Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0001852

Physical Location & Seq

Genomic Coordinates Reverse (-)

33102626 .. 33104023

Gene Structure 1398 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000024209

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGGCCCAAGGCCACATGATTCCAATGGTTGATATGGCTAGAATGTTGGCACTGCGAGGTGTTACCATAACCATTTTCACCACACCATGCAACGCCGCCCGTTTCAAATTAGTCCTTGATCGTGCCATCAAAGCCGGGCTTCAAATTCGAGTAATCGAACTGAAGTTATTTCCATGTCAAGAGGCAGGACTACCCGAGGGGTGTGAGAACTTTGACTTGCTACCTTCACCCCACTTAGCCTTCAATTTCTCCAATGCAACAGCTATGCAACAAGAGCAAGAGTATGTGCTGGAGTTCCCATGGCCACTATTTGGTGACCAATTTTTTGCTGAGCAACTTCTTGTGACAGTTCTGAAAATTGCTGTAAGAATTGGGGTGCCAAAACCACTGAATTGGGGAGAGGAAGAAAAGACTGGGATATTGGTGTACGGGGAAAATGTGAAGGGAGCCATAGAAATATTAATGGATGAAGGAAAACTAAGCCAAGAGAGAAGAGAAAGAGTTGGGGAGCTTGCAATTATGGGAAAGAGAGCTGTACAAGAAGGGGGCTCATCTTATGTCAACATTACAAATCTAATCCAACATTTCATGCAATTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0006629 GO:0008150 GO:0008152 GO:0008194 GO:0008202 GO:0009058 GO:0009314 GO:0009411 GO:0009416 GO:0009605 GO:0009607 GO:0009628 GO:0009636 GO:0009812 GO:0009813 GO:0010224 GO:0010817 GO:0016128 GO:0016131 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0042221 GO:0042440 GO:0042445 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044464 GO:0046148 GO:0046527 GO:0050403 GO:0050502 GO:0050896 GO:0051552 GO:0051553 GO:0051554 GO:0051555 GO:0051704 GO:0051707 GO:0065007 GO:0065008 GO:0071704 GO:0080043 GO:0080044 GO:0080046 GO:0098754 GO:1901360 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko01110 map01110

Pfam Domains

Protein Families

UDPGT

Protein Analysis

200

Amino Acids

22.31

Weight (kDa)

5.48

Isoelectric Point (pI)

32.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001852)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36750 AT2G36760 AT2G36770 AT2G36780 AT2G36790 AT2G36800 AT3G53160
fragaria_vesca	FvH4_6g13320 FvH4_6g17020 FvH4_6g17030 FvH4_6g17063
malus_domestica	MD12G1104300.v1.1 MD12G1104800.v1.1
prunus_persica	Prupe.7G124200_v2.0.a1 Prupe.7G124300_v2.0.a1 Prupe.7G124400_v2.0.a1 Prupe.7G124500_v2.0.a1 Prupe.7G124600_v2.0.a1
pyrus_communis	pycom12g10290 pycom12g10300
rosa_chinensis	RchiOBHm_Chr3g0466191 RchiOBHm_Chr3g0471011 RchiOBHm_Chr3g0471051 RchiOBHm_Chr3g0471071 RchiOBHm_Chr3g0471081
rosa_laevigata	RLG00000024207 RLG00000024208 RLG00000024209 RLG00000024598
rosa_multiflora	Rmu_sc0000350.1_g000005 Rmu_sc0000839.1_g000004 Rmu_sc0000839.1_g000005 Rmu_sc0000839.1_g000006 Rmu_sc0016760.1_g000001
rosa_roxburghii	Rroxscaffold_6G00410310
rosa_rugosa	Rorug03G0079900 Rorug03G0114900 Rorug03G0115000 Rorug03G0115100 Rorug03G0115200
rosa_samantha	Rh6DG066500
rosa_wichuraiana	Rw3G011920 Rw3G015460 Rw3G015470 Rw3G015480 Rw3G015490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	376
AccB7I	CCANNNNNTGG	1 cut(s)	311
AciI	CCGC	1 cut(s)	96
AcoI	YGGCCR	1 cut(s)	302
AcsI	RAATTY	1 cut(s)	144
AcuI	CTGAAG	1 cut(s)	182
AfaI	GTAC	2 cut(s)	428, 537
AfiI	CCNNNNNNNGG	1 cut(s)	311
AgsI	TTSAA	3 cut(s)	106, 143, 244
AluBI	AGCT	3 cut(s)	263, 511, 533
AluI	AGCT	3 cut(s)	263, 511, 533
Ama87I	CYCGRG	1 cut(s)	194
AoxI	GGCC	3 cut(s)	3, 10, 302
ApoI	RAATTY	1 cut(s)	144
ArsI	GACNNNNNNTTYG	2 cut(s)	308, 340
AseI	ATTAAT	1 cut(s)	461
AspS9I	GGNCC	1 cut(s)	4
AsuC2I	CCSGG	1 cut(s)	136
AsuHPI	GGTGA	3 cut(s)	70, 219, 326
AvaI	CYCGRG	1 cut(s)	194
BalI	TGGCCA	1 cut(s)	304
BanI	GGYRCC	1 cut(s)	376
BanII	GRGCYC	1 cut(s)	551
BccI	CCATC	1 cut(s)	134
BcnI	CCSGG	1 cut(s)	136
BfaI	CTAG	1 cut(s)	39
BisI	GCNGC	1 cut(s)	96
BlpI	GCTNAGC	1 cut(s)	330
BlsI	GCNGC	1 cut(s)	97
Bme1390I	CCNGG	1 cut(s)	136
BmeT110I	CYCGRG	1 cut(s)	194
BmgT120I	GGNCC	1 cut(s)	4
BmiI	GGNNCC	2 cut(s)	378, 448
BmrFI	CCNGG	1 cut(s)	136
BmrI	ACTGGG	1 cut(s)	423
BmuI	ACTGGG	1 cut(s)	423
BpmI	CTGGAG	1 cut(s)	311
Bpu1102I	GCTNAGC	1 cut(s)	330
BpuMI	CCSGG	1 cut(s)	136
BsaJI	CCNNGG	3 cut(s)	7, 195, 299
Bsc4I	CCNNNNNNNGG	1 cut(s)	311
Bse1I	ACTGG	1 cut(s)	418
BseDI	CCNNGG	3 cut(s)	7, 195, 299
BseGI	GGATG	1 cut(s)	472
BseLI	CCNNNNNNNGG	1 cut(s)	311
BseMII	CTCAG	1 cut(s)	321
BseNI	ACTGG	1 cut(s)	418
BshFI	GGCC	3 cut(s)	5, 12, 304
BshNI	GGYRCC	1 cut(s)	376
BsiHKCI	CYCGRG	1 cut(s)	194
BsiSI	CCGG	1 cut(s)	135
BslI	CCNNNNNNNGG	1 cut(s)	311
BsnI	GGCC	3 cut(s)	5, 12, 304
BsoBI	CYCGRG	1 cut(s)	194
Bsp1286I	GDGCHC	1 cut(s)	551
Bsp1407I	TGTACA	1 cut(s)	535
Bsp143I	GATC	1 cut(s)	118
Bsp1720I	GCTNAGC	1 cut(s)	330
Bsp19I	CCATGG	1 cut(s)	299
BspACI	CCGC	1 cut(s)	96
BspANI	GGCC	3 cut(s)	5, 12, 304
BspCNI	CTCAG	1 cut(s)	322
BspLI	GGNNCC	2 cut(s)	378, 448
BspT107I	GGYRCC	1 cut(s)	376
BsrGI	TGTACA	1 cut(s)	535
BsrI	ACTGG	1 cut(s)	418
BssECI	CCNNGG	3 cut(s)	7, 195, 299
BssMI	GATC	1 cut(s)	118
BssT1I	CCWWGG	2 cut(s)	7, 299
Bst4CI	ACNGT	1 cut(s)	349
Bst6I	CTCTTC	1 cut(s)	487
BstAUI	TGTACA	1 cut(s)	535
BstC8I	GCNNGC	1 cut(s)	513
BstDEI	CTNAG	3 cut(s)	235, 330, 479
BstDSI	CCRYGG	1 cut(s)	299
BstEII	GGTNACC	1 cut(s)	314
BstF5I	GGATG	1 cut(s)	472
BstKTI	GATC	1 cut(s)	121
BstMBI	GATC	1 cut(s)	118
BstMWI	GCNNNNNNNGC	2 cut(s)	131, 274
BstPI	GGTNACC	1 cut(s)	314
BstSCI	CCNGG	1 cut(s)	134
BstXI	CCANNNNNNTGG	1 cut(s)	393
BsuRI	GGCC	3 cut(s)	5, 12, 304
BtgI	CCRYGG	1 cut(s)	299
BtsCI	GGATG	1 cut(s)	472
BtsI	GCAGTG	1 cut(s)	50
BtsIMutI	CAGTG	2 cut(s)	50, 386
Cac8I	GCNNGC	1 cut(s)	513
Cfr13I	GGNCC	1 cut(s)	4
Csp6I	GTAC	2 cut(s)	427, 536
CviAII	CATG	5 cut(s)	16, 87, 174, 300, 589
CviQI	GTAC	2 cut(s)	427, 536
DdeI	CTNAG	3 cut(s)	235, 330, 479
DpnI	GATC	1 cut(s)	120
DpnII	GATC	1 cut(s)	118
EaeI	YGGCCR	1 cut(s)	302
Eam1104I	CTCTTC	1 cut(s)	487
EarI	CTCTTC	1 cut(s)	487
Eco130I	CCWWGG	2 cut(s)	7, 299
Eco24I	GRGCYC	1 cut(s)	551
Eco57I	CTGAAG	1 cut(s)	182
Eco88I	CYCGRG	1 cut(s)	194
Eco91I	GGTNACC	1 cut(s)	314
EcoO65I	GGTNACC	1 cut(s)	314
EcoT14I	CCWWGG	2 cut(s)	7, 299
EcoT38I	GRGCYC	1 cut(s)	551
ErhI	CCWWGG	2 cut(s)	7, 299
FaeI	CATG	5 cut(s)	19, 90, 177, 303, 592
FalI	AAGNNNNNCTT	2 cut(s)	123, 155
FatI	CATG	5 cut(s)	15, 86, 173, 299, 588
Fnu4HI	GCNGC	1 cut(s)	96
FokI	GGATG	1 cut(s)	479
FriOI	GRGCYC	1 cut(s)	551
Fsp4HI	GCNGC	1 cut(s)	96
FspBI	CTAG	1 cut(s)	39
GluI	GCNGC	1 cut(s)	96
GsuI	CTGGAG	1 cut(s)	311
HaeIII	GGCC	3 cut(s)	5, 12, 304
HapII	CCGG	1 cut(s)	135
Hin1II	CATG	5 cut(s)	19, 90, 177, 303, 592
HincII	GTYRAC	1 cut(s)	562
HindII	GTYRAC	1 cut(s)	562
HinfI	GANTC	1 cut(s)	19
HpaII	CCGG	1 cut(s)	135
HphI	GGTGA	3 cut(s)	70, 219, 326
Hpy166II	GTNNAC	2 cut(s)	427, 562
Hpy188I	TCNGA	1 cut(s)	354
Hpy188III	TCNNGA	1 cut(s)	179
Hpy8I	GTNNAC	2 cut(s)	427, 562
HpyAV	CCTTC	5 cut(s)	234, 250, 436, 464, 536
HpyCH4III	ACNGT	1 cut(s)	349
HpyCH4V	TGCA	5 cut(s)	90, 257, 268, 515, 592
HpyF10VI	GCNNNNNNNGC	2 cut(s)	131, 274
HpyF3I	CTNAG	3 cut(s)	235, 330, 479
Hsp92II	CATG	5 cut(s)	19, 90, 177, 303, 592
Kzo9I	GATC	1 cut(s)	118
LmnI	GCTCC	2 cut(s)	446, 508
LpnPI	CCDG	4 cut(s)	148, 171, 275, 399
MaeI	CTAG	1 cut(s)	39
MaeIII	GTNAC	3 cut(s)	61, 314, 343
MalI	GATC	1 cut(s)	120
MboI	GATC	1 cut(s)	118
MboII	GAAGA	2 cut(s)	416, 504
MhlI	GDGCHC	1 cut(s)	551
MlsI	TGGCCA	1 cut(s)	304
MluCI	AATT	9 cut(s)	107, 144, 244, 320, 357, 369, 391, 516, 593
MluNI	TGGCCA	1 cut(s)	304
MnlI	CCTC	4 cut(s)	50, 175, 190, 394
Mox20I	TGGCCA	1 cut(s)	304
MscI	TGGCCA	1 cut(s)	304
MseI	TTAA	1 cut(s)	461
Msp20I	TGGCCA	1 cut(s)	304
MspI	CCGG	1 cut(s)	135
MspR9I	CCNGG	1 cut(s)	136
MwoI	GCNNNNNNNGC	2 cut(s)	131, 274
NciI	CCSGG	1 cut(s)	136
NcoI	CCATGG	1 cut(s)	299
NdeII	GATC	1 cut(s)	118
NlaIII	CATG	5 cut(s)	19, 90, 177, 303, 592
NlaIV	GGNNCC	2 cut(s)	378, 448
NmuCI	GTSAC	2 cut(s)	314, 343
PfeI	GAWTC	1 cut(s)	19
PflMI	CCANNNNNTGG	1 cut(s)	311
PkrI	GCNGC	1 cut(s)	97
PshBI	ATTAAT	1 cut(s)	461
PspEI	GGTNACC	1 cut(s)	314
PspN4I	GGNNCC	2 cut(s)	378, 448
PspPI	GGNCC	1 cut(s)	4
RsaI	GTAC	2 cut(s)	428, 537
RsaNI	GTAC	2 cut(s)	427, 536
SaqAI	TTAA	1 cut(s)	461
SatI	GCNGC	1 cut(s)	96
Sau3AI	GATC	1 cut(s)	118
Sau96I	GGNCC	1 cut(s)	4
ScrFI	CCNGG	1 cut(s)	136
SduI	GDGCHC	1 cut(s)	551
SetI	ASST	5 cut(s)	61, 226, 265, 513, 535
Sse9I	AATT	9 cut(s)	107, 144, 244, 320, 357, 369, 391, 516, 593
SsiI	CCGC	1 cut(s)	96
SspI	AATATT	1 cut(s)	459
SspMI	CTAG	1 cut(s)	39
StyD4I	CCNGG	1 cut(s)	134
StyI	CCWWGG	2 cut(s)	7, 299
TaaI	ACNGT	1 cut(s)	349
TaqI	TCGA	2 cut(s)	148, 156
TasI	AATT	9 cut(s)	107, 144, 244, 320, 357, 369, 391, 516, 593
TatI	WGTACW	1 cut(s)	535
TauI	GCSGC	1 cut(s)	98
TfiI	GAWTC	1 cut(s)	19
Tru1I	TTAA	1 cut(s)	461
Tru9I	TTAA	1 cut(s)	461
TscAI	CASTG	2 cut(s)	57, 393
TseFI	GTSAC	2 cut(s)	314, 343
Tsp45I	GTSAC	2 cut(s)	314, 343
TspDTI	ATGAA	2 cut(s)	483, 577
TspRI	CASTG	2 cut(s)	57, 393
Van91I	CCANNNNNTGG	1 cut(s)	311
VspI	ATTAAT	1 cut(s)	461
XapI	RAATTY	1 cut(s)	144
XspI	CTAG	1 cut(s)	39

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.