Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0016760.1

Orthogroup ID

OG0001852

Physical Location & Seq

Genomic Coordinates Reverse (-)

270 .. 1481

Gene Structure 1212 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0016760.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1212 bp

atgctaccttcacaagaactggggttgagtttctttaatgcaaccgaggggctacagcagccgctggaggaattgtttctagagctaacccccaggccaaattgcataatctcagacatgtgtttgccatggacaatcaacgtagctcgaaagtttcacattccaagaatatctttcattggaaccagttgcatttgtcttctatgcattcataatatgctcatatccagggtttttgagaaaataacctctccattcgagtactttgttgtgcctgacttccctgatcgggttgagataacaaaagctcagctgccacagaatatgacaccagtgttgacagatctttttgaaaaaacttcagcagctgagagggagacatatggggtaattatgaatacatttgaagagttggagccggcatatgctaaaggatacaagaaggcaagaaaggataaagtatggtgtattggtccggtttcactgtgcaacaaagacgatttagatatggcacaaaggggtaacaagaccacaattgatgaaaaccagtgcttgaagtggcttgattcctggggaccaagtactgtactatatgcttgccttggaagtttatgcaatctcacagatgagcaactgatagaacttggactgggattagaggcatcgaacagaccttttgtgtgggttgtaaggggtggtgttcaatcagagcctatggaaaagttgtttaaagaaaatggatttgaggaaaggaccaaagaaaggagccttttgattcggggttgggcaccgcaaacactgatactatcacacccttcagttggtgggttcctaacacattgcggctggaattccattttagaaggtgtatgtgctgggttgcctatgatcacattgccactgtttggagaccaatttctcaatgagaaattaattggacagattctaaacatttctgtgaaggttggaggggatgatccaataacattgagggaggaggagaagaatagggtgttggtgagaaaggaaaatgtgaagaatgcgatagagaagttgatgaatggagaagatagcaaagggagaaaaggaagagccagggagcttgccgagatggcaaagagagcagtagaaaaaggaggttcttcacaccttgacattgcactgctaatccaagatattctgcaacaaggaaattgcatagagaggagctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0006629 GO:0008150 GO:0008152 GO:0008194 GO:0008202 GO:0009058 GO:0009314 GO:0009411 GO:0009416 GO:0009605 GO:0009607 GO:0009628 GO:0009636 GO:0009812 GO:0009813 GO:0010224 GO:0010817 GO:0016128 GO:0016131 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0042221 GO:0042440 GO:0042445 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044464 GO:0046148 GO:0046527 GO:0050403 GO:0050502 GO:0050896 GO:0051552 GO:0051553 GO:0051554 GO:0051555 GO:0051704 GO:0051707 GO:0065007 GO:0065008 GO:0071704 GO:0080043 GO:0080044 GO:0080046 GO:0098754 GO:1901360 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko01110 map01110

Pfam Domains

Protein Families

UDPGT

Protein Analysis

403

Amino Acids

45.29

Weight (kDa)

5.53

Isoelectric Point (pI)

46.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001852)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36750 AT2G36760 AT2G36770 AT2G36780 AT2G36790 AT2G36800 AT3G53160
fragaria_vesca	FvH4_6g13320 FvH4_6g17020 FvH4_6g17030 FvH4_6g17063
malus_domestica	MD12G1104300.v1.1 MD12G1104800.v1.1
prunus_persica	Prupe.7G124200_v2.0.a1 Prupe.7G124300_v2.0.a1 Prupe.7G124400_v2.0.a1 Prupe.7G124500_v2.0.a1 Prupe.7G124600_v2.0.a1
pyrus_communis	pycom12g10290 pycom12g10300
rosa_chinensis	RchiOBHm_Chr3g0466191 RchiOBHm_Chr3g0471011 RchiOBHm_Chr3g0471051 RchiOBHm_Chr3g0471071 RchiOBHm_Chr3g0471081
rosa_laevigata	RLG00000024207 RLG00000024208 RLG00000024209 RLG00000024598
rosa_multiflora	Rmu_sc0000350.1_g000005 Rmu_sc0000839.1_g000004 Rmu_sc0000839.1_g000005 Rmu_sc0000839.1_g000006 Rmu_sc0016760.1_g000001
rosa_roxburghii	Rroxscaffold_6G00410310
rosa_rugosa	Rorug03G0079900 Rorug03G0114900 Rorug03G0115000 Rorug03G0115100 Rorug03G0115200
rosa_samantha	Rh6DG066500
rosa_wichuraiana	Rw3G011920 Rw3G015460 Rw3G015470 Rw3G015480 Rw3G015490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	787
AccB7I	CCANNNNNTGG	1 cut(s)	905
AciI	CCGC	3 cut(s)	62, 791, 843
AclWI	GGATC	1 cut(s)	971
AcsI	RAATTY	1 cut(s)	850
AcuI	CTGAAG	2 cut(s)	345, 801
AfaI	GTAC	3 cut(s)	263, 583, 588
AfiI	CCNNNNNNNGG	4 cut(s)	289, 762, 821, 905
AflIII	ACRYGT	1 cut(s)	117
AgsI	TTSAA	4 cut(s)	353, 407, 556, 704
AjnI	CCWGG	4 cut(s)	92, 227, 569, 1094
AjuI	GAANNNNNNNTTGG	2 cut(s)	998, 1030
AluBI	AGCT	7 cut(s)	85, 146, 308, 313, 368, 1102, 1209
AluI	AGCT	7 cut(s)	85, 146, 308, 313, 368, 1102, 1209
Alw26I	GTCTC	2 cut(s)	371, 903
AlwI	GGATC	1 cut(s)	971
AlwNI	CAGNNNCTG	2 cut(s)	64, 368
AoxI	GGCC	1 cut(s)	95
ApeKI	GCWGC	3 cut(s)	58, 313, 365
ApoI	RAATTY	1 cut(s)	850
AseI	ATTAAT	1 cut(s)	932
Asp700I	GAANNNNTTC	1 cut(s)	75
AspS9I	GGNCC	3 cut(s)	473, 575, 753
AsuHPI	GGTGA	1 cut(s)	1030
AvaII	GGWCC	3 cut(s)	473, 575, 753
BaeGI	GKGCMC	1 cut(s)	790
BanI	GGYRCC	1 cut(s)	787
BbsI	GAAGAC	1 cut(s)	191
BbvI	GCAGC	3 cut(s)	70, 300, 377
BccI	CCATC	1 cut(s)	1105
BciT130I	CCWGG	4 cut(s)	94, 229, 571, 1096
BciVI	GTATCC	1 cut(s)	428
BclI	TGATCA	1 cut(s)	888
BcoDI	GTCTC	2 cut(s)	371, 903
BfaI	CTAG	1 cut(s)	80
BfmI	CTRYAG	1 cut(s)	53
BfuI	GTATCC	1 cut(s)	428
BglI	GCCNNNNNGGC	1 cut(s)	1112
BglII	AGATCT	1 cut(s)	343
BisI	GCNGC	5 cut(s)	59, 62, 314, 366, 844
BlpI	GCTNAGC	1 cut(s)	309
BlsI	GCNGC	5 cut(s)	60, 63, 315, 367, 845
BmcAI	AGTACT	2 cut(s)	263, 583
Bme1390I	CCNGG	4 cut(s)	94, 229, 571, 1096
Bme18I	GGWCC	3 cut(s)	473, 575, 753
BmgT120I	GGNCC	3 cut(s)	473, 575, 753
BmiI	GGNNCC	6 cut(s)	184, 417, 576, 767, 789, 830
BmrFI	CCNGG	4 cut(s)	94, 229, 571, 1096
BmrI	ACTGGG	2 cut(s)	29, 659
BmsI	GCATC	1 cut(s)	671
BmuI	ACTGGG	2 cut(s)	29, 659
BpiI	GAAGAC	1 cut(s)	191
BpmI	CTGGAG	1 cut(s)	86
Bpu1102I	GCTNAGC	1 cut(s)	309
BsaI	GGTCTC	1 cut(s)	903
BsaJI	CCNNGG	7 cut(s)	45, 92, 128, 228, 570, 601, 1095
BsaWI	WCCGGW	1 cut(s)	475
BsaXI	ACNNNNNCTCC	2 cut(s)	59, 89
Bsc4I	CCNNNNNNNGG	4 cut(s)	289, 762, 821, 905
Bse118I	RCCGGY	1 cut(s)	418
Bse1I	ACTGG	5 cut(s)	24, 186, 332, 547, 654
Bse3DI	GCAATG	3 cut(s)	838, 893, 1155
BseBI	CCWGG	4 cut(s)	94, 229, 571, 1096
BseDI	CCNNGG	7 cut(s)	45, 92, 128, 228, 570, 601, 1095
BseGI	GGATG	1 cut(s)	979
BseLI	CCNNNNNNNGG	4 cut(s)	289, 762, 821, 905
BseMI	GCAATG	3 cut(s)	838, 893, 1155
BseMII	CTCAG	3 cut(s)	126, 323, 360
BseNI	ACTGG	5 cut(s)	24, 186, 332, 547, 654
BseRI	GAGGAG	2 cut(s)	1010, 1013
BseSI	GKGCMC	1 cut(s)	790
BseXI	GCAGC	3 cut(s)	70, 300, 377
BseYI	CCCAGC	1 cut(s)	875
BshFI	GGCC	1 cut(s)	97
BshNI	GGYRCC	1 cut(s)	787
BsiSI	CCGG	2 cut(s)	419, 476
BslFI	GGGAC	1 cut(s)	588
BslI	CCNNNNNNNGG	4 cut(s)	289, 762, 821, 905
BsmAI	GTCTC	2 cut(s)	371, 903
BsmFI	GGGAC	1 cut(s)	588
BsmI	GAATGC	2 cut(s)	207, 1045
BsnI	GGCC	1 cut(s)	97
Bso31I	GGTCTC	1 cut(s)	903
Bsp1286I	GDGCHC	1 cut(s)	790
Bsp143I	GATC	4 cut(s)	286, 343, 888, 976
Bsp1720I	GCTNAGC	1 cut(s)	309
Bsp19I	CCATGG	1 cut(s)	128
BspACI	CCGC	3 cut(s)	62, 791, 843
BspANI	GGCC	1 cut(s)	97
BspCNI	CTCAG	3 cut(s)	125, 322, 361
BspLI	GGNNCC	6 cut(s)	184, 417, 576, 767, 789, 830
BspPI	GGATC	1 cut(s)	971
BspQI	GCTCTTC	1 cut(s)	1084
BspT107I	GGYRCC	1 cut(s)	787
BspTNI	GGTCTC	1 cut(s)	903
BsrDI	GCAATG	3 cut(s)	838, 893, 1155
BsrFI	RCCGGY	1 cut(s)	418
BsrI	ACTGG	5 cut(s)	24, 186, 332, 547, 654
BssAI	RCCGGY	1 cut(s)	418
BssECI	CCNNGG	7 cut(s)	45, 92, 128, 228, 570, 601, 1095
BssMI	GATC	4 cut(s)	286, 343, 888, 976
BssT1I	CCWWGG	2 cut(s)	128, 601
Bst2UI	CCWGG	4 cut(s)	94, 229, 571, 1096
Bst4CI	ACNGT	3 cut(s)	486, 586, 903
Bst6I	CTCTTC	2 cut(s)	402, 1084
BstC8I	GCNNGC	3 cut(s)	420, 598, 1104
BstDEI	CTNAG	3 cut(s)	112, 309, 369
BstDSI	CCRYGG	1 cut(s)	128
BstF5I	GGATG	1 cut(s)	979
BstKTI	GATC	4 cut(s)	289, 346, 891, 979
BstMAI	GTCTC	2 cut(s)	371, 903
BstMBI	GATC	4 cut(s)	286, 343, 888, 976
BstMWI	GCNNNNNNNGC	3 cut(s)	58, 1112, 1121
BstNI	CCWGG	4 cut(s)	94, 229, 571, 1096
BstNSI	RCATGY	1 cut(s)	121
BstSCI	CCNGG	4 cut(s)	92, 227, 569, 1094
BstSFI	CTRYAG	1 cut(s)	53
BstSLI	GKGCMC	1 cut(s)	790
BstV1I	GCAGC	3 cut(s)	70, 300, 377
BstV2I	GAAGAC	1 cut(s)	191
BstX2I	RGATCY	1 cut(s)	343
BstYI	RGATCY	1 cut(s)	343
BsuI	GTATCC	1 cut(s)	428
BsuRI	GGCC	1 cut(s)	97
BtgI	CCRYGG	1 cut(s)	128
BtsCI	GGATG	1 cut(s)	979
BtsI	GCAGTG	1 cut(s)	1160
BtsIMutI	CAGTG	6 cut(s)	339, 482, 554, 797, 899, 1160
Cac8I	GCNNGC	3 cut(s)	420, 598, 1104
CaiI	CAGNNNCTG	2 cut(s)	64, 368
Cfr10I	RCCGGY	1 cut(s)	418
Cfr13I	GGNCC	3 cut(s)	473, 575, 753
Csp6I	GTAC	3 cut(s)	262, 582, 587
CviAII	CATG	2 cut(s)	118, 129
CviQI	GTAC	3 cut(s)	262, 582, 587
DdeI	CTNAG	3 cut(s)	112, 309, 369
DpnI	GATC	4 cut(s)	288, 345, 890, 978
DpnII	GATC	4 cut(s)	286, 343, 888, 976
DraI	TTTAAA	1 cut(s)	730
Eam1104I	CTCTTC	2 cut(s)	402, 1084
EarI	CTCTTC	2 cut(s)	402, 1084
Eco130I	CCWWGG	2 cut(s)	128, 601
Eco31I	GGTCTC	1 cut(s)	903
Eco47I	GGWCC	3 cut(s)	473, 575, 753
Eco57I	CTGAAG	2 cut(s)	345, 801
EcoRI	GAATTC	1 cut(s)	850
EcoRII	CCWGG	4 cut(s)	92, 227, 569, 1094
EcoT14I	CCWWGG	2 cut(s)	128, 601
EcoT22I	ATGCAT	1 cut(s)	209
ErhI	CCWWGG	2 cut(s)	128, 601
FaeI	CATG	2 cut(s)	121, 132
FalI	AAGNNNNNCTT	2 cut(s)	157, 189
FaqI	GGGAC	1 cut(s)	588
FatI	CATG	2 cut(s)	117, 128
FauNDI	CATATG	2 cut(s)	382, 424
FbaI	TGATCA	1 cut(s)	888
Fnu4HI	GCNGC	5 cut(s)	59, 62, 314, 366, 844
FokI	GGATG	1 cut(s)	986
Fsp4HI	GCNGC	5 cut(s)	59, 62, 314, 366, 844
FspBI	CTAG	1 cut(s)	80
GluI	GCNGC	5 cut(s)	59, 62, 314, 366, 844
GsaI	CCCAGC	1 cut(s)	879
GsuI	CTGGAG	1 cut(s)	86
HaeIII	GGCC	1 cut(s)	97
HapII	CCGG	2 cut(s)	419, 476
Hin1II	CATG	2 cut(s)	121, 132
HincII	GTYRAC	1 cut(s)	339
HindII	GTYRAC	1 cut(s)	339
HinfI	GANTC	3 cut(s)	566, 775, 943
HpaII	CCGG	2 cut(s)	419, 476
HphI	GGTGA	1 cut(s)	1030
Hpy166II	GTNNAC	1 cut(s)	339
Hpy188I	TCNGA	2 cut(s)	115, 709
Hpy188III	TCNNGA	1 cut(s)	80
Hpy8I	GTNNAC	1 cut(s)	339
HpyAV	CCTTC	5 cut(s)	18, 436, 825, 857, 955
HpyCH4III	ACNGT	3 cut(s)	486, 586, 903
HpyCH4IV	ACGT	1 cut(s)	141
HpyCH4V	TGCA	9 cut(s)	41, 105, 192, 207, 489, 615, 1160, 1183, 1197
HpyF10VI	GCNNNNNNNGC	3 cut(s)	58, 1112, 1121
HpyF3I	CTNAG	3 cut(s)	112, 309, 369
HpySE526I	ACGT	1 cut(s)	141
Hsp92II	CATG	2 cut(s)	121, 132
KroI	GCCGGC	1 cut(s)	418
KroNI	GCCGGC	1 cut(s)	420
Ksp22I	TGATCA	1 cut(s)	888
Kzo9I	GATC	4 cut(s)	286, 343, 888, 976
LguI	GCTCTTC	1 cut(s)	1084
LmnI	GCTCC	4 cut(s)	415, 765, 1099, 1206
Lsp1109I	GCAGC	3 cut(s)	70, 300, 377
LweI	GCATC	1 cut(s)	671
MaeI	CTAG	1 cut(s)	80
MaeII	ACGT	1 cut(s)	141
MaeIII	GTNAC	1 cut(s)	521
MalI	GATC	4 cut(s)	288, 345, 890, 978
MboI	GATC	4 cut(s)	286, 343, 888, 976
MboII	GAAGA	7 cut(s)	191, 419, 1015, 1048, 1079, 1101, 1134
MfeI	CAATTG	1 cut(s)	534
MflI	RGATCY	1 cut(s)	343
MhlI	GDGCHC	1 cut(s)	790
MluCI	AATT	9 cut(s)	71, 100, 390, 534, 850, 914, 929, 933, 1192
MmeI	TCCRAC	2 cut(s)	393, 946
Mph1103I	ATGCAT	1 cut(s)	209
MroNI	GCCGGC	1 cut(s)	418
MroXI	GAANNNNTTC	1 cut(s)	75
MseI	TTAA	3 cut(s)	36, 729, 932
MslI	CAYNNNNRTG	1 cut(s)	956
MspA1I	CMGCKG	3 cut(s)	64, 313, 368
MspI	CCGG	2 cut(s)	419, 476
MspR9I	CCNGG	4 cut(s)	94, 229, 571, 1096
MunI	CAATTG	1 cut(s)	534
Mva1269I	GAATGC	2 cut(s)	207, 1045
MvaI	CCWGG	4 cut(s)	94, 229, 571, 1096
MwoI	GCNNNNNNNGC	3 cut(s)	58, 1112, 1121
NaeI	GCCGGC	1 cut(s)	420
NcoI	CCATGG	1 cut(s)	128
NdeI	CATATG	2 cut(s)	382, 424
NdeII	GATC	4 cut(s)	286, 343, 888, 976
NgoMIV	GCCGGC	1 cut(s)	418
NlaIII	CATG	2 cut(s)	121, 132
NlaIV	GGNNCC	6 cut(s)	184, 417, 576, 767, 789, 830
NmeAIII	GCCGAG	1 cut(s)	1132
NsiI	ATGCAT	1 cut(s)	209
NspI	RCATGY	1 cut(s)	121
PciI	ACATGT	1 cut(s)	117
PciSI	GCTCTTC	1 cut(s)	1084
PctI	GAATGC	2 cut(s)	207, 1045
PdiI	GCCGGC	1 cut(s)	420
PdmI	GAANNNNTTC	1 cut(s)	75
PfeI	GAWTC	3 cut(s)	566, 775, 943
PflMI	CCANNNNNTGG	1 cut(s)	905
PkrI	GCNGC	5 cut(s)	60, 63, 315, 367, 845
PscI	ACATGT	1 cut(s)	117
PshBI	ATTAAT	1 cut(s)	932
Psp6I	CCWGG	4 cut(s)	92, 227, 569, 1094
PspFI	CCCAGC	1 cut(s)	875
PspGI	CCWGG	4 cut(s)	92, 227, 569, 1094
PspN4I	GGNNCC	6 cut(s)	184, 417, 576, 767, 789, 830
PspPI	GGNCC	3 cut(s)	473, 575, 753
PstNI	CAGNNNCTG	2 cut(s)	64, 368
PsuI	RGATCY	1 cut(s)	343
PvuII	CAGCTG	2 cut(s)	313, 368
RsaI	GTAC	3 cut(s)	263, 583, 588
RsaNI	GTAC	3 cut(s)	262, 582, 587
RseI	CAYNNNNRTG	1 cut(s)	956
SapI	GCTCTTC	1 cut(s)	1084
SaqAI	TTAA	3 cut(s)	36, 729, 932
SatI	GCNGC	5 cut(s)	59, 62, 314, 366, 844
Sau3AI	GATC	4 cut(s)	286, 343, 888, 976
Sau96I	GGNCC	3 cut(s)	473, 575, 753
ScaI	AGTACT	2 cut(s)	263, 583
ScrFI	CCNGG	4 cut(s)	94, 229, 571, 1096
SduI	GDGCHC	1 cut(s)	790
SfaNI	GCATC	1 cut(s)	671
SfcI	CTRYAG	1 cut(s)	53
SinI	GGWCC	3 cut(s)	473, 575, 753
SmiMI	CAYNNNNRTG	1 cut(s)	956
Sse9I	AATT	9 cut(s)	71, 100, 390, 534, 850, 914, 929, 933, 1192
SsiI	CCGC	3 cut(s)	62, 791, 843
SspMI	CTAG	1 cut(s)	80
StyD4I	CCNGG	4 cut(s)	92, 227, 569, 1094
StyI	CCWWGG	2 cut(s)	128, 601
TaaI	ACNGT	3 cut(s)	486, 586, 903
TaiI	ACGT	1 cut(s)	144
TaqI	TCGA	3 cut(s)	148, 258, 665
TasI	AATT	9 cut(s)	71, 100, 390, 534, 850, 914, 929, 933, 1192
TatI	WGTACW	3 cut(s)	261, 581, 586
TauI	GCSGC	2 cut(s)	64, 846
TfiI	GAWTC	3 cut(s)	566, 775, 943
Tru1I	TTAA	3 cut(s)	36, 729, 932
Tru9I	TTAA	3 cut(s)	36, 729, 932
TscAI	CASTG	6 cut(s)	339, 489, 554, 804, 906, 1167
TseI	GCWGC	3 cut(s)	58, 313, 365
TspDTI	ATGAA	5 cut(s)	166, 200, 410, 555, 1073
TspRI	CASTG	6 cut(s)	339, 489, 554, 804, 906, 1167
Van91I	CCANNNNNTGG	1 cut(s)	905
VpaK11BI	GGWCC	3 cut(s)	473, 575, 753
VspI	ATTAAT	1 cut(s)	932
XapI	RAATTY	1 cut(s)	850
XbaI	TCTAGA	1 cut(s)	79
XceI	RCATGY	1 cut(s)	121
XmnI	GAANNNNTTC	1 cut(s)	75
XspI	CTAG	1 cut(s)	80
ZrmI	AGTACT	2 cut(s)	263, 583
Zsp2I	ATGCAT	1 cut(s)	209

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.