Rorug03G0079900

Belongs to the UDP-glycosyltransferase family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
Physical Location & Seq
Forward (+)
6231435 .. 6232746
1312 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0079900.1

Sequence Viewer

Length: 1017 bp
ATGGCTCCTCGTATCACCACTGCTGCCACCACCGTCTCCACCGTCAAGTCTTCAACTGCCCGTAGCCGCGCCTATGTGACGTTCTTGGCTGGAAACGGTGACTATGTGAAAGGTGTGGTTGGGCTGGCCAAGGGTTTAAGGAAGGTCAAGAGCAAGTACCCACTAGTTGTGGCTATCTTGCCCGACGTGCCTGAAGAACACCGTCAGATCCTAGTTTCTCAGGGCTGCATAGTCCGAGTGATCGAGCCTGTTCACCCTCCTGAGAACCAGACCCAATATGCCATGGCCTACTACGTCATCAACTACTCCAAGCTTCGTATTTGGGAGTTTGTGGAGTATAGTAAGATGATCTACTTGGATGGAGATATCCAAGTGTTTGAGAACATTGACCACCTGTTCGACTATCCAGACAACTACTTCTATGCTGTCAAGGATTGCTTCTGTGAGCCCAACTGGAGGGACAGTCCCCAGTTCAAGATTGGGTACTGCCAGCAGTGCCCAGACAGGGTACAGTGGGACAGTAGCTTGGGTCCCAAGCCACCTCTGTATTTTAATGCAGGCATGTTTGTCTATCAGCCTTGCTTGTCTACTTACCAGGAACTCCTCAGTACCCTCAAGACTAGCACTCCTACTTTATTTGCTGAGCAGGATTTCTTGAACAATTTCTTCAGGGATAAGTACAAGCCTATCCCTTCAGATTACAACCTTGTTTTGGCCATGCTTTGGCGCCACCCTGAAAACATCCAATTGGACAAGGTCAAGGTTGTCCACTATTGTGCTAATGGCTCCAAGCCATGGAGGTACAATGGAGAAGGGGAAAACATGGAGAGGGAAGATATTAAGATGCTGGTGAAGAGGTGGTGGGATATCTATAACGATGAGTCATTGGATTACAACAACACTGTGGCTCCTCGGGCTAGAAATGGAACTCGGCAAGTGAACCTGCAGCCCTTCCAGACGGTGCTGTTAACGGAGACTGGTGATCTTGATTATATTAGCGCCCCATCCGCTGCTTAG

Protein Analysis

338

Amino Acids

39.01

Weight (kDa)

6.24

Isoelectric Point (pI)

39.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_8 PF01501 27 - 269 3.5e-44 Glycosyl transferase family 8
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 951
AccB1I GGYRCC 1 cut(s) 726
AccB7I CCANNNNNTGG 2 cut(s) 723, 795
AccI GTMKAC 1 cut(s) 587
AccII CGCG 1 cut(s) 69
AciI CCGC 2 cut(s) 67, 1008
AclWI GGATC 1 cut(s) 202
AcoI YGGCCR 2 cut(s) 126, 714
AcuI CTGAAG 3 cut(s) 213, 652, 678
AcyI GRCGYC 1 cut(s) 727
AfaI GTAC 6 cut(s) 158, 485, 510, 610, 680, 803
AfiI CCNNNNNNNGG 5 cut(s) 456, 505, 712, 723, 795
AgsI TTSAA 3 cut(s) 54, 475, 658
AhlI ACTAGT 1 cut(s) 163
AjiI CACGTC 1 cut(s) 187
AjnI CCWGG 1 cut(s) 594
AleI CACNNNNGTG 1 cut(s) 774
AluBI AGCT 2 cut(s) 313, 525
AluI AGCT 2 cut(s) 313, 525
Alw26I GTCTC 2 cut(s) 40, 968
AlwI GGATC 1 cut(s) 202
Ama87I CYCGRG 1 cut(s) 912
AoxI GGCC 3 cut(s) 126, 285, 714
ApeKI GCWGC 4 cut(s) 23, 225, 946, 1010
ArsI GACNNNNNNTTYG 2 cut(s) 380, 412
Asp700I GAANNNNTTC 1 cut(s) 662
AspLEI GCGC 3 cut(s) 71, 729, 1001
AspS9I GGNCC 1 cut(s) 530
AsuHPI GGTGA 5 cut(s) 7, 110, 245, 862, 992
AvaI CYCGRG 1 cut(s) 912
AvaII GGWCC 1 cut(s) 530
BaeGI GKGCMC 1 cut(s) 500
BalI TGGCCA 2 cut(s) 128, 716
BanI GGYRCC 1 cut(s) 726
BanII GRGCYC 1 cut(s) 450
BbsI GAAGAC 1 cut(s) 42
BbvI GCAGC 4 cut(s) 10, 212, 958, 997
BccI CCATC 2 cut(s) 353, 1012
BciT130I CCWGG 1 cut(s) 596
BcoDI GTCTC 2 cut(s) 40, 968
BcuI ACTAGT 1 cut(s) 163
BfaI CTAG 4 cut(s) 164, 212, 621, 918
BfmI CTRYAG 1 cut(s) 944
BfoI RGCGCY 2 cut(s) 730, 1002
BfuAI ACCTGC 1 cut(s) 951
BisI GCNGC 5 cut(s) 24, 67, 226, 947, 1011
BlpI GCTNAGC 1 cut(s) 642
BlsI GCNGC 5 cut(s) 25, 68, 227, 948, 1012
Bme1390I CCNGG 1 cut(s) 596
Bme18I GGWCC 1 cut(s) 530
BmeT110I CYCGRG 1 cut(s) 912
BmgBI CACGTC 1 cut(s) 187
BmgT120I GGNCC 1 cut(s) 530
BmiI GGNNCC 6 cut(s) 6, 531, 532, 728, 787, 909
BmrFI CCNGG 1 cut(s) 596
BmrI ACTGGG 1 cut(s) 463
BmsI GCATC 1 cut(s) 834
BmuI ACTGGG 1 cut(s) 463
BpiI GAAGAC 1 cut(s) 42
BpmI CTGGAG 1 cut(s) 475
Bpu1102I GCTNAGC 1 cut(s) 642
BpuEI CTTGAG 1 cut(s) 599
BsaHI GRCGYC 1 cut(s) 727
BsaJI CCNNGG 4 cut(s) 129, 282, 794, 911
BsaXI ACNNNNNCTCC 6 cut(s) 448, 478, 610, 640, 892, 922
Bsc4I CCNNNNNNNGG 5 cut(s) 456, 505, 712, 723, 795
Bse1I ACTGG 3 cut(s) 458, 469, 982
BseBI CCWGG 1 cut(s) 596
BseDI CCNNGG 4 cut(s) 129, 282, 794, 911
BseGI GGATG 3 cut(s) 364, 741, 1004
BseLI CCNNNNNNNGG 5 cut(s) 456, 505, 712, 723, 795
BseMII CTCAG 4 cut(s) 233, 252, 619, 633
BseNI ACTGG 3 cut(s) 458, 469, 982
BseRI GAGGAG 2 cut(s) 593, 900
BseSI GKGCMC 1 cut(s) 500
BseXI GCAGC 4 cut(s) 10, 212, 958, 997
Bsh1236I CGCG 1 cut(s) 69
BshFI GGCC 3 cut(s) 128, 287, 716
BshNI GGYRCC 1 cut(s) 726
BsiHKCI CYCGRG 1 cut(s) 912
BslFI GGGAC 4 cut(s) 450, 473, 516, 530
BslI CCNNNNNNNGG 5 cut(s) 456, 505, 712, 723, 795
BsmAI GTCTC 2 cut(s) 40, 968
BsmBI CGTCTC 1 cut(s) 40
BsmFI GGGAC 4 cut(s) 450, 473, 516, 530
BsnI GGCC 3 cut(s) 128, 287, 716
BsoBI CYCGRG 1 cut(s) 912
Bsp1286I GDGCHC 2 cut(s) 450, 500
Bsp143I GATC 4 cut(s) 207, 240, 348, 982
Bsp1720I GCTNAGC 1 cut(s) 642
Bsp19I CCATGG 2 cut(s) 282, 794
BspACI CCGC 2 cut(s) 67, 1008
BspANI GGCC 3 cut(s) 128, 287, 716
BspCNI CTCAG 4 cut(s) 232, 253, 618, 634
BspFNI CGCG 1 cut(s) 69
BspLI GGNNCC 6 cut(s) 6, 531, 532, 728, 787, 909
BspMAI CTGCAG 1 cut(s) 948
BspMI ACCTGC 1 cut(s) 951
BspPI GGATC 1 cut(s) 202
BspT107I GGYRCC 1 cut(s) 726
BsrI ACTGG 3 cut(s) 458, 469, 982
BssECI CCNNGG 4 cut(s) 129, 282, 794, 911
BssMI GATC 4 cut(s) 207, 240, 348, 982
BssNI GRCGYC 1 cut(s) 727
BssT1I CCWWGG 3 cut(s) 129, 282, 794
Bst2UI CCWGG 1 cut(s) 596
Bst4CI ACNGT 9 cut(s) 34, 43, 98, 203, 464, 513, 521, 904, 961
Bst6I CTCTTC 1 cut(s) 848
BstACI GRCGYC 1 cut(s) 727
BstC8I GCNNGC 3 cut(s) 126, 491, 559
BstDEI CTNAG 5 cut(s) 219, 261, 605, 642, 1014
BstDSI CCRYGG 2 cut(s) 282, 794
BstF5I GGATG 3 cut(s) 364, 741, 1004
BstFNI CGCG 1 cut(s) 69
BstH2I RGCGCY 2 cut(s) 730, 1002
BstHHI GCGC 3 cut(s) 71, 729, 1001
BstKTI GATC 4 cut(s) 210, 243, 351, 985
BstMAI GTCTC 2 cut(s) 40, 968
BstMBI GATC 4 cut(s) 207, 240, 348, 982
BstMWI GCNNNNNNNGC 4 cut(s) 187, 495, 914, 1007
BstNI CCWGG 1 cut(s) 596
BstNSI RCATGY 1 cut(s) 565
BstSCI CCNGG 1 cut(s) 594
BstSFI CTRYAG 1 cut(s) 944
BstSLI GKGCMC 1 cut(s) 500
BstUI CGCG 1 cut(s) 69
BstV1I GCAGC 4 cut(s) 10, 212, 958, 997
BstV2I GAAGAC 1 cut(s) 42
BstX2I RGATCY 1 cut(s) 207
BstYI RGATCY 1 cut(s) 207
BsuRI GGCC 3 cut(s) 128, 287, 716
BtgI CCRYGG 2 cut(s) 282, 794
BtrI CACGTC 1 cut(s) 187
BtsCI GGATG 3 cut(s) 364, 741, 1004
BtsI GCAGTG 2 cut(s) 18, 500
BtsIMutI CAGTG 4 cut(s) 18, 500, 518, 900
BveI ACCTGC 1 cut(s) 951
Cac8I GCNNGC 3 cut(s) 126, 491, 559
CfoI GCGC 3 cut(s) 71, 729, 1001
Cfr13I GGNCC 1 cut(s) 530
Csp6I GTAC 6 cut(s) 157, 484, 509, 609, 679, 802
CviAII CATG 5 cut(s) 283, 562, 718, 795, 823
CviQI GTAC 6 cut(s) 157, 484, 509, 609, 679, 802
DdeI CTNAG 5 cut(s) 219, 261, 605, 642, 1014
DinI GGCGCC 1 cut(s) 728
DpnI GATC 4 cut(s) 209, 242, 350, 984
DpnII GATC 4 cut(s) 207, 240, 348, 982
EaeI YGGCCR 2 cut(s) 126, 714
Eam1104I CTCTTC 1 cut(s) 848
EarI CTCTTC 1 cut(s) 848
Eco130I CCWWGG 3 cut(s) 129, 282, 794
Eco24I GRGCYC 1 cut(s) 450
Eco32I GATATC 2 cut(s) 367, 868
Eco47I GGWCC 1 cut(s) 530
Eco57I CTGAAG 3 cut(s) 213, 652, 678
Eco88I CYCGRG 1 cut(s) 912
EcoO109I RGGNCCY 1 cut(s) 530
EcoRII CCWGG 1 cut(s) 594
EcoRV GATATC 2 cut(s) 367, 868
EcoT14I CCWWGG 3 cut(s) 129, 282, 794
EcoT38I GRGCYC 1 cut(s) 450
EgeI GGCGCC 1 cut(s) 728
EheI GGCGCC 1 cut(s) 728
ErhI CCWWGG 3 cut(s) 129, 282, 794
Esp3I CGTCTC 1 cut(s) 40
FaeI CATG 5 cut(s) 286, 565, 721, 798, 826
FalI AAGNNNNNCTT 2 cut(s) 422, 454
FaqI GGGAC 4 cut(s) 450, 473, 516, 530
FatI CATG 5 cut(s) 282, 561, 717, 794, 822
FblI GTMKAC 1 cut(s) 587
Fnu4HI GCNGC 5 cut(s) 24, 67, 226, 947, 1011
FokI GGATG 3 cut(s) 371, 728, 991
FriOI GRGCYC 1 cut(s) 450
Fsp4HI GCNGC 5 cut(s) 24, 67, 226, 947, 1011
FspBI CTAG 4 cut(s) 164, 212, 621, 918
GlaI GCGC 3 cut(s) 70, 728, 1000
GluI GCNGC 5 cut(s) 24, 67, 226, 947, 1011
GsuI CTGGAG 1 cut(s) 475
HaeII RGCGCY 2 cut(s) 730, 1002
HaeIII GGCC 3 cut(s) 128, 287, 716
HhaI GCGC 3 cut(s) 71, 729, 1001
Hin1I GRCGYC 1 cut(s) 727
Hin1II CATG 5 cut(s) 286, 565, 721, 798, 826
Hin6I GCGC 3 cut(s) 69, 727, 999
HinP1I GCGC 3 cut(s) 69, 727, 999
HincII GTYRAC 1 cut(s) 969
HindII GTYRAC 1 cut(s) 969
HindIII AAGCTT 1 cut(s) 311
HinfI GANTC 1 cut(s) 881
HpaI GTTAAC 1 cut(s) 969
HphI GGTGA 5 cut(s) 7, 110, 245, 862, 992
Hpy166II GTNNAC 5 cut(s) 253, 588, 769, 940, 969
Hpy188I TCNGA 3 cut(s) 207, 236, 697
Hpy188III TCNNGA 8 cut(s) 148, 260, 407, 475, 616, 655, 955, 986
Hpy8I GTNNAC 5 cut(s) 253, 588, 769, 940, 969
Hpy99I CGWCG 1 cut(s) 188
HpyAV CCTTC 4 cut(s) 136, 702, 806, 961
HpyCH4III ACNGT 9 cut(s) 34, 43, 98, 203, 464, 513, 521, 904, 961
HpyCH4IV ACGT 3 cut(s) 80, 186, 294
HpyCH4V TGCA 3 cut(s) 228, 557, 946
HpyF10VI GCNNNNNNNGC 4 cut(s) 187, 495, 914, 1007
HpyF3I CTNAG 5 cut(s) 219, 261, 605, 642, 1014
HpySE526I ACGT 3 cut(s) 80, 186, 294
Hsp92I GRCGYC 1 cut(s) 727
Hsp92II CATG 5 cut(s) 286, 565, 721, 798, 826
HspAI GCGC 3 cut(s) 69, 727, 999
KasI GGCGCC 1 cut(s) 726
KflI GGGWCCC 1 cut(s) 530
KspAI GTTAAC 1 cut(s) 969
Kzo9I GATC 4 cut(s) 207, 240, 348, 982
LmnI GCTCC 3 cut(s) 10, 791, 913
Lsp1109I GCAGC 4 cut(s) 10, 212, 958, 997
LweI GCATC 1 cut(s) 834
MaeI CTAG 4 cut(s) 164, 212, 621, 918
MaeII ACGT 3 cut(s) 80, 186, 294
MaeIII GTNAC 2 cut(s) 76, 98
MalI GATC 4 cut(s) 209, 242, 350, 984
MboI GATC 4 cut(s) 207, 240, 348, 982
MboII GAAGA 5 cut(s) 42, 206, 658, 845, 865
MfeI CAATTG 1 cut(s) 746
MflI RGATCY 1 cut(s) 207
MhlI GDGCHC 2 cut(s) 450, 500
MlsI TGGCCA 2 cut(s) 128, 716
MluCI AATT 2 cut(s) 661, 746
MluNI TGGCCA 2 cut(s) 128, 716
Mly113I GGCGCC 1 cut(s) 727
MlyI GAGTC 1 cut(s) 890
Mox20I TGGCCA 2 cut(s) 128, 716
MroXI GAANNNNTTC 1 cut(s) 662
MscI TGGCCA 2 cut(s) 128, 716
MseI TTAA 4 cut(s) 137, 552, 840, 968
MslI CAYNNNNRTG 1 cut(s) 774
Msp20I TGGCCA 2 cut(s) 128, 716
MspA1I CMGCKG 1 cut(s) 1010
MspR9I CCNGG 1 cut(s) 596
MunI CAATTG 1 cut(s) 746
MvaI CCWGG 1 cut(s) 596
MvnI CGCG 1 cut(s) 69
MwoI GCNNNNNNNGC 4 cut(s) 187, 495, 914, 1007
NarI GGCGCC 1 cut(s) 727
NcoI CCATGG 2 cut(s) 282, 794
NdeII GATC 4 cut(s) 207, 240, 348, 982
NlaIII CATG 5 cut(s) 286, 565, 721, 798, 826
NlaIV GGNNCC 6 cut(s) 6, 531, 532, 728, 787, 909
NmeAIII GCCGAG 1 cut(s) 910
NmuCI GTSAC 2 cut(s) 76, 98
NspI RCATGY 1 cut(s) 565
OliI CACNNNNGTG 1 cut(s) 774
PdmI GAANNNNTTC 1 cut(s) 662
PflFI GACNNNGTC 1 cut(s) 755
PflMI CCANNNNNTGG 2 cut(s) 723, 795
PkrI GCNGC 5 cut(s) 25, 68, 227, 948, 1012
PleI GAGTC 1 cut(s) 889
PluTI GGCGCC 1 cut(s) 730
PpsI GAGTC 1 cut(s) 889
PpuMI RGGWCCY 1 cut(s) 530
Psp5II RGGWCCY 1 cut(s) 530
Psp6I CCWGG 1 cut(s) 594
PspGI CCWGG 1 cut(s) 594
PspN4I GGNNCC 6 cut(s) 6, 531, 532, 728, 787, 909
PspPI GGNCC 1 cut(s) 530
PspPPI RGGWCCY 1 cut(s) 530
PstI CTGCAG 1 cut(s) 948
PsuI RGATCY 1 cut(s) 207
PsyI GACNNNGTC 1 cut(s) 755
RsaI GTAC 6 cut(s) 158, 485, 510, 610, 680, 803
RsaNI GTAC 6 cut(s) 157, 484, 509, 609, 679, 802
RseI CAYNNNNRTG 1 cut(s) 774
SaqAI TTAA 4 cut(s) 137, 552, 840, 968
SatI GCNGC 5 cut(s) 24, 67, 226, 947, 1011
Sau3AI GATC 4 cut(s) 207, 240, 348, 982
Sau96I GGNCC 1 cut(s) 530
SchI GAGTC 1 cut(s) 890
ScrFI CCNGG 1 cut(s) 596
SduI GDGCHC 2 cut(s) 450, 500
SfaNI GCATC 1 cut(s) 834
SfcI CTRYAG 1 cut(s) 944
SfoI GGCGCC 1 cut(s) 728
SinI GGWCC 1 cut(s) 530
SmiMI CAYNNNNRTG 1 cut(s) 774
SmlI CTYRAG 1 cut(s) 614
SmoI CTYRAG 1 cut(s) 614
SpeI ACTAGT 1 cut(s) 163
Sse9I AATT 2 cut(s) 661, 746
SsiI CCGC 2 cut(s) 67, 1008
SspDI GGCGCC 1 cut(s) 726
SspMI CTAG 4 cut(s) 164, 212, 621, 918
StyD4I CCNGG 1 cut(s) 594
StyI CCWWGG 3 cut(s) 129, 282, 794
TaaI ACNGT 9 cut(s) 34, 43, 98, 203, 464, 513, 521, 904, 961
TaiI ACGT 3 cut(s) 83, 189, 297
TaqI TCGA 2 cut(s) 243, 399
TasI AATT 2 cut(s) 661, 746
TatI WGTACW 1 cut(s) 678
TauI GCSGC 1 cut(s) 69
Tru1I TTAA 4 cut(s) 137, 552, 840, 968
Tru9I TTAA 4 cut(s) 137, 552, 840, 968
TscAI CASTG 4 cut(s) 25, 500, 518, 907
TseFI GTSAC 2 cut(s) 76, 98
TseI GCWGC 4 cut(s) 23, 225, 946, 1010
Tsp45I GTSAC 2 cut(s) 76, 98
TspGWI ACGGA 1 cut(s) 986
TspRI CASTG 4 cut(s) 25, 500, 518, 907
Tth111I GACNNNGTC 1 cut(s) 755
Van91I CCANNNNNTGG 2 cut(s) 723, 795
VpaK11BI GGWCC 1 cut(s) 530
XceI RCATGY 1 cut(s) 565
XcmI CCANNNNNNNNNTGG 1 cut(s) 476
XmiI GTMKAC 1 cut(s) 587
XmnI GAANNNNTTC 1 cut(s) 662
XspI CTAG 4 cut(s) 164, 212, 621, 918
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.