RLG00000024598

Belongs to the UDP-glycosyltransferase family

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
Physical Location & Seq
Reverse (-)
37359432 .. 37360901
1470 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000024598

Sequence Viewer

Length: 1269 bp
ATGGCCTCTCAACAGCAGAAGCTTCACTTTGCTTTGTTTCCGTTTATGGCTCCAGGTCACATGATCCCATTAATCGACATTGCTAAATTGCTTGCACAAGAAGGCATGATCATCACCATATTCACCACACCACACAATGCAGCCCGTTTCAAAGCAGCTCTTGATCGCGCTACAGAATCCGGGCTCCAAATCCGAGTAATCCAGCTGAAATTCCCATGTGAAGAAGTCGGATTACCTCAAGGGTGTGAGAACTTTGACATGGTACATTCACACGACATGACCTTCAACTTCTTTGCTGCAATCGCCATGCTACAACAGGAAGTGGAGAAACTGTTTGCGGAGCTAACTCCGAAGCCAAATTGCATAATCTCGGACATGTCTTTGCCATGGACAATCAACATCTCACGCACAGAAATGTTTGCCGCCGAGTACGATTCATACGGCACAATTATGAATACTTTTGAAGAATTGGAGCAAGAGTATGTGAAAGACTACAAGAAGGCAAGAAATGGTAAGGTGTGGTGTGTTGGCCCTGTTTCACTCTGCAACAAAGATGACTTGGACAAAGCACAAAGGGGTGACAAGGCCTCGGTTGATGAACAACACTGCTTGAACTGGCTTGATTCTTGGCAACCAAGTTCTGTAATTTATGCTTGCCTCGGAACTCTATGTAATGCAGTCACTGAGCAATGGATAGAGCTTGGATTAGGCTTGGAGGCGTCAAAGAAACCTTTCATTTGGGTTTTGAAAGAAGGCATTCGATCGGAAGAGTTGGAAAGGTGGATTGAGGAAACTGGTTTTGAGGAAAGAACCAAGAAGATGAGCCTCTTGATTCGGGGTTGGGCTCCGCAGACACTACTGTTGTCACATCCTGCCATTGGGGGGTTCTTGACACATTGTGGCTGGAATTCAACACTAGAAGGCATATGTGCTGGGCTTCCTATGATCACGTGGCCATTGTTTGCAGACCAATTTCTCAATGAAAAACTAATACAACAGGTTCTAAAGATTGCAGTCAGGGTTGGGGTGGAACATCCAATGAAATGGGGTGAGGAGGAGGAGATTGGGGTGTTGGTGAAGAAGGAAAATGTGAAGGAAGCAATAGACAAGTTGATGGATGGAGACGAAAGCGAAGCGAGAAGAGATCGAGCTAGGCAGCTTGCGAAAATGGCCGTAAGAGCGGTGGAACAAGGCGGATCTTCTCACCGTAACATTGCACTACTAGTCCAAGACCTCATTCAACAAGGAAGTTGCAGAGAGACTTCTTGA

Protein Analysis

423

Amino Acids

47.69

Weight (kDa)

5.31

Isoelectric Point (pI)

45.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 213 - 345 1.2e-20 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 1181
AccII CGCG 1 cut(s) 168
AciI CCGC 5 cut(s) 338, 423, 848, 1181, 1194
AclWI GGATC 2 cut(s) 58, 1204
AcoI YGGCCR 2 cut(s) 953, 1170
AcsI RAATTY 2 cut(s) 209, 907
AcvI CACGTG 1 cut(s) 951
AcyI GRCGYC 1 cut(s) 719
AdeI CACNNNGTG 1 cut(s) 899
AfaI GTAC 2 cut(s) 264, 431
AfiI CCNNNNNNNGG 2 cut(s) 878, 882
AflIII ACRYGT 1 cut(s) 375
AgsI TTSAA 7 cut(s) 151, 286, 464, 613, 748, 912, 1241
AhlI ACTAGT 1 cut(s) 1222
AjnI CCWGG 1 cut(s) 52
AjuI GAANNNNNNNTTGG 2 cut(s) 1221, 1253
AluBI AGCT 7 cut(s) 22, 158, 205, 343, 700, 1151, 1159
AluI AGCT 7 cut(s) 22, 158, 205, 343, 700, 1151, 1159
Alw26I GTCTC 2 cut(s) 1116, 1253
AlwI GGATC 2 cut(s) 58, 1204
AlwNI CAGNNNCTG 1 cut(s) 683
AoxI GGCC 5 cut(s) 3, 529, 585, 953, 1170
ApeKI GCWGC 4 cut(s) 140, 155, 296, 1156
ApoI RAATTY 2 cut(s) 209, 907
AseI ATTAAT 1 cut(s) 71
Asp700I GAANNNNTTC 2 cut(s) 731, 756
AspLEI GCGC 1 cut(s) 170
AspS9I GGNCC 1 cut(s) 530
AsuC2I CCSGG 1 cut(s) 181
AsuHPI GGTGA 6 cut(s) 106, 115, 590, 1061, 1087, 1196
BalI TGGCCA 1 cut(s) 955
BanII GRGCYC 2 cut(s) 186, 847
BarI GAAGNNNNNNTAC 2 cut(s) 216, 248
BbrPI CACGTG 1 cut(s) 951
BbvI GCAGC 4 cut(s) 152, 167, 283, 1168
BccI CCATC 2 cut(s) 1108, 1112
BceAI ACGGC 2 cut(s) 457, 1157
BciT130I CCWGG 1 cut(s) 54
BclI TGATCA 2 cut(s) 108, 945
BcnI CCSGG 1 cut(s) 181
BcoDI GTCTC 2 cut(s) 1116, 1253
BcuI ACTAGT 1 cut(s) 1222
BfaI CTAG 3 cut(s) 917, 1152, 1223
BfmI CTRYAG 1 cut(s) 171
BisI GCNGC 5 cut(s) 141, 156, 297, 423, 1157
BlsI GCNGC 5 cut(s) 142, 157, 298, 424, 1158
Bme1390I CCNGG 2 cut(s) 54, 181
BmgT120I GGNCC 1 cut(s) 530
BmiI GGNNCC 3 cut(s) 51, 185, 846
BmrFI CCNGG 2 cut(s) 54, 181
BpmI CTGGAG 1 cut(s) 36
BpuEI CTTGAG 1 cut(s) 222
BpuMI CCSGG 1 cut(s) 181
BsaAI YACGTR 1 cut(s) 951
BsaHI GRCGYC 1 cut(s) 719
BsaJI CCNNGG 3 cut(s) 386, 588, 658
BsaXI ACNNNNNCTCC 4 cut(s) 317, 347, 464, 494
Bsc4I CCNNNNNNNGG 2 cut(s) 878, 882
Bse1I ACTGG 2 cut(s) 620, 799
Bse3DI GCAATG 3 cut(s) 78, 695, 1212
BseBI CCWGG 1 cut(s) 54
BseDI CCNNGG 3 cut(s) 386, 588, 658
BseGI GGATG 3 cut(s) 868, 1033, 1123
BseLI CCNNNNNNNGG 2 cut(s) 878, 882
BseMI GCAATG 3 cut(s) 78, 695, 1212
BseMII CTCAG 1 cut(s) 675
BseNI ACTGG 2 cut(s) 620, 799
BseRI GAGGAG 3 cut(s) 1067, 1070, 1073
BseXI GCAGC 4 cut(s) 152, 167, 283, 1168
BseYI CCCAGC 1 cut(s) 932
Bsh1236I CGCG 1 cut(s) 168
Bsh1285I CGRYCG 1 cut(s) 764
BshFI GGCC 5 cut(s) 5, 531, 587, 955, 1172
BsiEI CGRYCG 1 cut(s) 764
BsiSI CCGG 1 cut(s) 180
BslI CCNNNNNNNGG 2 cut(s) 878, 882
BsmAI GTCTC 2 cut(s) 1116, 1253
BsmBI CGTCTC 1 cut(s) 1116
BsmI GAATGC 1 cut(s) 756
BsnI GGCC 5 cut(s) 5, 531, 587, 955, 1172
Bsp1286I GDGCHC 2 cut(s) 186, 847
Bsp143I GATC 7 cut(s) 63, 108, 163, 761, 945, 1144, 1196
Bsp19I CCATGG 1 cut(s) 386
BspACI CCGC 5 cut(s) 338, 423, 848, 1181, 1194
BspANI GGCC 5 cut(s) 5, 531, 587, 955, 1172
BspCNI CTCAG 1 cut(s) 676
BspFNI CGCG 1 cut(s) 168
BspLI GGNNCC 3 cut(s) 51, 185, 846
BspPI GGATC 2 cut(s) 58, 1204
BsrBI CCGCTC 1 cut(s) 1181
BsrDI GCAATG 3 cut(s) 78, 695, 1212
BsrI ACTGG 2 cut(s) 620, 799
BssECI CCNNGG 3 cut(s) 386, 588, 658
BssMI GATC 7 cut(s) 63, 108, 163, 761, 945, 1144, 1196
BssNI GRCGYC 1 cut(s) 719
BssT1I CCWWGG 1 cut(s) 386
Bst2UI CCWGG 1 cut(s) 54
Bst4CI ACNGT 3 cut(s) 333, 861, 1208
Bst6I CTCTTC 2 cut(s) 762, 1135
BstACI GRCGYC 1 cut(s) 719
BstBAI YACGTR 1 cut(s) 951
BstC8I GCNNGC 3 cut(s) 93, 655, 1161
BstDEI CTNAG 1 cut(s) 684
BstDSI CCRYGG 1 cut(s) 386
BstF5I GGATG 3 cut(s) 868, 1033, 1123
BstFNI CGCG 1 cut(s) 168
BstHHI GCGC 1 cut(s) 170
BstKTI GATC 7 cut(s) 66, 111, 166, 764, 948, 1147, 1199
BstMAI GTCTC 2 cut(s) 1116, 1253
BstMBI GATC 7 cut(s) 63, 108, 163, 761, 945, 1144, 1196
BstMCI CGRYCG 1 cut(s) 764
BstMWI GCNNNNNNNGC 3 cut(s) 302, 1169, 1178
BstNI CCWGG 1 cut(s) 54
BstNSI RCATGY 1 cut(s) 379
BstSCI CCNGG 2 cut(s) 52, 179
BstSFI CTRYAG 1 cut(s) 171
BstUI CGCG 1 cut(s) 168
BstV1I GCAGC 4 cut(s) 152, 167, 283, 1168
BstX2I RGATCY 1 cut(s) 1196
BstXI CCANNNNNNTGG 1 cut(s) 1044
BstYI RGATCY 1 cut(s) 1196
BsuRI GGCC 5 cut(s) 5, 531, 587, 955, 1172
BtgI CCRYGG 1 cut(s) 386
BtsCI GGATG 3 cut(s) 868, 1033, 1123
BtsI GCAGTG 1 cut(s) 604
BtsIMutI CAGTG 2 cut(s) 604, 681
Cac8I GCNNGC 3 cut(s) 93, 655, 1161
CaiI CAGNNNCTG 1 cut(s) 683
CfoI GCGC 1 cut(s) 170
Cfr13I GGNCC 1 cut(s) 530
CseI GACGC 1 cut(s) 708
Csp6I GTAC 2 cut(s) 263, 430
CviAII CATG 8 cut(s) 61, 106, 216, 259, 277, 307, 376, 387
CviQI GTAC 2 cut(s) 263, 430
DdeI CTNAG 1 cut(s) 684
DpnI GATC 7 cut(s) 65, 110, 165, 763, 947, 1146, 1198
DpnII GATC 7 cut(s) 63, 108, 163, 761, 945, 1144, 1196
DraIII CACNNNGTG 1 cut(s) 899
EaeI YGGCCR 2 cut(s) 953, 1170
Eam1104I CTCTTC 2 cut(s) 762, 1135
EarI CTCTTC 2 cut(s) 762, 1135
EciI GGCGGA 1 cut(s) 1209
Eco130I CCWWGG 1 cut(s) 386
Eco147I AGGCCT 1 cut(s) 587
Eco24I GRGCYC 2 cut(s) 186, 847
Eco72I CACGTG 1 cut(s) 951
EcoRI GAATTC 1 cut(s) 907
EcoRII CCWGG 1 cut(s) 52
EcoT14I CCWWGG 1 cut(s) 386
EcoT38I GRGCYC 2 cut(s) 186, 847
ErhI CCWWGG 1 cut(s) 386
Esp3I CGTCTC 1 cut(s) 1116
FaeI CATG 8 cut(s) 64, 109, 219, 262, 280, 310, 379, 390
FalI AAGNNNNNCTT 4 cut(s) 11, 43, 144, 176
FatI CATG 8 cut(s) 60, 105, 215, 258, 276, 306, 375, 386
FauNDI CATATG 1 cut(s) 926
FbaI TGATCA 2 cut(s) 108, 945
Fnu4HI GCNGC 5 cut(s) 141, 156, 297, 423, 1157
FokI GGATG 3 cut(s) 855, 1020, 1130
FriOI GRGCYC 2 cut(s) 186, 847
Fsp4HI GCNGC 5 cut(s) 141, 156, 297, 423, 1157
FspBI CTAG 3 cut(s) 917, 1152, 1223
GlaI GCGC 1 cut(s) 169
GluI GCNGC 5 cut(s) 141, 156, 297, 423, 1157
GsaI CCCAGC 1 cut(s) 936
GsuI CTGGAG 1 cut(s) 36
HaeIII GGCC 5 cut(s) 5, 531, 587, 955, 1172
HapII CCGG 1 cut(s) 180
HgaI GACGC 1 cut(s) 708
HhaI GCGC 1 cut(s) 170
Hin1I GRCGYC 1 cut(s) 719
Hin1II CATG 8 cut(s) 64, 109, 219, 262, 280, 310, 379, 390
Hin6I GCGC 1 cut(s) 168
HinP1I GCGC 1 cut(s) 168
HindIII AAGCTT 1 cut(s) 20
HinfI GANTC 4 cut(s) 176, 434, 623, 832
HpaII CCGG 1 cut(s) 180
HphI GGTGA 6 cut(s) 106, 115, 590, 1061, 1087, 1196
Hpy188I TCNGA 6 cut(s) 194, 230, 351, 373, 662, 766
Hpy188III TCNNGA 4 cut(s) 161, 829, 889, 1266
HpyAV CCTTC 7 cut(s) 95, 292, 493, 746, 914, 1075, 1087
HpyCH4III ACNGT 3 cut(s) 333, 861, 1208
HpyCH4IV ACGT 1 cut(s) 950
HpyF10VI GCNNNNNNNGC 3 cut(s) 302, 1169, 1178
HpyF3I CTNAG 1 cut(s) 684
HpySE526I ACGT 1 cut(s) 950
Hsp92I GRCGYC 1 cut(s) 719
Hsp92II CATG 8 cut(s) 64, 109, 219, 262, 280, 310, 379, 390
HspAI GCGC 1 cut(s) 168
Ksp22I TGATCA 2 cut(s) 108, 945
Kzo9I GATC 7 cut(s) 63, 108, 163, 761, 945, 1144, 1196
LmnI GCTCC 5 cut(s) 55, 189, 340, 472, 850
Lsp1109I GCAGC 4 cut(s) 152, 167, 283, 1168
MaeI CTAG 3 cut(s) 917, 1152, 1223
MaeII ACGT 1 cut(s) 950
MaeIII GTNAC 5 cut(s) 56, 578, 679, 864, 1208
MalI GATC 7 cut(s) 65, 110, 165, 763, 947, 1146, 1198
MbiI CCGCTC 1 cut(s) 1181
MboI GATC 7 cut(s) 63, 108, 163, 761, 945, 1144, 1196
MboII GAAGA 7 cut(s) 233, 476, 779, 829, 1090, 1152, 1191
MflI RGATCY 1 cut(s) 1196
MhlI GDGCHC 2 cut(s) 186, 847
MlsI TGGCCA 1 cut(s) 955
MluCI AATT 8 cut(s) 86, 209, 358, 447, 467, 645, 907, 971
MluNI TGGCCA 1 cut(s) 955
MmeI TCCRAC 2 cut(s) 208, 753
Mox20I TGGCCA 1 cut(s) 955
MroXI GAANNNNTTC 2 cut(s) 731, 756
MscI TGGCCA 1 cut(s) 955
MseI TTAA 1 cut(s) 71
MslI CAYNNNNRTG 2 cut(s) 413, 449
Msp20I TGGCCA 1 cut(s) 955
MspA1I CMGCKG 1 cut(s) 205
MspI CCGG 1 cut(s) 180
MspR9I CCNGG 2 cut(s) 54, 181
Mva1269I GAATGC 1 cut(s) 756
MvaI CCWGG 1 cut(s) 54
MvnI CGCG 1 cut(s) 168
MwoI GCNNNNNNNGC 3 cut(s) 302, 1169, 1178
NciI CCSGG 1 cut(s) 181
NcoI CCATGG 1 cut(s) 386
NdeI CATATG 1 cut(s) 926
NdeII GATC 7 cut(s) 63, 108, 163, 761, 945, 1144, 1196
NlaIII CATG 8 cut(s) 64, 109, 219, 262, 280, 310, 379, 390
NlaIV GGNNCC 3 cut(s) 51, 185, 846
NmeAIII GCCGAG 1 cut(s) 451
NmuCI GTSAC 4 cut(s) 56, 578, 679, 864
NspI RCATGY 1 cut(s) 379
PceI AGGCCT 1 cut(s) 587
PciI ACATGT 1 cut(s) 375
PctI GAATGC 1 cut(s) 756
PdmI GAANNNNTTC 2 cut(s) 731, 756
PfeI GAWTC 4 cut(s) 176, 434, 623, 832
PkrI GCNGC 5 cut(s) 142, 157, 298, 424, 1158
Ple19I CGATCG 1 cut(s) 764
PmaCI CACGTG 1 cut(s) 951
PmlI CACGTG 1 cut(s) 951
Ppu21I YACGTR 1 cut(s) 951
PscI ACATGT 1 cut(s) 375
PshBI ATTAAT 1 cut(s) 71
Psp6I CCWGG 1 cut(s) 52
PspCI CACGTG 1 cut(s) 951
PspFI CCCAGC 1 cut(s) 932
PspGI CCWGG 1 cut(s) 52
PspN4I GGNNCC 3 cut(s) 51, 185, 846
PspPI GGNCC 1 cut(s) 530
PstNI CAGNNNCTG 1 cut(s) 683
PsuI RGATCY 1 cut(s) 1196
PvuI CGATCG 1 cut(s) 764
PvuII CAGCTG 1 cut(s) 205
RsaI GTAC 2 cut(s) 264, 431
RsaNI GTAC 2 cut(s) 263, 430
RseI CAYNNNNRTG 2 cut(s) 413, 449
SaqAI TTAA 1 cut(s) 71
SatI GCNGC 5 cut(s) 141, 156, 297, 423, 1157
Sau3AI GATC 7 cut(s) 63, 108, 163, 761, 945, 1144, 1196
Sau96I GGNCC 1 cut(s) 530
ScrFI CCNGG 2 cut(s) 54, 181
SduI GDGCHC 2 cut(s) 186, 847
SfcI CTRYAG 1 cut(s) 171
SmiMI CAYNNNNRTG 2 cut(s) 413, 449
SmlI CTYRAG 1 cut(s) 237
SmoI CTYRAG 1 cut(s) 237
SpeI ACTAGT 1 cut(s) 1222
Sse9I AATT 8 cut(s) 86, 209, 358, 447, 467, 645, 907, 971
SseBI AGGCCT 1 cut(s) 587
SsiI CCGC 5 cut(s) 338, 423, 848, 1181, 1194
SspMI CTAG 3 cut(s) 917, 1152, 1223
StuI AGGCCT 1 cut(s) 587
StyD4I CCNGG 2 cut(s) 52, 179
StyI CCWWGG 1 cut(s) 386
TaaI ACNGT 3 cut(s) 333, 861, 1208
TaiI ACGT 1 cut(s) 953
TaqI TCGA 3 cut(s) 75, 760, 1147
TasI AATT 8 cut(s) 86, 209, 358, 447, 467, 645, 907, 971
TauI GCSGC 1 cut(s) 425
TfiI GAWTC 4 cut(s) 176, 434, 623, 832
Tru1I TTAA 1 cut(s) 71
Tru9I TTAA 1 cut(s) 71
TscAI CASTG 2 cut(s) 611, 688
TseFI GTSAC 4 cut(s) 56, 578, 679, 864
TseI GCWGC 4 cut(s) 140, 155, 296, 1156
Tsp45I GTSAC 4 cut(s) 56, 578, 679, 864
TspDTI ATGAA 6 cut(s) 426, 467, 612, 724, 996, 1055
TspGWI ACGGA 1 cut(s) 30
TspRI CASTG 2 cut(s) 611, 688
VspI ATTAAT 1 cut(s) 71
XapI RAATTY 2 cut(s) 209, 907
XceI RCATGY 1 cut(s) 379
XmnI GAANNNNTTC 2 cut(s) 731, 756
XspI CTAG 3 cut(s) 917, 1152, 1223
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.