 2413, 2829
DdeI	CTNAG	8 cut(s)	51, 1402, 2253, 2612, 3097, 3189, 3260, 3273
DpnI	GATC	9 cut(s)	681, 1039, 1540, 1550, 2138, 2563, 2928, 2985, 3279
DpnII	GATC	9 cut(s)	679, 1037, 1538, 1548, 2136, 2561, 2926, 2983, 3277
DraI	TTTAAA	2 cut(s)	1671, 2808
DriI	GACNNNNNGTC	1 cut(s)	950
EaeI	YGGCCR	2 cut(s)	1105, 2147
Eam1104I	CTCTTC	3 cut(s)	1487, 2018, 2238
Eam1105I	GACNNNNNGTC	1 cut(s)	950
EarI	CTCTTC	3 cut(s)	1487, 2018, 2238
EciI	GGCGGA	1 cut(s)	2226
Eco105I	TACGTA	1 cut(s)	829
Eco130I	CCWWGG	3 cut(s)	400, 1414, 2150
Eco147I	AGGCCT	1 cut(s)	2016
Eco47I	GGWCC	7 cut(s)	94, 807, 969, 1114, 1799, 2323, 2971
Eco57I	CTGAAG	3 cut(s)	1835, 2376, 3315
Eco88I	CYCGRG	1 cut(s)	1836
EcoO109I	RGGNCCY	1 cut(s)	1799
EcoRI	GAATTC	1 cut(s)	2371
EcoRII	CCWGG	5 cut(s)	282, 577, 1213, 2325, 2918
EcoT14I	CCWWGG	3 cut(s)	400, 1414, 2150
EcoT22I	ATGCAT	3 cut(s)	1198, 1957, 2350
ErhI	CCWWGG	3 cut(s)	400, 1414, 2150
FalI	AAGNNNNNCTT	5 cut(s)	34, 216, 248, 2788, 2820
FaqI	GGGAC	6 cut(s)	193, 2938, 2957, 2978, 3107, 3139
FauI	CCCGC	2 cut(s)	1168, 1575
FbaI	TGATCA	1 cut(s)	2136
FokI	GGATG	9 cut(s)	112, 200, 650, 707, 784, 1096, 2126, 3046, 3206
FspBI	CTAG	6 cut(s)	350, 362, 1965, 3129, 3323, 3335
GlaI	GCGC	2 cut(s)	3269, 3342
GsaI	CCCAGC	3 cut(s)	1267, 2959, 2978
GsuI	CTGGAG	4 cut(s)	720, 1620, 2565, 3020
HaeIII	GGCC	6 cut(s)	29, 1107, 1253, 1453, 2016, 2149
HapII	CCGG	1 cut(s)	2240
HgaI	GACGC	1 cut(s)	123
HhaI	GCGC	2 cut(s)	3270, 3343
Hin1I	GRCGYC	2 cut(s)	80, 134
Hin6I	GCGC	2 cut(s)	3268, 3341
HinP1I	GCGC	2 cut(s)	3268, 3341
HincII	GTYRAC	2 cut(s)	34, 1206
HindII	GTYRAC	2 cut(s)	34, 1206
HpaI	GTTAAC	1 cut(s)	1206
HpaII	CCGG	1 cut(s)	2240
HphI	GGTGA	7 cut(s)	224, 1037, 1321, 2043, 2051, 2473, 2596
Hpy166II	GTNNAC	7 cut(s)	34, 972, 1206, 1411, 1874, 2059, 2323
Hpy8I	GTNNAC	7 cut(s)	34, 972, 1206, 1411, 1874, 2059, 2323
HpyAV	CCTTC	5 cut(s)	19, 218, 1589, 2930, 3083
HpyCH4III	ACNGT	5 cut(s)	218, 966, 1057, 1781, 2695
HpyCH4IV	ACGT	3 cut(s)	80, 828, 857
HpyF3I	CTNAG	8 cut(s)	51, 1402, 2253, 2612, 3097, 3189, 3260, 3273
HpySE526I	ACGT	3 cut(s)	80, 828, 857
Hsp92I	GRCGYC	2 cut(s)	80, 134
HspAI	GCGC	2 cut(s)	3268, 3341
Ksp22I	TGATCA	1 cut(s)	2136
KspAI	GTTAAC	1 cut(s)	1206
Kzo9I	GATC	9 cut(s)	679, 1037, 1538, 1548, 2136, 2561, 2926, 2983, 3277
LmnI	GCTCC	4 cut(s)	1973, 2600, 3001, 3290
MabI	ACCWGGT	1 cut(s)	577
MaeI	CTAG	6 cut(s)	350, 362, 1965, 3129, 3323, 3335
MaeII	ACGT	3 cut(s)	80, 828, 857
MaeIII	GTNAC	5 cut(s)	212, 287, 918, 1475, 1753
MalI	GATC	9 cut(s)	681, 1039, 1540, 1550, 2138, 2563, 2928, 2985, 3279
MbiI	CCGCTC	1 cut(s)	1570
MboI	GATC	9 cut(s)	679, 1037, 1538, 1548, 2136, 2561, 2926, 2983, 3277
MfeI	CAATTG	4 cut(s)	248, 1170, 1220, 2172
MflI	RGATCY	5 cut(s)	679, 1538, 1548, 2561, 3277
MhlI	GDGCHC	2 cut(s)	784, 1473
MlyI	GAGTC	6 cut(s)	9, 1057, 2177, 2285, 2960, 3089
MmeI	TCCRAC	3 cut(s)	541, 709, 1352
Mph1103I	ATGCAT	3 cut(s)	1198, 1957, 2350
MroXI	GAANNNNTTC	2 cut(s)	228, 2451
MslI	CAYNNNNRTG	3 cut(s)	117, 1230, 1982
MspA1I	CMGCKG	2 cut(s)	163, 2777
MspI	CCGG	1 cut(s)	2240
MspR9I	CCNGG	5 cut(s)	284, 579, 1215, 2327, 2920
MunI	CAATTG	4 cut(s)	248, 1170, 1220, 2172
Mva1269I	GAATGC	2 cut(s)	1561, 1898
MvaI	CCWGG	5 cut(s)	284, 579, 1215, 2327, 2920
MvnI	CGCG	1 cut(s)	3343
NcoI	CCATGG	2 cut(s)	400, 2150
NdeII	GATC	9 cut(s)	679, 1037, 1538, 1548, 2136, 2561, 2926, 2983, 3277
NlaIV	GGNNCC	2 cut(s)	808, 2973
NmeAIII	GCCGAG	3 cut(s)	553, 1229, 2125
NmuCI	GTSAC	3 cut(s)	212, 1475, 1753
NsiI	ATGCAT	3 cut(s)	1198, 1957, 2350
NspI	RCATGY	2 cut(s)	2471, 2944
NspV	TTCGAA	3 cut(s)	1490, 1705, 2455
OliI	CACNNNNGTG	1 cut(s)	117
PasI	CCCWGGG	1 cut(s)	1214
PceI	AGGCCT	1 cut(s)	2016
PctI	GAATGC	2 cut(s)	1561, 1898
PdmI	GAANNNNTTC	2 cut(s)	228, 2451
Pfl23II	CGTACG	1 cut(s)	1109
PflFI	GACNNNGTC	1 cut(s)	2969
PleI	GAGTC	6 cut(s)	9, 1057, 2176, 2284, 2960, 3089
PpsI	GAGTC	6 cut(s)	9, 1057, 2176, 2284, 2960, 3089
Ppu21I	YACGTR	1 cut(s)	829
PpuMI	RGGWCCY	1 cut(s)	1799
PsiI	TTATAA	1 cut(s)	1713
Psp5II	RGGWCCY	1 cut(s)	1799
Psp6I	CCWGG	5 cut(s)	282, 577, 1213, 2325, 2918
PspFI	CCCAGC	3 cut(s)	1263, 2955, 2974
PspGI	CCWGG	5 cut(s)	282, 577, 1213, 2325, 2918
PspLI	CGTACG	1 cut(s)	1109
PspN4I	GGNNCC	2 cut(s)	808, 2973
PspPI	GGNCC	9 cut(s)	94, 807, 969, 1114, 1252, 1452, 1799, 2323, 2971
PspPPI	RGGWCCY	1 cut(s)	1799
PstI	CTGCAG	5 cut(s)	508, 1661, 2068, 2785, 3160
PstNI	CAGNNNCTG	3 cut(s)	1364, 2780, 2789
PsuI	RGATCY	5 cut(s)	679, 1538, 1548, 2561, 3277
PsyI	GACNNNGTC	1 cut(s)	2969
PvuII	CAGCTG	1 cut(s)	2777
RsaI	GTAC	5 cut(s)	600, 1111, 1444, 2414, 2830
RsaNI	GTAC	5 cut(s)	599, 1110, 1443, 2413, 2829
RseI	CAYNNNNRTG	3 cut(s)	117, 1230, 1982
Sau3AI	GATC	9 cut(s)	679, 1037, 1538, 1548, 2136, 2561, 2926, 2983, 3277
Sau96I	GGNCC	9 cut(s)	94, 807, 969, 1114, 1252, 1452, 1799, 2323, 2971
ScaI	AGTACT	2 cut(s)	600, 2830
SchI	GAGTC	6 cut(s)	9, 1057, 2177, 2285, 2960, 3089
ScrFI	CCNGG	5 cut(s)	284, 579, 1215, 2327, 2920
SduI	GDGCHC	2 cut(s)	784, 1473
SexAI	ACCWGGT	1 cut(s)	577
SfcI	CTRYAG	7 cut(s)	504, 1657, 2064, 2304, 2781, 3156, 3281
SfuI	TTCGAA	3 cut(s)	1490, 1705, 2455
SinI	GGWCC	7 cut(s)	94, 807, 969, 1114, 1799, 2323, 2971
SmiMI	CAYNNNNRTG	3 cut(s)	117, 1230, 1982
SmlI	CTYRAG	5 cut(s)	335, 1788, 2010, 2315, 3251
SmoI	CTYRAG	5 cut(s)	335, 1788, 2010, 2315, 3251
SnaBI	TACGTA	1 cut(s)	829
SpeI	ACTAGT	1 cut(s)	3128
SseBI	AGGCCT	1 cut(s)	2016
SsiI	CCGC	5 cut(s)	163, 1175, 1568, 1896, 2237
SspI	AATATT	1 cut(s)	2844
SspMI	CTAG	6 cut(s)	350, 362, 1965, 3129, 3323, 3335
StuI	AGGCCT	1 cut(s)	2016
StyD4I	CCNGG	5 cut(s)	282, 577, 1213, 2325, 2918
StyI	CCWWGG	3 cut(s)	400, 1414, 2150
TaaI	ACNGT	5 cut(s)	218, 966, 1057, 1781, 2695
TaiI	ACGT	3 cut(s)	83, 831, 860
TaqI	TCGA	8 cut(s)	150, 267, 407, 1490, 1643, 1705, 2455, 2925
TaqII	GACCGA	2 cut(s)	1772, 2959
TatI	WGTACW	3 cut(s)	598, 2412, 2828
TauI	GCSGC	1 cut(s)	166
TseFI	GTSAC	3 cut(s)	212, 1475, 1753
Tsp45I	GTSAC	3 cut(s)	212, 1475, 1753
TspGWI	ACGGA	1 cut(s)	1127
Tth111I	GACNNNGTC	1 cut(s)	2969
VpaK11BI	GGWCC	7 cut(s)	94, 807, 969, 1114, 1799, 2323, 2971
XapI	RAATTY	6 cut(s)	1090, 1159, 1707, 1742, 2205, 2371
XbaI	TCTAGA	1 cut(s)	361
XceI	RCATGY	2 cut(s)	2471, 2944
XcmI	CCANNNNNNNNNTGG	4 cut(s)	181, 557, 692, 817
XmnI	GAANNNNTTC	2 cut(s)	228, 2451
XspI	CTAG	6 cut(s)	350, 362, 1965, 3129, 3323, 3335
ZraI	GACGTC	1 cut(s)	81
ZrmI	AGTACT	2 cut(s)	600, 2830
Zsp2I	ATGCAT	3 cut(s)	1198, 1957, 2350

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.