Rroxscaffold_6G00410310

Belongs to the UDP-glycosyltransferase family

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
Physical Location & Seq
Reverse (-)
32747078 .. 32748529
1452 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00410310.1

Sequence Viewer

Length: 1452 bp
ATGGCATCCCAAACCCCCAAGCTTCACTTTACCTTATTCCCTCTTATGGCCCCAGGCCACATGATTCCAATGGTTGATATGGCTAGAATGTTGGCACTGCGAGGTGTTACCATAACCATTTTCACCACACCATGCAACGCCGCCCGTTTCAAATTAGTCCTTGATCGTGCCATCAAAGCCGGGCTTCAAATTCGAGTAATCGAACTGAAGTTTCCATGTCAAGAGGCAGGACTACCCGAGGGGTGTGAGAACTTTGACATGCTACCTTCACCCCACTTGGCCTTCAATTTCTACAATGCAACAGCTATGCTACAAGAGCAAGTAGAGATGTTGTTCCCAGAGCTCACACCAAAGCCATGTTGCATAATCTCTGACTTATGCTTGCCTTGGACAAACGACATTGCTAACATGTTTGATATACCAAGGATAAGTTTCCATGTACATAGTTGCTTTTCACTCTTGTGTTTGTACAATTTAGGCGTTCATTCCAAGGTGTTTGAGAGTGTAACCTCAGATTCTGAGTACTTTATCGTTCCAGGTAATTTGCCTGATCGAATCGAGGTTACCAAAGCTCAGATACCAGGACCGTTGCTTCCAAACTTGAAGGATTTCATTGTCCGAATGGGAGCAGCTGAAAGGGCCTCGTACGGTTCCATTGTGAACACTTTCGAAGAACTCGAGGGACCATATGCCAAAGAGTACAAAAACGCAACAAAAAAGAACCATCTGTGGTGTATTGGCCCAACCTCATTATGGAACCAAGATGACTTGGAGAGAGGAAACAAGTCATCAATTGATAAAAATCAGTGTTTGAAGTGGCTTGATTCCTGGGAACCAAACTCTGTGCTCTATGTTTGCCTTGGAAGCCTATGTAATATGATACCTTCACAACTCATAGAGCTTGGCTTGGGGATAGAAGAGTCAAATAGGCCATTTATTTGGGTTATAAAGGAAGGGAGGACATCAAAAGAGTTGGAGGAGTTGCTTTTGAAAGATGGATTTGAGGAAAGAAACAAAGAAAGAGGCCTTTTGATCAGAGGTTGGGCACCTCAAGTGTTGATTTTGTCACACCAATCAACTGGAGGGTTTATAACACACTGTGGATCGAATTCATTTCTTGAAGGAGTATGTGCTGGAGTTCCCATGGCCACTTGGCCACTATTTGGTGACCAATTTTTTGCTGAGCATCTTCTTGTGACAGTTCGGAAAATTGCTGTAAGAATTGGGGTGCCAAAACCACTGAATTGGGGAGAGGAAGAAAAGACTGGGATATTGGTGTACAGGGAAAACGTGAAGGGAGCCATAGAAATATTAATGGATGAAGGAAAACTAAGCCAAGAGAGAAGAGAAAGAGTTGGGGAGCTTGCAATTATGGCAAAGAGAGCTGTACAAGAAGGGGGCTCATCTCATGTCAACATTACAAATCTAATCCAACATTTCATGCAATTATGA

Protein Analysis

483

Amino Acids

54.29

Weight (kDa)

5.9

Isoelectric Point (pI)

35.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 280 - 392 1.1e-18 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 947, 1091
AccB1I GGYRCC 2 cut(s) 1045, 1228
AccB7I CCANNNNNTGG 1 cut(s) 1163
AciI CCGC 1 cut(s) 141
AclWI GGATC 1 cut(s) 1111
AcoI YGGCCR 2 cut(s) 1146, 1154
AcsI RAATTY 2 cut(s) 189, 1108
AcuI CTGAAG 1 cut(s) 227
AdeI CACNNNGTG 1 cut(s) 1100
AfaI GTAC 7 cut(s) 441, 470, 524, 647, 701, 1280, 1389
AfiI CCNNNNNNNGG 3 cut(s) 46, 753, 1163
AflIII ACRYGT 1 cut(s) 408
AgsI TTSAA 7 cut(s) 151, 188, 286, 604, 814, 991, 1121
AjnI CCWGG 4 cut(s) 52, 535, 580, 827
AleI CACNNNNGTG 1 cut(s) 460
AluBI AGCT 8 cut(s) 22, 305, 343, 572, 632, 901, 1363, 1385
AluI AGCT 8 cut(s) 22, 305, 343, 572, 632, 901, 1363, 1385
Alw21I GWGCWC 2 cut(s) 345, 849
AlwI GGATC 1 cut(s) 1111
AlwNI CAGNNNCTG 1 cut(s) 518
Ama87I CYCGRG 2 cut(s) 236, 677
AoxI GGCC 9 cut(s) 48, 55, 279, 639, 739, 929, 1024, 1146, 1154
ApeKI GCWGC 1 cut(s) 629
ApoI RAATTY 2 cut(s) 189, 1108
ArsI GACNNNNNNTTYG 2 cut(s) 1160, 1192
AseI ATTAAT 1 cut(s) 1313
Asp700I GAANNNNTTC 2 cut(s) 608, 665
AspS9I GGNCC 5 cut(s) 49, 584, 639, 683, 740
AsuC2I CCSGG 1 cut(s) 181
AsuHPI GGTGA 3 cut(s) 115, 261, 1178
AsuII TTCGAA 1 cut(s) 669
AvaI CYCGRG 2 cut(s) 236, 677
AvaII GGWCC 2 cut(s) 584, 683
BaeGI GKGCMC 1 cut(s) 1048
BalI TGGCCA 2 cut(s) 1148, 1156
BanI GGYRCC 2 cut(s) 1045, 1228
BanII GRGCYC 2 cut(s) 345, 1403
Bbv12I GWGCWC 2 cut(s) 345, 849
BbvI GCAGC 1 cut(s) 641
BccI CCATC 3 cut(s) 179, 732, 989
BciT130I CCWGG 4 cut(s) 54, 537, 582, 829
BclI TGATCA 1 cut(s) 1032
BcnI CCSGG 1 cut(s) 181
BfaI CTAG 1 cut(s) 84
BisI GCNGC 2 cut(s) 141, 630
BlpI GCTNAGC 1 cut(s) 1182
BlsI GCNGC 2 cut(s) 142, 631
BmcAI AGTACT 1 cut(s) 524
Bme1390I CCNGG 5 cut(s) 54, 181, 537, 582, 829
Bme18I GGWCC 2 cut(s) 584, 683
BmeT110I CYCGRG 2 cut(s) 236, 677
BmgT120I GGNCC 5 cut(s) 49, 584, 639, 683, 740
BmiI GGNNCC 8 cut(s) 51, 652, 684, 758, 834, 1047, 1230, 1300
BmrFI CCNGG 5 cut(s) 54, 181, 537, 582, 829
BmrI ACTGGG 1 cut(s) 1275
BmsI GCATC 2 cut(s) 14, 1195
BmuI ACTGGG 1 cut(s) 1275
BpmI CTGGAG 2 cut(s) 1101, 1155
Bpu1102I GCTNAGC 1 cut(s) 1182
Bpu14I TTCGAA 1 cut(s) 669
BpuEI CTTGAG 1 cut(s) 1035
BpuMI CCSGG 1 cut(s) 181
BsaBI GATNNNNATC 1 cut(s) 801
BsaJI CCNNGG 8 cut(s) 52, 237, 386, 422, 489, 828, 859, 1143
Bsc4I CCNNNNNNNGG 3 cut(s) 46, 753, 1163
Bse1I ACTGG 2 cut(s) 1084, 1270
Bse3DI GCAATG 1 cut(s) 399
Bse8I GATNNNNATC 1 cut(s) 801
BseBI CCWGG 4 cut(s) 54, 537, 582, 829
BseDI CCNNGG 8 cut(s) 52, 237, 386, 422, 489, 828, 859, 1143
BseGI GGATG 2 cut(s) 5, 1324
BseJI GATNNNNATC 1 cut(s) 801
BseLI CCNNNNNNNGG 3 cut(s) 46, 753, 1163
BseMI GCAATG 1 cut(s) 399
BseMII CTCAG 4 cut(s) 510, 525, 587, 1173
BseNI ACTGG 2 cut(s) 1084, 1270
BseRI GAGGAG 1 cut(s) 992
BseSI GKGCMC 1 cut(s) 1048
BseXI GCAGC 1 cut(s) 641
BshFI GGCC 9 cut(s) 50, 57, 281, 641, 741, 931, 1026, 1148, 1156
BshNI GGYRCC 2 cut(s) 1045, 1228
BsiHKAI GWGCWC 2 cut(s) 345, 849
BsiHKCI CYCGRG 2 cut(s) 236, 677
BsiSI CCGG 1 cut(s) 180
BsiWI CGTACG 1 cut(s) 645
BslFI GGGAC 1 cut(s) 696
BslI CCNNNNNNNGG 3 cut(s) 46, 753, 1163
BsmFI GGGAC 1 cut(s) 696
BsnI GGCC 9 cut(s) 50, 57, 281, 641, 741, 931, 1026, 1148, 1156
BsoBI CYCGRG 2 cut(s) 236, 677
Bsp119I TTCGAA 1 cut(s) 669
Bsp1286I GDGCHC 4 cut(s) 345, 849, 1048, 1403
Bsp1407I TGTACA 4 cut(s) 439, 468, 1278, 1387
Bsp143I GATC 4 cut(s) 163, 550, 1032, 1103
Bsp1720I GCTNAGC 1 cut(s) 1182
Bsp19I CCATGG 1 cut(s) 1143
BspACI CCGC 1 cut(s) 141
BspANI GGCC 9 cut(s) 50, 57, 281, 641, 741, 931, 1026, 1148, 1156
BspCNI CTCAG 4 cut(s) 511, 524, 586, 1174
BspLI GGNNCC 8 cut(s) 51, 652, 684, 758, 834, 1047, 1230, 1300
BspPI GGATC 1 cut(s) 1111
BspT104I TTCGAA 1 cut(s) 669
BspT107I GGYRCC 2 cut(s) 1045, 1228
BsrDI GCAATG 1 cut(s) 399
BsrGI TGTACA 4 cut(s) 439, 468, 1278, 1387
BsrI ACTGG 2 cut(s) 1084, 1270
BssECI CCNNGG 8 cut(s) 52, 237, 386, 422, 489, 828, 859, 1143
BssMI GATC 4 cut(s) 163, 550, 1032, 1103
BssT1I CCWWGG 5 cut(s) 386, 422, 489, 859, 1143
Bst2UI CCWGG 4 cut(s) 54, 537, 582, 829
Bst4CI ACNGT 4 cut(s) 588, 650, 1100, 1201
Bst6I CTCTTC 2 cut(s) 912, 1339
BstAUI TGTACA 4 cut(s) 439, 468, 1278, 1387
BstBI TTCGAA 1 cut(s) 669
BstC8I GCNNGC 2 cut(s) 383, 1365
BstDEI CTNAG 5 cut(s) 511, 519, 573, 1182, 1331
BstDSI CCRYGG 1 cut(s) 1143
BstEII GGTNACC 2 cut(s) 562, 1166
BstF5I GGATG 2 cut(s) 5, 1324
BstKTI GATC 4 cut(s) 166, 553, 1035, 1106
BstMBI GATC 4 cut(s) 163, 550, 1032, 1103
BstMWI GCNNNNNNNGC 6 cut(s) 176, 316, 638, 864, 1373, 1382
BstNI CCWGG 4 cut(s) 54, 537, 582, 829
BstNSI RCATGY 2 cut(s) 262, 412
BstPI GGTNACC 2 cut(s) 562, 1166
BstSCI CCNGG 5 cut(s) 52, 179, 535, 580, 827
BstSLI GKGCMC 1 cut(s) 1048
BstV1I GCAGC 1 cut(s) 641
BstXI CCANNNNNNTGG 3 cut(s) 939, 1079, 1245
BsuRI GGCC 9 cut(s) 50, 57, 281, 641, 741, 931, 1026, 1148, 1156
BtgI CCRYGG 1 cut(s) 1143
BtsCI GGATG 2 cut(s) 5, 1324
BtsI GCAGTG 1 cut(s) 95
BtsIMutI CAGTG 4 cut(s) 95, 812, 1096, 1238
Cac8I GCNNGC 2 cut(s) 383, 1365
CaiI CAGNNNCTG 1 cut(s) 518
Cfr13I GGNCC 5 cut(s) 49, 584, 639, 683, 740
Csp6I GTAC 7 cut(s) 440, 469, 523, 646, 700, 1279, 1388
CviQI GTAC 7 cut(s) 440, 469, 523, 646, 700, 1279, 1388
DdeI CTNAG 5 cut(s) 511, 519, 573, 1182, 1331
DpnI GATC 4 cut(s) 165, 552, 1034, 1105
DpnII GATC 4 cut(s) 163, 550, 1032, 1103
DraIII CACNNNGTG 1 cut(s) 1100
EaeI YGGCCR 2 cut(s) 1146, 1154
Eam1104I CTCTTC 2 cut(s) 912, 1339
EarI CTCTTC 2 cut(s) 912, 1339
Ecl136II GAGCTC 1 cut(s) 343
Eco130I CCWWGG 5 cut(s) 386, 422, 489, 859, 1143
Eco147I AGGCCT 1 cut(s) 1026
Eco24I GRGCYC 2 cut(s) 345, 1403
Eco47I GGWCC 2 cut(s) 584, 683
Eco53kI GAGCTC 1 cut(s) 343
Eco57I CTGAAG 1 cut(s) 227
Eco88I CYCGRG 2 cut(s) 236, 677
Eco91I GGTNACC 2 cut(s) 562, 1166
EcoICRI GAGCTC 1 cut(s) 343
EcoO109I RGGNCCY 1 cut(s) 639
EcoO65I GGTNACC 2 cut(s) 562, 1166
EcoRI GAATTC 1 cut(s) 1108
EcoRII CCWGG 4 cut(s) 52, 535, 580, 827
EcoT14I CCWWGG 5 cut(s) 386, 422, 489, 859, 1143
EcoT38I GRGCYC 2 cut(s) 345, 1403
ErhI CCWWGG 5 cut(s) 386, 422, 489, 859, 1143
FalI AAGNNNNNCTT 4 cut(s) 11, 43, 168, 200
FaqI GGGAC 1 cut(s) 696
FauNDI CATATG 1 cut(s) 688
FbaI TGATCA 1 cut(s) 1032
Fnu4HI GCNGC 2 cut(s) 141, 630
FokI GGATG 1 cut(s) 1331
FriOI GRGCYC 2 cut(s) 345, 1403
Fsp4HI GCNGC 2 cut(s) 141, 630
FspBI CTAG 1 cut(s) 84
GluI GCNGC 2 cut(s) 141, 630
GsuI CTGGAG 2 cut(s) 1101, 1155
HaeIII GGCC 9 cut(s) 50, 57, 281, 641, 741, 931, 1026, 1148, 1156
HapII CCGG 1 cut(s) 180
HincII GTYRAC 1 cut(s) 1414
HindII GTYRAC 1 cut(s) 1414
HindIII AAGCTT 1 cut(s) 20
HinfI GANTC 5 cut(s) 64, 515, 555, 824, 920
HpaII CCGG 1 cut(s) 180
HphI GGTGA 3 cut(s) 115, 261, 1178
Hpy166II GTNNAC 3 cut(s) 661, 1279, 1414
Hpy188I TCNGA 7 cut(s) 373, 514, 520, 576, 620, 1037, 1206
Hpy188III TCNNGA 2 cut(s) 221, 1118
Hpy8I GTNNAC 3 cut(s) 661, 1279, 1414
HpyAV CCTTC 9 cut(s) 276, 292, 598, 894, 947, 1115, 1288, 1316, 1388
HpyCH4III ACNGT 4 cut(s) 588, 650, 1100, 1201
HpyCH4IV ACGT 1 cut(s) 1290
HpyCH4V TGCA 5 cut(s) 135, 299, 363, 1367, 1444
HpyF10VI GCNNNNNNNGC 6 cut(s) 176, 316, 638, 864, 1373, 1382
HpyF3I CTNAG 5 cut(s) 511, 519, 573, 1182, 1331
HpySE526I ACGT 1 cut(s) 1290
Ksp22I TGATCA 1 cut(s) 1032
Kzo9I GATC 4 cut(s) 163, 550, 1032, 1103
LmnI GCTCC 3 cut(s) 626, 1298, 1360
Lsp1109I GCAGC 1 cut(s) 641
LweI GCATC 2 cut(s) 14, 1195
MaeI CTAG 1 cut(s) 84
MaeII ACGT 1 cut(s) 1290
MaeIII GTNAC 6 cut(s) 106, 505, 562, 1065, 1166, 1195
MalI GATC 4 cut(s) 165, 552, 1034, 1105
MboI GATC 4 cut(s) 163, 550, 1032, 1103
MboII GAAGA 5 cut(s) 683, 929, 1181, 1268, 1356
MfeI CAATTG 1 cut(s) 792
MhlI GDGCHC 4 cut(s) 345, 849, 1048, 1403
MlsI TGGCCA 2 cut(s) 1148, 1156
MluNI TGGCCA 2 cut(s) 1148, 1156
MlyI GAGTC 1 cut(s) 929
MmeI TCCRAC 1 cut(s) 954
Mox20I TGGCCA 2 cut(s) 1148, 1156
MroXI GAANNNNTTC 2 cut(s) 608, 665
MscI TGGCCA 2 cut(s) 1148, 1156
MseI TTAA 1 cut(s) 1313
MslI CAYNNNNRTG 1 cut(s) 460
Msp20I TGGCCA 2 cut(s) 1148, 1156
MspA1I CMGCKG 1 cut(s) 632
MspI CCGG 1 cut(s) 180
MspR9I CCNGG 5 cut(s) 54, 181, 537, 582, 829
MunI CAATTG 1 cut(s) 792
MvaI CCWGG 4 cut(s) 54, 537, 582, 829
MwoI GCNNNNNNNGC 6 cut(s) 176, 316, 638, 864, 1373, 1382
NciI CCSGG 1 cut(s) 181
NcoI CCATGG 1 cut(s) 1143
NdeI CATATG 1 cut(s) 688
NdeII GATC 4 cut(s) 163, 550, 1032, 1103
NlaIV GGNNCC 8 cut(s) 51, 652, 684, 758, 834, 1047, 1230, 1300
NmuCI GTSAC 3 cut(s) 1065, 1166, 1195
NspI RCATGY 2 cut(s) 262, 412
NspV TTCGAA 1 cut(s) 669
OliI CACNNNNGTG 1 cut(s) 460
PaeR7I CTCGAG 1 cut(s) 677
PceI AGGCCT 1 cut(s) 1026
PciI ACATGT 1 cut(s) 408
PcsI WCGNNNNNNNCGW 1 cut(s) 675
PdmI GAANNNNTTC 2 cut(s) 608, 665
PfeI GAWTC 4 cut(s) 64, 515, 555, 824
Pfl23II CGTACG 1 cut(s) 645
PflMI CCANNNNNTGG 1 cut(s) 1163
PkrI GCNGC 2 cut(s) 142, 631
PleI GAGTC 1 cut(s) 928
PpsI GAGTC 1 cut(s) 928
PscI ACATGT 1 cut(s) 408
PshBI ATTAAT 1 cut(s) 1313
PsiI TTATAA 2 cut(s) 947, 1091
Psp124BI GAGCTC 1 cut(s) 345
Psp6I CCWGG 4 cut(s) 52, 535, 580, 827
PspEI GGTNACC 2 cut(s) 562, 1166
PspGI CCWGG 4 cut(s) 52, 535, 580, 827
PspLI CGTACG 1 cut(s) 645
PspN4I GGNNCC 8 cut(s) 51, 652, 684, 758, 834, 1047, 1230, 1300
PspPI GGNCC 5 cut(s) 49, 584, 639, 683, 740
PspXI VCTCGAGB 1 cut(s) 677
PstNI CAGNNNCTG 1 cut(s) 518
PvuII CAGCTG 1 cut(s) 632
RsaI GTAC 7 cut(s) 441, 470, 524, 647, 701, 1280, 1389
RsaNI GTAC 7 cut(s) 440, 469, 523, 646, 700, 1279, 1388
RseI CAYNNNNRTG 1 cut(s) 460
SacI GAGCTC 1 cut(s) 345
SaqAI TTAA 1 cut(s) 1313
SatI GCNGC 2 cut(s) 141, 630
Sau3AI GATC 4 cut(s) 163, 550, 1032, 1103
Sau96I GGNCC 5 cut(s) 49, 584, 639, 683, 740
ScaI AGTACT 1 cut(s) 524
SchI GAGTC 1 cut(s) 929
ScrFI CCNGG 5 cut(s) 54, 181, 537, 582, 829
SduI GDGCHC 4 cut(s) 345, 849, 1048, 1403
SfaNI GCATC 2 cut(s) 14, 1195
Sfr274I CTCGAG 1 cut(s) 677
SfuI TTCGAA 1 cut(s) 669
SinI GGWCC 2 cut(s) 584, 683
SlaI CTCGAG 1 cut(s) 677
SmiMI CAYNNNNRTG 1 cut(s) 460
SmlI CTYRAG 2 cut(s) 677, 1050
SmoI CTYRAG 2 cut(s) 677, 1050
SseBI AGGCCT 1 cut(s) 1026
SsiI CCGC 1 cut(s) 141
SspI AATATT 1 cut(s) 1311
SspMI CTAG 1 cut(s) 84
SstI GAGCTC 1 cut(s) 345
StuI AGGCCT 1 cut(s) 1026
StyD4I CCNGG 5 cut(s) 52, 179, 535, 580, 827
StyI CCWWGG 5 cut(s) 386, 422, 489, 859, 1143
TaaI ACNGT 4 cut(s) 588, 650, 1100, 1201
TaiI ACGT 1 cut(s) 1293
TaqI TCGA 7 cut(s) 193, 201, 553, 558, 669, 678, 1106
TatI WGTACW 6 cut(s) 439, 468, 522, 699, 1278, 1387
TauI GCSGC 1 cut(s) 143
TfiI GAWTC 4 cut(s) 64, 515, 555, 824
Tru1I TTAA 1 cut(s) 1313
Tru9I TTAA 1 cut(s) 1313
TscAI CASTG 4 cut(s) 102, 812, 1103, 1245
TseFI GTSAC 3 cut(s) 1065, 1166, 1195
TseI GCWGC 1 cut(s) 629
Tsp45I GTSAC 3 cut(s) 1065, 1166, 1195
TspDTI ATGAA 5 cut(s) 473, 601, 1101, 1335, 1429
TspRI CASTG 4 cut(s) 102, 812, 1103, 1245
Van91I CCANNNNNTGG 1 cut(s) 1163
VpaK11BI GGWCC 2 cut(s) 584, 683
VspI ATTAAT 1 cut(s) 1313
XapI RAATTY 2 cut(s) 189, 1108
XceI RCATGY 2 cut(s) 262, 412
XcmI CCANNNNNNNNNTGG 1 cut(s) 750
XhoI CTCGAG 1 cut(s) 677
XmnI GAANNNNTTC 2 cut(s) 608, 665
XspI CTAG 1 cut(s) 84
ZrmI AGTACT 1 cut(s) 524
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.