Rorug03G0115000

Belongs to the UDP-glycosyltransferase family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
Physical Location & Seq
Forward (+)
9325340 .. 9326204
865 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0115000.1

Sequence Viewer

Length: 699 bp
ATGACCTCATTCGAGGCATTCTTCGAGGGCTGGCTGGTTCGGCAAGAGCACTACTTGGACGAACTCCAATCGGCCCAGCAGCGAGCCCATGAAGCCCGCGACGTCGATCTGAGAGACCTGGTCTCTCGGGTGCTGCTCCATTACCGGCAATACTATGAAGAGAAATCGAGACTTGCGCAGAGAGATGTGTTTCTGGTGTTTTCTCCGACTTGGTTCACTTCGCTGGAGCGGGCCCTGCTCTGGATCGCCGGGTTCAAGCCGGGTCTGGCATTCCGGCTGGTCTCGGACTCCGTACCCGACTTGTCCGAGGACCAGCGGGTCCGGATGACCCGGCTCATGGAGGAGACCCGGGTCGAGGAGCGGGCGCTGGATGATAAGCTGGCCAAGATTCACGAGAGCGTGGCGGCCCCACCGCTCGTCGACGTGGCGCGTCGCCACGCGCGGTGTTTGGACGGTGAGACTGCGGAGGAGGAGGAGGCGGCGACGCGGTCGTTGAAGTCGGCATTGGAGGGCGTGGTGGCGAATGCGAATTTGCTGAGGGTCACCATAGCTACGAAGCTGGTGGAGATGCTGAGCGGTGCTCAGGCGGTTCGGTTTTTGGTCGCGGTGGCTCAGTTTCAGCTCAAGATTAGGAACTGGGGATTGGAGAGGGACGCAGCCGAGAAACAGCGGCGGTCCGGCGGAGGAGGACGGTGGTAG

Protein Analysis

232

Amino Acids

26.57

Weight (kDa)

6.26

Isoelectric Point (pI)

48.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DOG1 PF14144 19 - 94 2e-26 Seed dormancy control
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 317
AatII GACGTC 1 cut(s) 105
Acc16I TGCGCA 1 cut(s) 177
AccBSI CCGCTC 4 cut(s) 229, 361, 415, 576
AccI GTMKAC 1 cut(s) 420
AccII CGCG 6 cut(s) 99, 430, 440, 442, 487, 605
AccIII TCCGGA 1 cut(s) 321
AclWI GGATC 1 cut(s) 251
AcoI YGGCCR 1 cut(s) 381
AcsI RAATTY 1 cut(s) 529
AcyI GRCGYC 1 cut(s) 102
AfaI GTAC 1 cut(s) 294
AfiI CCNNNNNNNGG 3 cut(s) 240, 337, 355
AgsI TTSAA 2 cut(s) 256, 496
AjiI CACGTC 1 cut(s) 424
AjnI CCWGG 1 cut(s) 117
AjuI GAANNNNNNNTTGG 4 cut(s) 488, 520, 626, 658
AluBI AGCT 4 cut(s) 379, 551, 559, 622
AluI AGCT 4 cut(s) 379, 551, 559, 622
Alw21I GWGCWC 2 cut(s) 51, 583
Alw26I GTCTC 6 cut(s) 108, 127, 163, 286, 338, 452
AlwI GGATC 1 cut(s) 251
Ama87I CYCGRG 2 cut(s) 126, 348
Aor13HI TCCGGA 1 cut(s) 321
AoxI GGCC 4 cut(s) 72, 231, 381, 405
ApaI GGGCCC 1 cut(s) 235
ApeKI GCWGC 3 cut(s) 79, 133, 656
ApoI RAATTY 1 cut(s) 529
AspLEI GCGC 4 cut(s) 178, 367, 430, 442
AspS9I GGNCC 7 cut(s) 73, 231, 232, 310, 319, 406, 675
AsuC2I CCSGG 5 cut(s) 250, 261, 331, 349, 350
AsuHPI GGTGA 2 cut(s) 467, 535
AvaI CYCGRG 2 cut(s) 126, 348
AvaII GGWCC 3 cut(s) 310, 319, 675
BaeGI GKGCMC 1 cut(s) 235
BalI TGGCCA 1 cut(s) 383
BanII GRGCYC 2 cut(s) 88, 235
BauI CACGAG 1 cut(s) 392
Bbv12I GWGCWC 2 cut(s) 51, 583
BbvCI CCTCAGC 1 cut(s) 536
BbvI GCAGC 3 cut(s) 91, 120, 668
BciT130I CCWGG 1 cut(s) 119
BcnI CCSGG 5 cut(s) 250, 261, 331, 349, 350
BcoDI GTCTC 6 cut(s) 108, 127, 163, 286, 338, 452
BfoI RGCGCY 1 cut(s) 368
BisI GCNGC 6 cut(s) 80, 134, 405, 480, 657, 671
BlpI GCTNAGC 1 cut(s) 572
BlsI GCNGC 6 cut(s) 81, 135, 406, 481, 658, 672
Bme1390I CCNGG 6 cut(s) 119, 250, 261, 331, 349, 350
Bme18I GGWCC 3 cut(s) 310, 319, 675
BmeT110I CYCGRG 2 cut(s) 126, 348
BmgBI CACGTC 1 cut(s) 424
BmgT120I GGNCC 7 cut(s) 73, 231, 232, 310, 319, 406, 675
BmiI GGNNCC 3 cut(s) 233, 320, 408
BmrFI CCNGG 6 cut(s) 119, 250, 261, 331, 349, 350
BmrI ACTGGG 1 cut(s) 646
BmsI GCATC 1 cut(s) 558
BmuI ACTGGG 1 cut(s) 646
BoxI GACNNNNGTC 1 cut(s) 350
BplI GAGNNNNNCTC 2 cut(s) 565, 597
BpmI CTGGAG 1 cut(s) 245
Bpu10I CCTNAGC 2 cut(s) 536, 582
Bpu1102I GCTNAGC 1 cut(s) 572
BpuEI CTTGAG 1 cut(s) 608
BpuMI CCSGG 5 cut(s) 250, 261, 331, 349, 350
BsaHI GRCGYC 1 cut(s) 102
BsaI GGTCTC 4 cut(s) 108, 127, 286, 338
BsaJI CCNNGG 2 cut(s) 306, 348
BsaWI WCCGGW 1 cut(s) 321
Bsc4I CCNNNNNNNGG 3 cut(s) 240, 337, 355
Bse118I RCCGGY 1 cut(s) 144
Bse1I ACTGG 1 cut(s) 641
BseAI TCCGGA 1 cut(s) 321
BseBI CCWGG 1 cut(s) 119
BseDI CCNNGG 2 cut(s) 306, 348
BseGI GGATG 2 cut(s) 330, 376
BseLI CCNNNNNNNGG 3 cut(s) 240, 337, 355
BseMII CTCAG 5 cut(s) 101, 527, 563, 596, 626
BseNI ACTGG 1 cut(s) 641
BseRI GAGGAG 6 cut(s) 356, 371, 482, 485, 488, 699
BseSI GKGCMC 1 cut(s) 235
BseXI GCAGC 3 cut(s) 91, 120, 668
BseYI CCCAGC 1 cut(s) 75
Bsh1236I CGCG 6 cut(s) 99, 430, 440, 442, 487, 605
Bsh1285I CGRYCG 1 cut(s) 491
BshFI GGCC 4 cut(s) 74, 233, 383, 407
BsiEI CGRYCG 1 cut(s) 491
BsiHKAI GWGCWC 2 cut(s) 51, 583
BsiHKCI CYCGRG 2 cut(s) 126, 348
BsiSI CCGG 8 cut(s) 145, 249, 260, 274, 322, 331, 349, 678
BslFI GGGAC 1 cut(s) 665
BslI CCNNNNNNNGG 3 cut(s) 240, 337, 355
BsmAI GTCTC 6 cut(s) 108, 127, 163, 286, 338, 452
BsmFI GGGAC 1 cut(s) 665
BsmI GAATGC 3 cut(s) 17, 269, 529
BsnI GGCC 4 cut(s) 74, 233, 383, 407
Bso31I GGTCTC 4 cut(s) 108, 127, 286, 338
BsoBI CYCGRG 2 cut(s) 126, 348
Bsp120I GGGCCC 1 cut(s) 231
Bsp1286I GDGCHC 4 cut(s) 51, 88, 235, 583
Bsp13I TCCGGA 1 cut(s) 321
Bsp143I GATC 2 cut(s) 106, 243
Bsp1720I GCTNAGC 1 cut(s) 572
BspANI GGCC 4 cut(s) 74, 233, 383, 407
BspCNI CTCAG 5 cut(s) 102, 528, 564, 595, 625
BspEI TCCGGA 1 cut(s) 321
BspFNI CGCG 6 cut(s) 99, 430, 440, 442, 487, 605
BspLI GGNNCC 3 cut(s) 233, 320, 408
BspPI GGATC 1 cut(s) 251
BspTNI GGTCTC 4 cut(s) 108, 127, 286, 338
BsrBI CCGCTC 4 cut(s) 229, 361, 415, 576
BsrFI RCCGGY 1 cut(s) 144
BsrI ACTGG 1 cut(s) 641
BssAI RCCGGY 1 cut(s) 144
BssECI CCNNGG 2 cut(s) 306, 348
BssMI GATC 2 cut(s) 106, 243
BssNI GRCGYC 1 cut(s) 102
BssSI CACGAG 1 cut(s) 392
Bst2BI CACGAG 1 cut(s) 392
Bst2UI CCWGG 1 cut(s) 119
Bst4CI ACNGT 2 cut(s) 455, 693
Bst6I CTCTTC 1 cut(s) 153
BstACI GRCGYC 1 cut(s) 102
BstC8I GCNNGC 6 cut(s) 32, 84, 97, 231, 363, 381
BstDEI CTNAG 5 cut(s) 110, 536, 572, 582, 612
BstEII GGTNACC 1 cut(s) 541
BstF5I GGATG 2 cut(s) 330, 376
BstFNI CGCG 6 cut(s) 99, 430, 440, 442, 487, 605
BstH2I RGCGCY 1 cut(s) 368
BstHHI GCGC 4 cut(s) 178, 367, 430, 442
BstKTI GATC 2 cut(s) 109, 246
BstMAI GTCTC 6 cut(s) 108, 127, 163, 286, 338, 452
BstMBI GATC 2 cut(s) 106, 243
BstMCI CGRYCG 1 cut(s) 491
BstMWI GCNNNNNNNGC 3 cut(s) 40, 92, 235
BstNI CCWGG 1 cut(s) 119
BstPAI GACNNNNGTC 1 cut(s) 350
BstPI GGTNACC 1 cut(s) 541
BstSCI CCNGG 6 cut(s) 117, 248, 259, 329, 347, 348
BstSLI GKGCMC 1 cut(s) 235
BstUI CGCG 6 cut(s) 99, 430, 440, 442, 487, 605
BstV1I GCAGC 3 cut(s) 91, 120, 668
BsuRI GGCC 4 cut(s) 74, 233, 383, 407
BtrI CACGTC 1 cut(s) 424
BtsCI GGATG 2 cut(s) 330, 376
Cac8I GCNNGC 6 cut(s) 32, 84, 97, 231, 363, 381
CfoI GCGC 4 cut(s) 178, 367, 430, 442
Cfr10I RCCGGY 1 cut(s) 144
Cfr13I GGNCC 7 cut(s) 73, 231, 232, 310, 319, 406, 675
Cfr9I CCCGGG 1 cut(s) 348
CpoI CGGWCCG 1 cut(s) 675
CseI GACGC 3 cut(s) 419, 493, 662
CsiI ACCWGGT 1 cut(s) 117
Csp6I GTAC 1 cut(s) 293
CspI CGGWCCG 1 cut(s) 675
CviAII CATG 2 cut(s) 89, 337
CviQI GTAC 1 cut(s) 293
DdeI CTNAG 5 cut(s) 110, 536, 572, 582, 612
DpnI GATC 2 cut(s) 108, 245
DpnII GATC 2 cut(s) 106, 243
DrdI GACNNNNNNGTC 1 cut(s) 317
DseDI GACNNNNNNGTC 1 cut(s) 317
EaeI YGGCCR 1 cut(s) 381
Eam1104I CTCTTC 1 cut(s) 153
EarI CTCTTC 1 cut(s) 153
EciI GGCGGA 1 cut(s) 696
Eco24I GRGCYC 2 cut(s) 88, 235
Eco31I GGTCTC 4 cut(s) 108, 127, 286, 338
Eco47I GGWCC 3 cut(s) 310, 319, 675
Eco88I CYCGRG 2 cut(s) 126, 348
Eco91I GGTNACC 1 cut(s) 541
EcoO109I RGGNCCY 1 cut(s) 232
EcoO65I GGTNACC 1 cut(s) 541
EcoRII CCWGG 1 cut(s) 117
EcoT38I GRGCYC 2 cut(s) 88, 235
FaeI CATG 2 cut(s) 92, 340
FaiI YATR 4 cut(s) 90, 156, 338, 548
FaqI GGGAC 1 cut(s) 665
FatI CATG 2 cut(s) 88, 336
FauI CCCGC 4 cut(s) 104, 222, 309, 354
FblI GTMKAC 1 cut(s) 420
Fnu4HI GCNGC 6 cut(s) 80, 134, 405, 480, 657, 671
FokI GGATG 2 cut(s) 337, 383
FriOI GRGCYC 2 cut(s) 88, 235
Fsp4HI GCNGC 6 cut(s) 80, 134, 405, 480, 657, 671
FspI TGCGCA 1 cut(s) 177
GlaI GCGC 4 cut(s) 177, 366, 429, 441
GluI GCNGC 6 cut(s) 80, 134, 405, 480, 657, 671
GsaI CCCAGC 1 cut(s) 79
GsuI CTGGAG 1 cut(s) 245
HaeII RGCGCY 1 cut(s) 368
HaeIII GGCC 4 cut(s) 74, 233, 383, 407
HapII CCGG 8 cut(s) 145, 249, 260, 274, 322, 331, 349, 678
HgaI GACGC 3 cut(s) 419, 493, 662
HhaI GCGC 4 cut(s) 178, 367, 430, 442
Hin1I GRCGYC 1 cut(s) 102
Hin1II CATG 2 cut(s) 92, 340
Hin6I GCGC 4 cut(s) 176, 365, 428, 440
HinP1I GCGC 4 cut(s) 176, 365, 428, 440
HincII GTYRAC 1 cut(s) 421
HindII GTYRAC 1 cut(s) 421
HinfI GANTC 2 cut(s) 287, 388
HpaII CCGG 8 cut(s) 145, 249, 260, 274, 322, 331, 349, 678
HphI GGTGA 2 cut(s) 467, 535
Hpy166II GTNNAC 2 cut(s) 216, 421
Hpy188I TCNGA 4 cut(s) 111, 207, 286, 307
Hpy188III TCNNGA 5 cut(s) 168, 241, 322, 392, 625
Hpy8I GTNNAC 2 cut(s) 216, 421
Hpy99I CGWCG 6 cut(s) 104, 107, 422, 425, 435, 487
HpyCH4III ACNGT 2 cut(s) 455, 693
HpyCH4IV ACGT 2 cut(s) 102, 423
HpyF10VI GCNNNNNNNGC 3 cut(s) 40, 92, 235
HpyF3I CTNAG 5 cut(s) 110, 536, 572, 582, 612
HpySE526I ACGT 2 cut(s) 102, 423
Hsp92I GRCGYC 1 cut(s) 102
Hsp92II CATG 2 cut(s) 92, 340
HspAI GCGC 4 cut(s) 176, 365, 428, 440
Kpn2I TCCGGA 1 cut(s) 321
Kzo9I GATC 2 cut(s) 106, 243
LmnI GCTCC 3 cut(s) 141, 226, 358
Lsp1109I GCAGC 3 cut(s) 91, 120, 668
LweI GCATC 1 cut(s) 558
MabI ACCWGGT 1 cut(s) 117
MaeII ACGT 2 cut(s) 102, 423
MaeIII GTNAC 1 cut(s) 541
MalI GATC 2 cut(s) 108, 245
MbiI CCGCTC 4 cut(s) 229, 361, 415, 576
MboI GATC 2 cut(s) 106, 243
MboII GAAGA 2 cut(s) 13, 170
MhlI GDGCHC 4 cut(s) 51, 88, 235, 583
MlsI TGGCCA 1 cut(s) 383
MluCI AATT 1 cut(s) 529
MluNI TGGCCA 1 cut(s) 383
MlyI GAGTC 1 cut(s) 281
MmeI TCCRAC 1 cut(s) 230
Mox20I TGGCCA 1 cut(s) 383
MroI TCCGGA 1 cut(s) 321
MscI TGGCCA 1 cut(s) 383
Msp20I TGGCCA 1 cut(s) 383
MspA1I CMGCKG 2 cut(s) 316, 670
MspI CCGG 8 cut(s) 145, 249, 260, 274, 322, 331, 349, 678
MspR9I CCNGG 6 cut(s) 119, 250, 261, 331, 349, 350
Mva1269I GAATGC 3 cut(s) 17, 269, 529
MvaI CCWGG 1 cut(s) 119
MvnI CGCG 6 cut(s) 99, 430, 440, 442, 487, 605
MwoI GCNNNNNNNGC 3 cut(s) 40, 92, 235
NciI CCSGG 5 cut(s) 250, 261, 331, 349, 350
NdeII GATC 2 cut(s) 106, 243
NlaIII CATG 2 cut(s) 92, 340
NlaIV GGNNCC 3 cut(s) 233, 320, 408
NmeAIII GCCGAG 1 cut(s) 685
NmuCI GTSAC 1 cut(s) 541
NsbI TGCGCA 1 cut(s) 177
PctI GAATGC 3 cut(s) 17, 269, 529
PfeI GAWTC 1 cut(s) 388
PflFI GACNNNGTC 2 cut(s) 119, 487
PkrI GCNGC 6 cut(s) 81, 135, 406, 481, 658, 672
PleI GAGTC 1 cut(s) 281
PpsI GAGTC 1 cut(s) 281
PshAI GACNNNNGTC 1 cut(s) 350
Psp6I CCWGG 1 cut(s) 117
PspEI GGTNACC 1 cut(s) 541
PspFI CCCAGC 1 cut(s) 75
PspGI CCWGG 1 cut(s) 117
PspN4I GGNNCC 3 cut(s) 233, 320, 408
PspOMI GGGCCC 1 cut(s) 231
PspPI GGNCC 7 cut(s) 73, 231, 232, 310, 319, 406, 675
PsyI GACNNNGTC 2 cut(s) 119, 487
RsaI GTAC 1 cut(s) 294
RsaNI GTAC 1 cut(s) 293
Rsr2I CGGWCCG 1 cut(s) 675
RsrII CGGWCCG 1 cut(s) 675
SalI GTCGAC 1 cut(s) 419
SatI GCNGC 6 cut(s) 80, 134, 405, 480, 657, 671
Sau3AI GATC 2 cut(s) 106, 243
Sau96I GGNCC 7 cut(s) 73, 231, 232, 310, 319, 406, 675
SchI GAGTC 1 cut(s) 281
ScrFI CCNGG 6 cut(s) 119, 250, 261, 331, 349, 350
SduI GDGCHC 4 cut(s) 51, 88, 235, 583
SetI ASST 8 cut(s) 8, 105, 120, 381, 426, 553, 561, 624
SexAI ACCWGGT 1 cut(s) 117
SfaNI GCATC 1 cut(s) 558
SgrDI CGTCGACG 1 cut(s) 419
SinI GGWCC 3 cut(s) 310, 319, 675
SmaI CCCGGG 1 cut(s) 350
SmlI CTYRAG 1 cut(s) 623
SmoI CTYRAG 1 cut(s) 623
Sse9I AATT 1 cut(s) 529
StyD4I CCNGG 6 cut(s) 117, 248, 259, 329, 347, 348
TaaI ACNGT 2 cut(s) 455, 693
TaiI ACGT 2 cut(s) 105, 426
TaqI TCGA 6 cut(s) 12, 24, 105, 167, 354, 420
TasI AATT 1 cut(s) 529
TauI GCSGC 3 cut(s) 407, 482, 673
TfiI GAWTC 1 cut(s) 388
TseFI GTSAC 1 cut(s) 541
TseI GCWGC 3 cut(s) 79, 133, 656
Tsp45I GTSAC 1 cut(s) 541
TspDTI ATGAA 2 cut(s) 105, 171
TspGWI ACGGA 1 cut(s) 280
TspMI CCCGGG 1 cut(s) 348
Tth111I GACNNNGTC 2 cut(s) 119, 487
VpaK11BI GGWCC 3 cut(s) 310, 319, 675
XapI RAATTY 1 cut(s) 529
XmaI CCCGGG 1 cut(s) 348
XmiI GTMKAC 1 cut(s) 420
ZraI GACGTC 1 cut(s) 103
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.