FvH4_6g17063

Belongs to the UDP-glycosyltransferase family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Forward (+)
11029957 .. 11031507
1551 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g17063.t1

Sequence Viewer

Length: 1470 bp
ATGGCTTCCCAAGAATACCAGCTTCACTTTGTCTTGTTTCCTTTCATGGCCCAAGGCCACATGATTCCAATGGTAGACATTGCTAGAATGCTTGCACAACACGGCGTGACTATCACCATAGTCACCACGCCACTTAATGCAGCTCGTTTCGAAACAGTTCTTGCTCGCGCCAAAGAATCGGGGTACCAAATCCGGTTGATGCAGCTGAAATTTCCATTCGAAGGAGCTGGCTTGCCTCATGGCTGTGAGAATTTGGACATGGTACCTTCTTTCAACTTGGCCTCAAATTTCTTCAATGCAACCAAAGGGCTACAAGAGCCAGTAGAAAAACTGTTTGAAGAACTGACCCCCAAGCCAAGTTGTATCATCTCAGATATGTGCTTGCCGTGGACTATCAACATCTCTCGCATGTTTAACATTCCGCGGATATCTTTCAGTGGAACATGTTGCTTTACTCTCCTATGTTTTAGCAATGCGCGCTTATCCAAGGTTCATGATGAGATAACATCAGAGACGGAGTATTTTGTCCTGCCTGACTTGCCAGATCGCATTGAGGTGACCAAGGCTCAGCTGCCAGGAACTATGGCACCAGACTTGGAAGAGTTTTATGAACAAATGCTTTCAGCTGAGATGGCCTCATATGGGATAATTATGAATAGCTTTGAAGAGTTGGAGCCAGCATATGTTCAAGAATACAAGAAGGTAAAGAAGGATAAAGTCTGGTGTGTTGGTCCTGCATCACTATGCAACAAAGATGACTTGGATAAGGCACAAAGAGGTAACAAGGCCTCGGTGGATGAACATTACTGCTTGAAGTGGCTTGATTCTTGGGAACCAAGCTCAGTACTTTATGCTTGCTTTGGAAGTTTATGTAATCTCATACCTGCACAACTGATAGAACTTGCATTGGGGCTGGAGGAATCCAATAAACCATTCATTTGGGCTGTGAGGGGAAGTAGCCAGTTAAAGGAATTGGAAAAGTGGATAACAGAAAATGGTTTTGAGGAAAGGACTAAAGAAAGGAGCCTGCTGATTCGGGGTTGGGCTCCGCAGACACTGATACTGTCACACCCTGCAGTTGGGGGTTTCTTGACACATTGTGGTTGGAACTCTACATTAGAAGGGATATGTGCTGGGGTGCCTTTGATTACATGGCCACTGTTCGGAGACCAATTTCTCGATGAGAAACTAGTAGACCAAATTCTAAAGATTGCGGTGAGAGTTGGGGTGGAATATCCAATGAAGTGGGGAGAGGAGGAAAGTATTGGGGTGTTGGTGAAAAAAGAAAATGTGAAAGAAGCAATAGACAAGTTGATGGATGGAGAAGTAAGTGAAGCGAGAAGAGATAGAGCCAGAGAGCTTGCTAAATTGGCAAAGAGAGCAGTACAAGAAGGGGGATCTTCTCACCTCAACATTCAACAACTAATCCAAGATATCATGCAACAAGGTAATTGCACAGAGACAAACTAA

Protein Analysis

490

Amino Acids

55.1

Weight (kDa)

5.14

Isoelectric Point (pI)

39.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_N PF26168 10 - 245 1.3e-09 Glycosyltransferase, N-terminal domain
UDPGT PF00201 281 - 398 4.5e-20 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 892
Acc65I GGTACC 2 cut(s) 183, 262
AccB1I GGYRCC 4 cut(s) 183, 262, 586, 1138
AccI GTMKAC 2 cut(s) 75, 1194
AccII CGCG 3 cut(s) 168, 424, 478
AciI CCGC 4 cut(s) 422, 424, 1049, 1214
AclWI GGATC 1 cut(s) 1405
AcoI YGGCCR 1 cut(s) 1154
AcsI RAATTY 4 cut(s) 209, 250, 286, 1200
AdeI CACNNNGTG 2 cut(s) 106, 1100
AfaI GTAC 4 cut(s) 185, 264, 846, 1386
AfiI CCNNNNNNNGG 5 cut(s) 221, 642, 967, 1079, 1163
AflIII ACRYGT 1 cut(s) 443
AgsI TTSAA 7 cut(s) 274, 295, 338, 665, 689, 814, 1418
AhlI ACTAGT 1 cut(s) 1189
AjnI CCWGG 1 cut(s) 574
AjuI GAANNNNNNNTTGG 2 cut(s) 917, 949
AluBI AGCT 9 cut(s) 22, 143, 205, 227, 571, 626, 660, 840, 1360
AluI AGCT 9 cut(s) 22, 143, 205, 227, 571, 626, 660, 840, 1360
Alw26I GTCTC 3 cut(s) 506, 1161, 1454
AlwI GGATC 1 cut(s) 1405
AlwNI CAGNNNCTG 1 cut(s) 1057
AoxI GGCC 6 cut(s) 48, 55, 279, 633, 786, 1154
ApeKI GCWGC 3 cut(s) 140, 202, 571
ApoI RAATTY 4 cut(s) 209, 250, 286, 1200
Asp700I GAANNNNTTC 1 cut(s) 156
Asp718I GGTACC 2 cut(s) 183, 262
AspLEI GCGC 3 cut(s) 170, 478, 480
AspS9I GGNCC 2 cut(s) 49, 731
AsuHPI GGTGA 6 cut(s) 106, 115, 568, 1228, 1288, 1397
AsuII TTCGAA 2 cut(s) 150, 219
AvaII GGWCC 1 cut(s) 731
BalI TGGCCA 1 cut(s) 1156
BanI GGYRCC 4 cut(s) 183, 262, 586, 1138
BanII GRGCYC 1 cut(s) 1048
BbvI GCAGC 3 cut(s) 152, 214, 558
BccI CCATC 3 cut(s) 625, 1309, 1313
BceAI ACGGC 2 cut(s) 118, 370
BciT130I CCWGG 1 cut(s) 576
BcoDI GTCTC 3 cut(s) 506, 1161, 1454
BcuI ACTAGT 1 cut(s) 1189
BfaI CTAG 2 cut(s) 84, 1190
BfmI CTRYAG 1 cut(s) 1074
BfuAI ACCTGC 1 cut(s) 892
BisI GCNGC 3 cut(s) 141, 203, 572
BlpI GCTNAGC 1 cut(s) 567
BlsI GCNGC 3 cut(s) 142, 204, 573
BmcAI AGTACT 1 cut(s) 846
Bme1390I CCNGG 1 cut(s) 576
Bme18I GGWCC 1 cut(s) 731
BmgT120I GGNCC 2 cut(s) 49, 731
BmiI GGNNCC 8 cut(s) 185, 264, 588, 675, 834, 1025, 1047, 1140
BmrFI CCNGG 1 cut(s) 576
BmsI GCATC 2 cut(s) 189, 746
BplI GAGNNNNNCTC 2 cut(s) 620, 652
BpmI CTGGAG 1 cut(s) 935
Bpu1102I GCTNAGC 1 cut(s) 567
Bpu14I TTCGAA 2 cut(s) 150, 219
BsaI GGTCTC 1 cut(s) 1161
BsaJI CCNNGG 6 cut(s) 52, 386, 422, 486, 561, 789
BsaWI WCCGGW 1 cut(s) 192
Bsc4I CCNNNNNNNGG 5 cut(s) 221, 642, 967, 1079, 1163
Bse1I ACTGG 2 cut(s) 320, 961
Bse3DI GCAATG 2 cut(s) 78, 478
BseBI CCWGG 1 cut(s) 576
BseDI CCNNGG 6 cut(s) 52, 386, 422, 486, 561, 789
BseGI GGATG 2 cut(s) 802, 1324
BseLI CCNNNNNNNGG 5 cut(s) 221, 642, 967, 1079, 1163
BseMI GCAATG 2 cut(s) 78, 478
BseMII CTCAG 4 cut(s) 384, 581, 618, 855
BseNI ACTGG 2 cut(s) 320, 961
BsePI GCGCGC 1 cut(s) 476
BseRI GAGGAG 1 cut(s) 1268
BseXI GCAGC 3 cut(s) 152, 214, 558
BseYI CCCAGC 1 cut(s) 1133
BsgI GTGCAG 1 cut(s) 870
Bsh1236I CGCG 3 cut(s) 168, 424, 478
BshFI GGCC 6 cut(s) 50, 57, 281, 635, 788, 1156
BshNI GGYRCC 4 cut(s) 183, 262, 586, 1138
BsiSI CCGG 1 cut(s) 193
BslI CCNNNNNNNGG 5 cut(s) 221, 642, 967, 1079, 1163
BsmAI GTCTC 3 cut(s) 506, 1161, 1454
BsmBI CGTCTC 1 cut(s) 506
BsmI GAATGC 1 cut(s) 93
BsnI GGCC 6 cut(s) 50, 57, 281, 635, 788, 1156
Bso31I GGTCTC 1 cut(s) 1161
Bsp119I TTCGAA 2 cut(s) 150, 219
Bsp1286I GDGCHC 1 cut(s) 1048
Bsp143I GATC 2 cut(s) 544, 1397
Bsp1720I GCTNAGC 1 cut(s) 567
BspACI CCGC 4 cut(s) 422, 424, 1049, 1214
BspANI GGCC 6 cut(s) 50, 57, 281, 635, 788, 1156
BspCNI CTCAG 4 cut(s) 383, 580, 619, 854
BspFNI CGCG 3 cut(s) 168, 424, 478
BspHI TCATGA 1 cut(s) 493
BspLI GGNNCC 8 cut(s) 185, 264, 588, 675, 834, 1025, 1047, 1140
BspMAI CTGCAG 1 cut(s) 1078
BspMI ACCTGC 1 cut(s) 892
BspPI GGATC 1 cut(s) 1405
BspT104I TTCGAA 2 cut(s) 150, 219
BspT107I GGYRCC 4 cut(s) 183, 262, 586, 1138
BspTNI GGTCTC 1 cut(s) 1161
BsrDI GCAATG 2 cut(s) 78, 478
BsrI ACTGG 2 cut(s) 320, 961
BssECI CCNNGG 6 cut(s) 52, 386, 422, 486, 561, 789
BssHII GCGCGC 1 cut(s) 476
BssMI GATC 2 cut(s) 544, 1397
BssT1I CCWWGG 3 cut(s) 52, 486, 561
Bst2UI CCWGG 1 cut(s) 576
Bst4CI ACNGT 4 cut(s) 157, 333, 1065, 1161
Bst6I CTCTTC 3 cut(s) 594, 660, 1336
BstBI TTCGAA 2 cut(s) 150, 219
BstDEI CTNAG 4 cut(s) 370, 567, 627, 841
BstDSI CCRYGG 2 cut(s) 386, 422
BstEII GGTNACC 1 cut(s) 556
BstF5I GGATG 2 cut(s) 802, 1324
BstFNI CGCG 3 cut(s) 168, 424, 478
BstHHI GCGC 3 cut(s) 170, 478, 480
BstKTI GATC 2 cut(s) 547, 1400
BstMAI GTCTC 3 cut(s) 506, 1161, 1454
BstMBI GATC 2 cut(s) 544, 1397
BstMWI GCNNNNNNNGC 6 cut(s) 316, 477, 538, 632, 1370, 1379
BstNI CCWGG 1 cut(s) 576
BstNSI RCATGY 2 cut(s) 412, 447
BstPI GGTNACC 1 cut(s) 556
BstSCI CCNGG 1 cut(s) 574
BstSFI CTRYAG 1 cut(s) 1074
BstUI CGCG 3 cut(s) 168, 424, 478
BstV1I GCAGC 3 cut(s) 152, 214, 558
BstX2I RGATCY 1 cut(s) 1397
BstXI CCANNNNNNTGG 2 cut(s) 939, 1245
BstYI RGATCY 1 cut(s) 1397
BsuRI GGCC 6 cut(s) 50, 57, 281, 635, 788, 1156
BtgI CCRYGG 2 cut(s) 386, 422
BtsCI GGATG 2 cut(s) 802, 1324
BtsIMutI CAGTG 3 cut(s) 442, 1055, 1157
BveI ACCTGC 1 cut(s) 892
CaiI CAGNNNCTG 1 cut(s) 1057
CciI TCATGA 1 cut(s) 493
CfoI GCGC 3 cut(s) 170, 478, 480
Cfr13I GGNCC 2 cut(s) 49, 731
Cfr42I CCGCGG 1 cut(s) 425
Csp6I GTAC 4 cut(s) 184, 263, 845, 1385
CviAII CATG 9 cut(s) 46, 61, 239, 259, 409, 444, 494, 1152, 1438
CviQI GTAC 4 cut(s) 184, 263, 845, 1385
DdeI CTNAG 4 cut(s) 370, 567, 627, 841
DpnI GATC 2 cut(s) 546, 1399
DpnII GATC 2 cut(s) 544, 1397
DraIII CACNNNGTG 2 cut(s) 106, 1100
EaeI YGGCCR 1 cut(s) 1154
Eam1104I CTCTTC 3 cut(s) 594, 660, 1336
EarI CTCTTC 3 cut(s) 594, 660, 1336
Eco130I CCWWGG 3 cut(s) 52, 486, 561
Eco147I AGGCCT 1 cut(s) 788
Eco24I GRGCYC 1 cut(s) 1048
Eco31I GGTCTC 1 cut(s) 1161
Eco32I GATATC 2 cut(s) 429, 1435
Eco47I GGWCC 1 cut(s) 731
Eco91I GGTNACC 1 cut(s) 556
EcoO65I GGTNACC 1 cut(s) 556
EcoRII CCWGG 1 cut(s) 574
EcoRV GATATC 2 cut(s) 429, 1435
EcoT14I CCWWGG 3 cut(s) 52, 486, 561
EcoT38I GRGCYC 1 cut(s) 1048
ErhI CCWWGG 3 cut(s) 52, 486, 561
Esp3I CGTCTC 1 cut(s) 506
FaeI CATG 9 cut(s) 49, 64, 242, 262, 412, 447, 497, 1155, 1441
FatI CATG 9 cut(s) 45, 60, 238, 258, 408, 443, 493, 1151, 1437
FauNDI CATATG 2 cut(s) 640, 682
FblI GTMKAC 2 cut(s) 75, 1194
Fnu4HI GCNGC 3 cut(s) 141, 203, 572
FokI GGATG 2 cut(s) 809, 1331
FriOI GRGCYC 1 cut(s) 1048
Fsp4HI GCNGC 3 cut(s) 141, 203, 572
FspBI CTAG 2 cut(s) 84, 1190
GlaI GCGC 3 cut(s) 169, 477, 479
GluI GCNGC 3 cut(s) 141, 203, 572
GsaI CCCAGC 1 cut(s) 1137
GsuI CTGGAG 1 cut(s) 935
HaeIII GGCC 6 cut(s) 50, 57, 281, 635, 788, 1156
HapII CCGG 1 cut(s) 193
HhaI GCGC 3 cut(s) 170, 478, 480
Hin1II CATG 9 cut(s) 49, 64, 242, 262, 412, 447, 497, 1155, 1441
Hin6I GCGC 3 cut(s) 168, 476, 478
HinP1I GCGC 3 cut(s) 168, 476, 478
HinfI GANTC 5 cut(s) 64, 176, 824, 920, 1033
HpaII CCGG 1 cut(s) 193
HphI GGTGA 6 cut(s) 106, 115, 568, 1228, 1288, 1397
Hpy166II GTNNAC 3 cut(s) 76, 390, 1195
Hpy188I TCNGA 3 cut(s) 373, 511, 1166
Hpy188III TCNNGA 4 cut(s) 494, 689, 1090, 1178
Hpy8I GTNNAC 3 cut(s) 76, 390, 1195
HpyAV CCTTC 6 cut(s) 215, 276, 694, 703, 1115, 1385
HpyCH4III ACNGT 4 cut(s) 157, 333, 1065, 1161
HpyF10VI GCNNNNNNNGC 6 cut(s) 316, 477, 538, 632, 1370, 1379
HpyF3I CTNAG 4 cut(s) 370, 567, 627, 841
Hsp92II CATG 9 cut(s) 49, 64, 242, 262, 412, 447, 497, 1155, 1441
HspAI GCGC 3 cut(s) 168, 476, 478
KpnI GGTACC 2 cut(s) 187, 266
KspI CCGCGG 1 cut(s) 425
Kzo9I GATC 2 cut(s) 544, 1397
LmnI GCTCC 4 cut(s) 224, 673, 1023, 1051
Lsp1109I GCAGC 3 cut(s) 152, 214, 558
LweI GCATC 2 cut(s) 189, 746
MaeI CTAG 2 cut(s) 84, 1190
MaeIII GTNAC 5 cut(s) 106, 121, 556, 779, 1065
MalI GATC 2 cut(s) 546, 1399
MboI GATC 2 cut(s) 544, 1397
MboII GAAGA 6 cut(s) 283, 350, 611, 677, 1353, 1392
MflI RGATCY 1 cut(s) 1397
MhlI GDGCHC 1 cut(s) 1048
MlsI TGGCCA 1 cut(s) 1156
MluCI AATT 9 cut(s) 209, 250, 286, 648, 971, 1172, 1200, 1367, 1450
MluNI TGGCCA 1 cut(s) 1156
MmeI TCCRAC 2 cut(s) 651, 1085
Mox20I TGGCCA 1 cut(s) 1156
MroXI GAANNNNTTC 1 cut(s) 156
MscI TGGCCA 1 cut(s) 1156
MseI TTAA 3 cut(s) 135, 414, 965
MslI CAYNNNNRTG 3 cut(s) 243, 554, 742
Msp20I TGGCCA 1 cut(s) 1156
MspA1I CMGCKG 4 cut(s) 205, 424, 571, 626
MspI CCGG 1 cut(s) 193
MspR9I CCNGG 1 cut(s) 576
Mva1269I GAATGC 1 cut(s) 93
MvaI CCWGG 1 cut(s) 576
MvnI CGCG 3 cut(s) 168, 424, 478
MwoI GCNNNNNNNGC 6 cut(s) 316, 477, 538, 632, 1370, 1379
NdeI CATATG 2 cut(s) 640, 682
NdeII GATC 2 cut(s) 544, 1397
NlaIII CATG 9 cut(s) 49, 64, 242, 262, 412, 447, 497, 1155, 1441
NlaIV GGNNCC 8 cut(s) 185, 264, 588, 675, 834, 1025, 1047, 1140
NmuCI GTSAC 4 cut(s) 106, 121, 556, 1065
NspI RCATGY 2 cut(s) 412, 447
NspV TTCGAA 2 cut(s) 150, 219
PagI TCATGA 1 cut(s) 493
PauI GCGCGC 1 cut(s) 476
PceI AGGCCT 1 cut(s) 788
PciI ACATGT 1 cut(s) 443
PctI GAATGC 1 cut(s) 93
PdmI GAANNNNTTC 1 cut(s) 156
PfeI GAWTC 5 cut(s) 64, 176, 824, 920, 1033
PkrI GCNGC 3 cut(s) 142, 204, 573
PscI ACATGT 1 cut(s) 443
Psp6I CCWGG 1 cut(s) 574
PspEI GGTNACC 1 cut(s) 556
PspFI CCCAGC 1 cut(s) 1133
PspGI CCWGG 1 cut(s) 574
PspN4I GGNNCC 8 cut(s) 185, 264, 588, 675, 834, 1025, 1047, 1140
PspPI GGNCC 2 cut(s) 49, 731
PstI CTGCAG 1 cut(s) 1078
PstNI CAGNNNCTG 1 cut(s) 1057
PsuI RGATCY 1 cut(s) 1397
PteI GCGCGC 1 cut(s) 476
PvuII CAGCTG 3 cut(s) 205, 571, 626
RsaI GTAC 4 cut(s) 185, 264, 846, 1386
RsaNI GTAC 4 cut(s) 184, 263, 845, 1385
RseI CAYNNNNRTG 3 cut(s) 243, 554, 742
SacII CCGCGG 1 cut(s) 425
SaqAI TTAA 3 cut(s) 135, 414, 965
SatI GCNGC 3 cut(s) 141, 203, 572
Sau3AI GATC 2 cut(s) 544, 1397
Sau96I GGNCC 2 cut(s) 49, 731
ScaI AGTACT 1 cut(s) 846
ScrFI CCNGG 1 cut(s) 576
SduI GDGCHC 1 cut(s) 1048
SfaNI GCATC 2 cut(s) 189, 746
SfcI CTRYAG 1 cut(s) 1074
Sfr303I CCGCGG 1 cut(s) 425
SfuI TTCGAA 2 cut(s) 150, 219
SgrBI CCGCGG 1 cut(s) 425
SinI GGWCC 1 cut(s) 731
SmiMI CAYNNNNRTG 3 cut(s) 243, 554, 742
SpeI ACTAGT 1 cut(s) 1189
Sse9I AATT 9 cut(s) 209, 250, 286, 648, 971, 1172, 1200, 1367, 1450
SseBI AGGCCT 1 cut(s) 788
SsiI CCGC 4 cut(s) 422, 424, 1049, 1214
SspMI CTAG 2 cut(s) 84, 1190
StuI AGGCCT 1 cut(s) 788
StyD4I CCNGG 1 cut(s) 574
StyI CCWWGG 3 cut(s) 52, 486, 561
TaaI ACNGT 4 cut(s) 157, 333, 1065, 1161
TaqI TCGA 3 cut(s) 150, 219, 1179
TasI AATT 9 cut(s) 209, 250, 286, 648, 971, 1172, 1200, 1367, 1450
TatI WGTACW 2 cut(s) 844, 1384
TfiI GAWTC 5 cut(s) 64, 176, 824, 920, 1033
Tru1I TTAA 3 cut(s) 135, 414, 965
Tru9I TTAA 3 cut(s) 135, 414, 965
TscAI CASTG 3 cut(s) 442, 1062, 1164
TseFI GTSAC 4 cut(s) 106, 121, 556, 1065
TseI GCWGC 3 cut(s) 140, 202, 571
Tsp45I GTSAC 4 cut(s) 106, 121, 556, 1065
TspDTI ATGAA 7 cut(s) 34, 482, 624, 668, 813, 925, 1256
TspGWI ACGGA 1 cut(s) 530
TspRI CASTG 3 cut(s) 442, 1062, 1164
VpaK11BI GGWCC 1 cut(s) 731
XapI RAATTY 4 cut(s) 209, 250, 286, 1200
XceI RCATGY 2 cut(s) 412, 447
XmiI GTMKAC 2 cut(s) 75, 1194
XmnI GAANNNNTTC 1 cut(s) 156
XspI CTAG 2 cut(s) 84, 1190
ZrmI AGTACT 1 cut(s) 846
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.