Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0001852

Physical Location & Seq

Genomic Coordinates Reverse (-)

6791453 .. 6803616

Gene Structure 12164 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG066500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1263 bp

ATGGCCTCTCAACAGCAGAAGCTTCACTTTGCGTTGTTTCCGTTTATGGCTCCAGGCCACATGATCCCATTGATCGACATTGCTAAATTGCTTGCACAAGAAGGCATGATCATCACCATATTCACCACACCACATAATGCAGCCCGTTTCAAAGCAGCTCTTGATCGCGCCACAAAATCCGAGCTCCAAATCCGAGTAATCCAGCTGAAATTCACATGTGAAGAAGTCGGATTACCTCAAGGGTGTGAGAACTTTGACAGGGTACATTCACACGACATGACATTTAACTTCTTTGCTGCAATCGCCATGCTACAACCGGAAGTGGAGAAACTGTTTGCGGAGTTAACTCCGAAGCCAAATTGCATAATCTCGGACATGTCTTTGCCATGGACAACCAACATCTCACGCACGTTTCACATTCCCAGGATCTCTTTCAGTGGAACATGTTGCTTCTGTTTCTTGTGCCTCCGCAATGTGCGCATATCCAATGTCCTTGAGAATACAGCCTCAGAATTGGACTATTTTGTTGTGCCTGACGTGCCTGATCGAATTGAGATGAACAAAGCTCAGCTACCAGGGCCTCTGAGTCCAAAAATGATTGATTTTACTAGAGAAATGTTTGCCTCCGAGTACGATTCATACGGCACAATTATGAATACTTTTGAAGAATTGGAGCAAGCGGAGGCTATTGAGACATACTCTAGTGAAGTTAGAAGAGTTGGAGAGGAGCTTCTCAGGTCTCTATCGTTAATCATGGGGATGGAGAAGGATGCTGTTCTCGGACTACATCAAGAGTTGGTCCAACCTCTGTCTGTGGCCTACTATCCTCAGTGCTCAATGCCTGAGAAAGTACTTGGTCTAAGTGCACACTCAGACAAAGGGAGCTTAGCCATAGTTATGCAAGAAGATGATGTAATGGGACTACAAATCAAACACAACGGAAAATGGGTACCAATCAAGCCCATTCACGATGCCTTCATTGTGAATGTTGGAGATATTATTGAGATATGGAGTAATGGGAAGTACAAGAGCATTGAACACAGAGTTGTAACAAACGAAAGCAAGGCGAGGATCTCTTATTCAACTTTTTGTTTACCACATCAAAATGCAGAAATTGAACCCCTGGATCAAATGGTTCTTGCGTCACCGGGGTCTTTTCCGTTGTACAAGAAAGTCACCTATGGGGATTATCTGAGGGAAACCAAGAAGATGAAATCTGAGGGGAAGGCACATGTCGTTGAAGTTGCCAAGATTGCAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0006629 GO:0008150 GO:0008152 GO:0008194 GO:0008202 GO:0009058 GO:0009314 GO:0009411 GO:0009416 GO:0009605 GO:0009607 GO:0009628 GO:0009636 GO:0009812 GO:0009813 GO:0010224 GO:0010817 GO:0016128 GO:0016131 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0042221 GO:0042440 GO:0042445 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044464 GO:0046148 GO:0046527 GO:0050403 GO:0050502 GO:0050896 GO:0051552 GO:0051553 GO:0051554 GO:0051555 GO:0051704 GO:0051707 GO:0065007 GO:0065008 GO:0071704 GO:0080043 GO:0080044 GO:0080046 GO:0098754 GO:1901360 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko01110 map01110

Pfam Domains

Protein Families

UDPGT

Protein Analysis

420

Amino Acids

47.36

Weight (kDa)

5.75

Isoelectric Point (pI)

42.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
2OG-FeII_Oxy	PF03171	270 - 366	3.5e-29	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001852)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36750 AT2G36760 AT2G36770 AT2G36780 AT2G36790 AT2G36800 AT3G53160
fragaria_vesca	FvH4_6g13320 FvH4_6g17020 FvH4_6g17030 FvH4_6g17063
malus_domestica	MD12G1104300.v1.1 MD12G1104800.v1.1
prunus_persica	Prupe.7G124200_v2.0.a1 Prupe.7G124300_v2.0.a1 Prupe.7G124400_v2.0.a1 Prupe.7G124500_v2.0.a1 Prupe.7G124600_v2.0.a1
pyrus_communis	pycom12g10290 pycom12g10300
rosa_chinensis	RchiOBHm_Chr3g0466191 RchiOBHm_Chr3g0471011 RchiOBHm_Chr3g0471051 RchiOBHm_Chr3g0471071 RchiOBHm_Chr3g0471081
rosa_laevigata	RLG00000024207 RLG00000024208 RLG00000024209 RLG00000024598
rosa_multiflora	Rmu_sc0000350.1_g000005 Rmu_sc0000839.1_g000004 Rmu_sc0000839.1_g000005 Rmu_sc0000839.1_g000006 Rmu_sc0016760.1_g000001
rosa_roxburghii	Rroxscaffold_6G00410310
rosa_rugosa	Rorug03G0079900 Rorug03G0114900 Rorug03G0115000 Rorug03G0115100 Rorug03G0115200
rosa_samantha	Rh6DG066500
rosa_wichuraiana	Rw3G011920 Rw3G015460 Rw3G015470 Rw3G015480 Rw3G015490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	479
Acc65I	GGTACC	1 cut(s)	949
AccB1I	GGYRCC	1 cut(s)	949
AccII	CGCG	1 cut(s)	168
AciI	CCGC	3 cut(s)	338, 469, 680
AclWI	GGATC	4 cut(s)	58, 434, 1079, 1134
AcsI	RAATTY	1 cut(s)	209
AfaI	GTAC	6 cut(s)	264, 632, 852, 951, 1025, 1166
AflIII	ACRYGT	4 cut(s)	215, 375, 443, 1231
AgsI	TTSAA	6 cut(s)	151, 665, 1037, 1083, 1118, 1241
AjiI	CACGTC	1 cut(s)	538
AjnI	CCWGG	4 cut(s)	52, 422, 574, 1122
AluBI	AGCT	8 cut(s)	22, 158, 184, 205, 566, 571, 730, 885
AluI	AGCT	8 cut(s)	22, 158, 184, 205, 566, 571, 730, 885
Alw21I	GWGCWC	3 cut(s)	186, 836, 868
Alw26I	GTCTC	2 cut(s)	686, 744
Alw44I	GTGCAC	1 cut(s)	864
AlwI	GGATC	4 cut(s)	58, 434, 1079, 1134
AoxI	GGCC	4 cut(s)	3, 55, 578, 816
ApaLI	GTGCAC	1 cut(s)	864
ApeKI	GCWGC	3 cut(s)	140, 155, 296
ApoI	RAATTY	1 cut(s)	209
Asp718I	GGTACC	1 cut(s)	949
AspLEI	GCGC	2 cut(s)	170, 480
AspS9I	GGNCC	2 cut(s)	578, 799
AsuC2I	CCSGG	1 cut(s)	1149
AsuHPI	GGTGA	4 cut(s)	106, 115, 1137, 1168
AvaII	GGWCC	1 cut(s)	799
BaeGI	GKGCMC	1 cut(s)	868
BanI	GGYRCC	1 cut(s)	949
BanII	GRGCYC	1 cut(s)	186
BarI	GAAGNNNNNNTAC	2 cut(s)	216, 248
Bbv12I	GWGCWC	3 cut(s)	186, 836, 868
BbvI	GCAGC	3 cut(s)	152, 167, 283
BccI	CCATC	1 cut(s)	754
BceAI	ACGGC	1 cut(s)	658
BciT130I	CCWGG	4 cut(s)	54, 424, 576, 1124
BclI	TGATCA	1 cut(s)	108
BcnI	CCSGG	1 cut(s)	1149
BcoDI	GTCTC	2 cut(s)	686, 744
BfaI	CTAG	2 cut(s)	609, 702
BisI	GCNGC	3 cut(s)	141, 156, 297
BlpI	GCTNAGC	2 cut(s)	567, 886
BlsI	GCNGC	3 cut(s)	142, 157, 298
BmcAI	AGTACT	1 cut(s)	852
Bme1390I	CCNGG	5 cut(s)	54, 424, 576, 1124, 1149
Bme18I	GGWCC	1 cut(s)	799
BmgBI	CACGTC	1 cut(s)	538
BmgT120I	GGNCC	2 cut(s)	578, 799
BmiI	GGNNCC	2 cut(s)	51, 951
BmrFI	CCNGG	5 cut(s)	54, 424, 576, 1124, 1149
BmsI	GCATC	2 cut(s)	760, 961
BplI	GAGNNNNNCTC	2 cut(s)	683, 715
BpmI	CTGGAG	1 cut(s)	36
Bpu1102I	GCTNAGC	2 cut(s)	567, 886
BpuEI	CTTGAG	2 cut(s)	222, 515
BpuMI	CCSGG	1 cut(s)	1149
BsaI	GGTCTC	1 cut(s)	744
BsaJI	CCNNGG	5 cut(s)	386, 422, 575, 1122, 1148
BsaWI	WCCGGW	1 cut(s)	316
BsaXI	ACNNNNNCTCC	2 cut(s)	317, 347
Bse3DI	GCAATG	2 cut(s)	78, 478
BseBI	CCWGG	4 cut(s)	54, 424, 576, 1124
BseDI	CCNNGG	5 cut(s)	386, 422, 575, 1122, 1148
BseGI	GGATG	2 cut(s)	765, 775
BseMI	GCAATG	2 cut(s)	78, 478
BseMII	CTCAG	9 cut(s)	522, 575, 581, 748, 834, 842, 885, 1184, 1209
BseRI	GAGGAG	1 cut(s)	740
BseSI	GKGCMC	1 cut(s)	868
BseXI	GCAGC	3 cut(s)	152, 167, 283
Bsh1236I	CGCG	1 cut(s)	168
BshFI	GGCC	4 cut(s)	5, 57, 580, 818
BshNI	GGYRCC	1 cut(s)	949
BsiHKAI	GWGCWC	3 cut(s)	186, 836, 868
BsiSI	CCGG	2 cut(s)	317, 1148
BslFI	GGGAC	1 cut(s)	933
BsmAI	GTCTC	2 cut(s)	686, 744
BsmFI	GGGAC	1 cut(s)	933
BsnI	GGCC	4 cut(s)	5, 57, 580, 818
Bso31I	GGTCTC	1 cut(s)	744
Bsp1286I	GDGCHC	3 cut(s)	186, 836, 868
Bsp1407I	TGTACA	1 cut(s)	1164
Bsp143I	GATC	8 cut(s)	63, 72, 108, 163, 426, 544, 1071, 1126
Bsp1720I	GCTNAGC	2 cut(s)	567, 886
Bsp19I	CCATGG	1 cut(s)	386
BspACI	CCGC	3 cut(s)	338, 469, 680
BspANI	GGCC	4 cut(s)	5, 57, 580, 818
BspCNI	CTCAG	9 cut(s)	521, 576, 580, 747, 835, 841, 884, 1185, 1210
BspFNI	CGCG	1 cut(s)	168
BspLI	GGNNCC	2 cut(s)	51, 951
BspPI	GGATC	4 cut(s)	58, 434, 1079, 1134
BspT107I	GGYRCC	1 cut(s)	949
BspTNI	GGTCTC	1 cut(s)	744
BsrDI	GCAATG	2 cut(s)	78, 478
BsrGI	TGTACA	1 cut(s)	1164
BssECI	CCNNGG	5 cut(s)	386, 422, 575, 1122, 1148
BssMI	GATC	8 cut(s)	63, 72, 108, 163, 426, 544, 1071, 1126
BssT1I	CCWWGG	1 cut(s)	386
Bst2UI	CCWGG	4 cut(s)	54, 424, 576, 1124
Bst4CI	ACNGT	1 cut(s)	333
Bst6I	CTCTTC	1 cut(s)	709
BstAUI	TGTACA	1 cut(s)	1164
BstC8I	GCNNGC	2 cut(s)	93, 678
BstDSI	CCRYGG	1 cut(s)	386
BstF5I	GGATG	2 cut(s)	765, 775
BstFNI	CGCG	1 cut(s)	168
BstHHI	GCGC	2 cut(s)	170, 480
BstKTI	GATC	8 cut(s)	66, 75, 111, 166, 429, 547, 1074, 1129
BstMAI	GTCTC	2 cut(s)	686, 744
BstMBI	GATC	8 cut(s)	63, 72, 108, 163, 426, 544, 1071, 1126
BstMWI	GCNNNNNNNGC	5 cut(s)	302, 477, 538, 577, 1253
BstNI	CCWGG	4 cut(s)	54, 424, 576, 1124
BstNSI	RCATGY	4 cut(s)	219, 379, 447, 1235
BstSCI	CCNGG	5 cut(s)	52, 422, 574, 1122, 1147
BstSLI	GKGCMC	1 cut(s)	868
BstUI	CGCG	1 cut(s)	168
BstV1I	GCAGC	3 cut(s)	152, 167, 283
BstX2I	RGATCY	2 cut(s)	426, 1071
BstYI	RGATCY	2 cut(s)	426, 1071
BsuRI	GGCC	4 cut(s)	5, 57, 580, 818
BtgI	CCRYGG	1 cut(s)	386
BtrI	CACGTC	1 cut(s)	538
BtsCI	GGATG	2 cut(s)	765, 775
BtsIMutI	CAGTG	2 cut(s)	442, 836
Cac8I	GCNNGC	2 cut(s)	93, 678
CfoI	GCGC	2 cut(s)	170, 480
Cfr13I	GGNCC	2 cut(s)	578, 799
CseI	GACGC	1 cut(s)	1131
Csp6I	GTAC	6 cut(s)	263, 631, 851, 950, 1024, 1165
CviQI	GTAC	6 cut(s)	263, 631, 851, 950, 1024, 1165
DpnI	GATC	8 cut(s)	65, 74, 110, 165, 428, 546, 1073, 1128
DpnII	GATC	8 cut(s)	63, 72, 108, 163, 426, 544, 1071, 1126
Eam1104I	CTCTTC	1 cut(s)	709
EarI	CTCTTC	1 cut(s)	709
Ecl136II	GAGCTC	1 cut(s)	184
Eco130I	CCWWGG	1 cut(s)	386
Eco24I	GRGCYC	1 cut(s)	186
Eco31I	GGTCTC	1 cut(s)	744
Eco47I	GGWCC	1 cut(s)	799
Eco53kI	GAGCTC	1 cut(s)	184
EcoICRI	GAGCTC	1 cut(s)	184
EcoO109I	RGGNCCY	1 cut(s)	578
EcoRII	CCWGG	4 cut(s)	52, 422, 574, 1122
EcoT14I	CCWWGG	1 cut(s)	386
EcoT38I	GRGCYC	1 cut(s)	186
ErhI	CCWWGG	1 cut(s)	386
FalI	AAGNNNNNCTT	4 cut(s)	11, 43, 144, 176
FaqI	GGGAC	1 cut(s)	933
FbaI	TGATCA	1 cut(s)	108
Fnu4HI	GCNGC	3 cut(s)	141, 156, 297
FokI	GGATG	2 cut(s)	772, 782
FriOI	GRGCYC	1 cut(s)	186
Fsp4HI	GCNGC	3 cut(s)	141, 156, 297
FspAI	RTGCGCAY	1 cut(s)	479
FspBI	CTAG	2 cut(s)	609, 702
FspI	TGCGCA	1 cut(s)	479
GlaI	GCGC	2 cut(s)	169, 479
GluI	GCNGC	3 cut(s)	141, 156, 297
GsuI	CTGGAG	1 cut(s)	36
HaeIII	GGCC	4 cut(s)	5, 57, 580, 818
HapII	CCGG	2 cut(s)	317, 1148
HgaI	GACGC	1 cut(s)	1131
HhaI	GCGC	2 cut(s)	170, 480
Hin6I	GCGC	2 cut(s)	168, 478
HinP1I	GCGC	2 cut(s)	168, 478
HincII	GTYRAC	1 cut(s)	345
HindII	GTYRAC	1 cut(s)	345
HindIII	AAGCTT	1 cut(s)	20
HinfI	GANTC	2 cut(s)	586, 635
HpaI	GTTAAC	1 cut(s)	345
HpaII	CCGG	2 cut(s)	317, 1148
HphI	GGTGA	4 cut(s)	106, 115, 1137, 1168
Hpy166II	GTNNAC	3 cut(s)	345, 866, 1094
Hpy188III	TCNNGA	3 cut(s)	161, 791, 968
Hpy8I	GTNNAC	3 cut(s)	345, 866, 1094
HpyAV	CCTTC	4 cut(s)	95, 760, 985, 1219
HpyCH4III	ACNGT	1 cut(s)	333
HpyCH4IV	ACGT	2 cut(s)	410, 537
HpyCH4V	TGCA	8 cut(s)	95, 140, 299, 363, 866, 901, 1109, 1256
HpyF10VI	GCNNNNNNNGC	5 cut(s)	302, 477, 538, 577, 1253
HpySE526I	ACGT	2 cut(s)	410, 537
HspAI	GCGC	2 cut(s)	168, 478
KpnI	GGTACC	1 cut(s)	953
Ksp22I	TGATCA	1 cut(s)	108
KspAI	GTTAAC	1 cut(s)	345
Kzo9I	GATC	8 cut(s)	63, 72, 108, 163, 426, 544, 1071, 1126
LmnI	GCTCC	5 cut(s)	55, 189, 673, 727, 882
Lsp1109I	GCAGC	3 cut(s)	152, 167, 283
LweI	GCATC	2 cut(s)	760, 961
MaeI	CTAG	2 cut(s)	609, 702
MaeII	ACGT	2 cut(s)	410, 537
MaeIII	GTNAC	3 cut(s)	1048, 1143, 1174
MalI	GATC	8 cut(s)	65, 74, 110, 165, 428, 546, 1073, 1128
MboI	GATC	8 cut(s)	63, 72, 108, 163, 426, 544, 1071, 1126
MboII	GAAGA	5 cut(s)	233, 677, 726, 917, 1219
MflI	RGATCY	2 cut(s)	426, 1071
MhlI	GDGCHC	3 cut(s)	186, 836, 868
MluCI	AATT	8 cut(s)	86, 209, 358, 512, 549, 648, 668, 1113
MlyI	GAGTC	1 cut(s)	595
MmeI	TCCRAC	4 cut(s)	208, 700, 826, 970
MseI	TTAA	3 cut(s)	285, 344, 749
MslI	CAYNNNNRTG	4 cut(s)	650, 758, 896, 1104
MspA1I	CMGCKG	1 cut(s)	205
MspI	CCGG	2 cut(s)	317, 1148
MspR9I	CCNGG	5 cut(s)	54, 424, 576, 1124, 1149
MvaI	CCWGG	4 cut(s)	54, 424, 576, 1124
MvnI	CGCG	1 cut(s)	168
MwoI	GCNNNNNNNGC	5 cut(s)	302, 477, 538, 577, 1253
NciI	CCSGG	1 cut(s)	1149
NcoI	CCATGG	1 cut(s)	386
NdeII	GATC	8 cut(s)	63, 72, 108, 163, 426, 544, 1071, 1126
NlaIV	GGNNCC	2 cut(s)	51, 951
NmuCI	GTSAC	2 cut(s)	1143, 1174
NsbI	TGCGCA	1 cut(s)	479
NspI	RCATGY	4 cut(s)	219, 379, 447, 1235
PciI	ACATGT	4 cut(s)	215, 375, 443, 1231
PfeI	GAWTC	1 cut(s)	635
PkrI	GCNGC	3 cut(s)	142, 157, 298
PleI	GAGTC	1 cut(s)	594
PpsI	GAGTC	1 cut(s)	594
PscI	ACATGT	4 cut(s)	215, 375, 443, 1231
Psp124BI	GAGCTC	1 cut(s)	186
Psp6I	CCWGG	4 cut(s)	52, 422, 574, 1122
PspGI	CCWGG	4 cut(s)	52, 422, 574, 1122
PspN4I	GGNNCC	2 cut(s)	51, 951
PspPI	GGNCC	2 cut(s)	578, 799
PsuI	RGATCY	2 cut(s)	426, 1071
PvuII	CAGCTG	1 cut(s)	205
RsaI	GTAC	6 cut(s)	264, 632, 852, 951, 1025, 1166
RsaNI	GTAC	6 cut(s)	263, 631, 851, 950, 1024, 1165
RseI	CAYNNNNRTG	4 cut(s)	650, 758, 896, 1104
SacI	GAGCTC	1 cut(s)	186
SaqAI	TTAA	3 cut(s)	285, 344, 749
SatI	GCNGC	3 cut(s)	141, 156, 297
Sau3AI	GATC	8 cut(s)	63, 72, 108, 163, 426, 544, 1071, 1126
Sau96I	GGNCC	2 cut(s)	578, 799
ScaI	AGTACT	1 cut(s)	852
SchI	GAGTC	1 cut(s)	595
ScrFI	CCNGG	5 cut(s)	54, 424, 576, 1124, 1149
SduI	GDGCHC	3 cut(s)	186, 836, 868
SfaNI	GCATC	2 cut(s)	760, 961
SinI	GGWCC	1 cut(s)	799
SmiMI	CAYNNNNRTG	4 cut(s)	650, 758, 896, 1104
SmlI	CTYRAG	2 cut(s)	237, 494
SmoI	CTYRAG	2 cut(s)	237, 494
Sse9I	AATT	8 cut(s)	86, 209, 358, 512, 549, 648, 668, 1113
SsiI	CCGC	3 cut(s)	338, 469, 680
SspMI	CTAG	2 cut(s)	609, 702
SstI	GAGCTC	1 cut(s)	186
StyD4I	CCNGG	5 cut(s)	52, 422, 574, 1122, 1147
StyI	CCWWGG	1 cut(s)	386
TaaI	ACNGT	1 cut(s)	333
TaiI	ACGT	2 cut(s)	413, 540
TaqI	TCGA	2 cut(s)	75, 547
TasI	AATT	8 cut(s)	86, 209, 358, 512, 549, 648, 668, 1113
TatI	WGTACW	3 cut(s)	850, 1023, 1164
TfiI	GAWTC	1 cut(s)	635
Tru1I	TTAA	3 cut(s)	285, 344, 749
Tru9I	TTAA	3 cut(s)	285, 344, 749
TscAI	CASTG	2 cut(s)	442, 836
TseFI	GTSAC	2 cut(s)	1143, 1174
TseI	GCWGC	3 cut(s)	140, 155, 296
Tsp45I	GTSAC	2 cut(s)	1143, 1174
TspDTI	ATGAA	5 cut(s)	572, 627, 668, 967, 1226
TspGWI	ACGGA	3 cut(s)	30, 954, 1149
TspRI	CASTG	2 cut(s)	442, 836
VneI	GTGCAC	1 cut(s)	864
VpaK11BI	GGWCC	1 cut(s)	799
XapI	RAATTY	1 cut(s)	209
XceI	RCATGY	4 cut(s)	219, 379, 447, 1235
XspI	CTAG	2 cut(s)	609, 702
ZrmI	AGTACT	1 cut(s)	852

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.